Tully_2018_Sci.Data_5_170203

Reference

Title : The reconstruction of 2,631 draft metagenome-assembled genomes from the global oceans - Tully_2018_Sci.Data_5_170203
Author(s) : Tully BJ , Graham ED , Heidelberg JF
Ref : Sci Data , 5 :170203 , 2018
Abstract :

Microorganisms play a crucial role in mediating global biogeochemical cycles in the marine environment. By reconstructing the genomes of environmental organisms through metagenomics, researchers are able to study the metabolic potential of Bacteria and Archaea that are resistant to isolation in the laboratory. Utilizing the large metagenomic dataset generated from 234 samples collected during the Tara Oceans circumnavigation expedition, we were able to assemble 102 billion paired-end reads into 562 million contigs, which in turn were co-assembled and consolidated in to 7.2 million contigs >/=2 kb in length. Approximately 1 million of these contigs were binned to reconstruct draft genomes. In total, 2,631 draft genomes with an estimated completion of >/=50% were generated (1,491 draft genomes >70% complete; 603 genomes >90% complete). A majority of the draft genomes were manually assigned phylogeny based on sets of concatenated phylogenetic marker genes and/or 16S rRNA gene sequences. The draft genomes are now publically available for the research community at-large.

PubMedSearch : Tully_2018_Sci.Data_5_170203
PubMedID: 29337314
Gene_locus related to this paper: 9plan-a0a2e7eti6 , 9bact-a0a2e9lut3 , 9bact-a0a2e7u542 , 9bact-a0a2d9a7p9 , 9gamm-a0a2e8xfn3 , 9bact-a0a349js52 , 9bact-a0a2e1vza0 , 9actn-a0a2e6dkl7 , 9gamm-a0a2d9xev9 , 9gamm-a0a2e7dj38 , 9plan-a0a2e7nju0 , 9gamm-a0a2e3urn0 , 9prot-a0a2e6qgd8 , 9prot-a0a2e3l5i4 , 9flao-a0a2d7dh71 , 9bact-a0a2e3sp82 , 9flao-a0a2e4zqu1 , 9flao-a0a2e7h4a6 , 9flao-a0a2e9yat4

Citations formats

Tully BJ, Graham ED, Heidelberg JF (2018)
The reconstruction of 2,631 draft metagenome-assembled genomes from the global oceans
Sci Data 5 :170203

Tully BJ, Graham ED, Heidelberg JF (2018)
Sci Data 5 :170203