| Title : The reconstruction of 2,631 draft metagenome-assembled genomes from the global oceans - Tully_2018_Sci.Data_5_170203 |
| Author(s) : Tully BJ , Graham ED , Heidelberg JF |
| Ref : Sci Data , 5 :170203 , 2018 |
| PubMedID: 29337314 |
| Gene_locus related to this paper: 9plan-a0a2e7eti6 , 9bact-a0a2e9lut3 , 9bact-a0a2e7u542 , 9bact-a0a2d9a7p9 , 9gamm-a0a2e8xfn3 , 9bact-a0a349js52 , 9bact-a0a2e1vza0 , 9actn-a0a2e6dkl7 , 9gamm-a0a2d9xev9 , 9gamm-a0a2e7dj38 , 9plan-a0a2e7nju0 , 9gamm-a0a2e3urn0 , 9prot-a0a2e6qgd8 , 9prot-a0a2e3l5i4 , 9flao-a0a2d7dh71 , 9bact-a0a2e3sp82 , 9flao-a0a2e4zqu1 , 9flao-a0a2e7h4a6 , 9flao-a0a2e9yat4 |
| Title : 290 metagenome-assembled genomes from the Mediterranean Sea: a resource for marine microbiology - Tully_2017_PeerJ_5_e3558 |
| Author(s) : Tully BJ , Sachdeva R , Graham ED , Heidelberg JF |
| Ref : PeerJ , 5 :e3558 , 2017 |
| PubMedID: 28713657 |
| Gene_locus related to this paper: 9flao-a0a3r7usa3 |
| Title : Candidatus Chloracidobacterium thermophilum: an aerobic phototrophic Acidobacterium - Bryant_2007_Science_317_523 |
| Author(s) : Bryant DA , Costas AM , Maresca JA , Chew AG , Klatt CG , Bateson MM , Tallon LJ , Hostetler J , Nelson WC , Heidelberg JF , Ward DM |
| Ref : Science , 317 :523 , 2007 |
| PubMedID: 17656724 |
| Gene_locus related to this paper: 9bact-a8djg9 |
| Title : Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses - Bhaya_2007_ISME.J_1_703 |
| Author(s) : Bhaya D , Grossman AR , Steunou AS , Khuri N , Cohan FM , Hamamura N , Melendrez MC , Bateson MM , Ward DM , Heidelberg JF |
| Ref : Isme J , 1 :703 , 2007 |
| PubMedID: 18059494 |
| Gene_locus related to this paper: synja-q2jrn3 , synja-q2jsq4 , synja-q2jth8 , synja-q2ju13 , synja-q2jx91 , synjb-q2jik5 , synjb-q2jjg1 , synjb-q2jki2 , synjb-q2jl83 , synjb-q2jp12 |
| Title : Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment - Palenik_2006_Proc.Natl.Acad.Sci.U.S.A_103_13555 |
| Author(s) : Palenik B , Ren Q , Dupont CL , Myers GS , Heidelberg JF , Badger JH , Madupu R , Nelson WC , Brinkac LM , Dodson RJ , Durkin AS , Daugherty SC , Sullivan SA , Khouri H , Mohamoud Y , Halpin R , Paulsen IT |
| Ref : Proc Natl Acad Sci U S A , 103 :13555 , 2006 |
| PubMedID: 16938853 |
| Gene_locus related to this paper: syns3-q0i8r7 , syns3-q0i9w2 , syns3-q0i996 , syns3-q0ia13 , syns3-q0ia55 , syns3-q0ib73 , syns3-q0ibm2 , syns3-q0ibp1 , syns3-q0iby1 , syns9-q3ax89 , syns3-q0ibv4 |
| Title : Genome sequence of Aeromonas hydrophila ATCC 7966T: jack of all trades - Seshadri_2006_J.Bacteriol_188_8272 |
| Author(s) : Seshadri R , Joseph SW , Chopra AK , Sha J , Shaw J , Graf J , Haft D , Wu M , Ren Q , Rosovitz MJ , Madupu R , Tallon L , Kim M , Jin S , Vuong H , Stine OC , Ali A , Horneman AJ , Heidelberg JF |
| Ref : Journal of Bacteriology , 188 :8272 , 2006 |
| PubMedID: 16980456 |
| Gene_locus related to this paper: aerhh-a0kes5 , aerhh-a0keu7 , aerhh-a0kf11 , aerhh-a0kfl9 , aerhh-a0kfn7 , aerhh-a0kgz2 , aerhh-a0khk1 , aerhh-a0kin3 , aerhh-a0kiv7 , aerhh-a0kkc6 , aerhh-a0kkj8 , aerhh-a0klc3 , aerhh-a0kme3 , aerhh-a0knr1 , aerhh-a0knu8 , aerhh-a0kp50 , aerhh-a0kpk1 , aerhh-a0kr22 , aerhy-PHAC , aerpu-PEP , aerhh-a0khd8 , aerhh-a0kle4 , aerhy-a0a028v5g9 |
| Title : Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes - Seshadri_2005_Science_307_105 |
| Author(s) : Seshadri R , Adrian L , Fouts DE , Eisen JA , Phillippy AM , Methe BA , Ward NL , Nelson WC , DeBoy RT , Khouri HM , Kolonay JF , Dodson RJ , Daugherty SC , Brinkac LM , Sullivan SA , Madupu R , Nelson KE , Kang KH , Impraim M , Tran K , Robinson JM , Forberger HA , Fraser CM , Zinder SH , Heidelberg JF |
| Ref : Science , 307 :105 , 2005 |
| PubMedID: 15637277 |
| Gene_locus related to this paper: dehm1-q3z6q3 , dehm1-q3z6x9 , dehm1-q3z6z2 , dehm1-q3z8f3 , dehm1-q3za50 |
| Title : Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes - Seshadri_2004_Proc.Natl.Acad.Sci.U.S.A_101_5646 |
| Author(s) : Seshadri R , Myers GS , Tettelin H , Eisen JA , Heidelberg JF , Dodson RJ , Davidsen TM , DeBoy RT , Fouts DE , Haft DH , Selengut J , Ren Q , Brinkac LM , Madupu R , Kolonay J , Durkin SA , Daugherty SC , Shetty J , Shvartsbeyn A , Gebregeorgis E , Geer K , Tsegaye G , Malek J , Ayodeji B , Shatsman S , McLeod MP , Smajs D , Howell JK , Pal S , Amin A , Vashisth P , McNeill TZ , Xiang Q , Sodergren E , Baca E , Weinstock GM , Norris SJ , Fraser CM , Paulsen IT |
| Ref : Proc Natl Acad Sci U S A , 101 :5646 , 2004 |
| PubMedID: 15064399 |
| Gene_locus related to this paper: trede-q73j01 , trede-q73kf5 , trede-q73kp3 , trede-q73ks1 , trede-q73nf8 , trede-q73qt5 , trede-q73qv0 , trede-q73ra4 , trede-q73ri8 , trede-Q93EK3 , trede-TDE0521 |
| Title : Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath) - Ward_2004_PLoS.Biol_2_e303 |
| Author(s) : Ward N , Larsen O , Sakwa J , Bruseth L , Khouri H , Durkin AS , Dimitrov G , Jiang L , Scanlan D , Kang KH , Lewis M , Nelson KE , Methe B , Wu M , Heidelberg JF , Paulsen IT , Fouts D , Ravel J , Tettelin H , Ren Q , Read T , DeBoy RT , Seshadri R , Salzberg SL , Jensen HB , Birkeland NK , Nelson WC , Dodson RJ , Grindhaug SH , Holt I , Eidhammer I , Jonasen I , Vanaken S , Utterback T , Feldblyum TV , Fraser CM , Lillehaug JR , Eisen JA |
| Ref : PLoS Biol , 2 :e303 , 2004 |
| PubMedID: 15383840 |
| Gene_locus related to this paper: metca-q60a38 , metca-q60bu6 , metca-q60cn0 , metca-q605j8 , metca-q606x9 , metca-q607f7 , metca-q607m2 , metca-q609v0 |
| Title : The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough - Heidelberg_2004_Nat.Biotechnol_22_554 |
| Author(s) : Heidelberg JF , Seshadri R , Haveman SA , Hemme CL , Paulsen IT , Kolonay JF , Eisen JA , Ward N , Methe B , Brinkac LM , Daugherty SC , DeBoy RT , Dodson RJ , Durkin AS , Madupu R , Nelson WC , Sullivan SA , Fouts D , Haft DH , Selengut J , Peterson JD , Davidsen TM , Zafar N , Zhou L , Radune D , Dimitrov G , Hance M , Tran K , Khouri H , Gill J , Utterback TR , Feldblyum TV , Wall JD , Voordouw G , Fraser CM |
| Ref : Nat Biotechnol , 22 :554 , 2004 |
| PubMedID: 15077118 |
| Gene_locus related to this paper: desvh-q72b36 , desvh-q72ed6 , desvh-q728i3 , desvh-q729w4 , desvh-q72b15 |
| Title : Genome of Geobacter sulfurreducens: metal reduction in subsurface environments - Methe_2003_Science_302_1967 |
| Author(s) : Methe BA , Nelson KE , Eisen JA , Paulsen IT , Nelson W , Heidelberg JF , Wu D , Wu M , Ward N , Beanan MJ , Dodson RJ , Madupu R , Brinkac LM , Daugherty SC , DeBoy RT , Durkin AS , Gwinn M , Kolonay JF , Sullivan SA , Haft DH , Selengut J , Davidsen TM , Zafar N , White O , Tran B , Romero C , Forberger HA , Weidman J , Khouri H , Feldblyum TV , Utterback TR , Van Aken SE , Lovley DR , Fraser CM |
| Ref : Science , 302 :1967 , 2003 |
| PubMedID: 14671304 |
| Gene_locus related to this paper: geosl-q74a54 , geosl-q74ac8 , geosl-q74eb1 , geosl-q747u4 , geosl-q747v8 , geosl-q749w4 |
| Title : Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis - Paulsen_2003_Science_299_2071 |
| Author(s) : Paulsen IT , Banerjei L , Myers GS , Nelson KE , Seshadri R , Read TD , Fouts DE , Eisen JA , Gill SR , Heidelberg JF , Tettelin H , Dodson RJ , Umayam L , Brinkac L , Beanan M , Daugherty S , DeBoy RT , Durkin S , Kolonay J , Madupu R , Nelson W , Vamathevan J , Tran B , Upton J , Hansen T , Shetty J , Khouri H , Utterback T , Radune D , Ketchum KA , Dougherty BA , Fraser CM |
| Ref : Science , 299 :2071 , 2003 |
| PubMedID: 12663927 |
| Gene_locus related to this paper: entfa-EF0101 , entfa-EF0274 , entfa-EF0381 , entfa-EF0449 , entfa-EF0667 , entfa-EF0786 , entfa-EF1028 , entfa-EF1236 , entfa-EF1505 , entfa-EF1536 , entfa-EF1670 , entfa-EF2618 , entfa-EF2728 , entfa-EF2792 , entfa-EF2963 , entfa-EF3191 |
| Title : Complete genome sequence of the Q-fever pathogen Coxiella burnetii - Seshadri_2003_Proc.Natl.Acad.Sci.U.S.A_100_5455 |
| Author(s) : Seshadri R , Paulsen IT , Eisen JA , Read TD , Nelson KE , Nelson WC , Ward NL , Tettelin H , Davidsen TM , Beanan MJ , DeBoy RT , Daugherty SC , Brinkac LM , Madupu R , Dodson RJ , Khouri HM , Lee KH , Carty HA , Scanlan D , Heinzen RA , Thompson HA , Samuel JE , Fraser CM , Heidelberg JF |
| Ref : Proc Natl Acad Sci U S A , 100 :5455 , 2003 |
| PubMedID: 12704232 |
| Gene_locus related to this paper: coxbu-BIOH , coxbu-CBU0752 , coxbu-CBU1119 , coxbu-CBU1225 , coxbu-CBU1529 , coxbu-CBU1769 , coxbu-CBU1975 |
| Title : The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium - Eisen_2002_Proc.Natl.Acad.Sci.U.S.A_99_9509 |
| Author(s) : Eisen JA , Nelson KE , Paulsen IT , Heidelberg JF , Wu M , Dodson RJ , Deboy R , Gwinn ML , Nelson WC , Haft DH , Hickey EK , Peterson JD , Durkin AS , Kolonay JL , Yang F , Holt I , Umayam LA , Mason T , Brenner M , Shea TP , Parksey D , Nierman WC , Feldblyum TV , Hansen CL , Craven MB , Radune D , Vamathevan J , Khouri H , White O , Gruber TM , Ketchum KA , Venter JC , Tettelin H , Bryant DA , Fraser CM |
| Ref : Proceedings of the National Academy of Sciences of the United States of America , 99 :9509 , 2002 |
| PubMedID: 12093901 |
| Gene_locus related to this paper: chlte-CT0177 , chlte-CT0524 , chlte-CT0717 , chlte-CT0947 , chlte-CT1208 , chlte-CT1253 , chlte-CT1301 , chlte-CT1312 , chlte-CT1856 , chlte-CT1908 , chlte-CT2087 , chlte-CT2271 , chlte-MENH , chlte-MET2 , chlte-q4w546 , chlte-q8kgb8 |
| Title : The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts - Paulsen_2002_Proc.Natl.Acad.Sci.U.S.A_99_13148 |
| Author(s) : Paulsen IT , Seshadri R , Nelson KE , Eisen JA , Heidelberg JF , Read TD , Dodson RJ , Umayam L , Brinkac LM , Beanan MJ , Daugherty SC , DeBoy RT , Durkin AS , Kolonay JF , Madupu R , Nelson WC , Ayodeji B , Kraul M , Shetty J , Malek J , Van Aken SE , Riedmuller S , Tettelin H , Gill SR , White O , Salzberg SL , Hoover DL , Lindler LE , Halling SM , Boyle SM , Fraser CM |
| Ref : Proc Natl Acad Sci U S A , 99 :13148 , 2002 |
| PubMedID: 12271122 |
| Gene_locus related to this paper: brume-BMEI0552 , brume-BMEI0733 , brume-BMEI1044 , brume-BMEI1119 , brume-BMEI1365 , brume-BMEI1594 , brume-BMEI1608 , brume-BMEI1822 , brume-BMEI1884 , brume-BMEI1951 , brume-BMEI2011 , brume-BMEII0047 , brume-BMEII0681 , brume-BMEII0989 , brume-PCAD , brusu-BR0288 , brusu-BR1291 , brusu-BR1327 , brusu-BRA0989 |
| Title : Unsuspected diversity among marine aerobic anoxygenic phototrophs. - |
| Author(s) : Beja O , Suzuki MT , Heidelberg JF , Nelson WC , Preston CM , Hamada T , Eisen JA , Fraser CM , DeLong EF |
| Ref : Nature , 415 :630 , 2002 |
| PubMedID: 11832943 |
| Gene_locus related to this paper: uncpr-65D09.54 , uncpr-65D09.60 , uncpr-Q8KZ44 , 9rhob-a0a076k2s0 |
| Title : Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39 - Read_2000_Nucleic.Acids.Res_28_1397 |
| Author(s) : Read TD , Brunham RC , Shen C , Gill SR , Heidelberg JF , White O , Hickey EK , Peterson J , Utterback T , Berry K , Bass S , Linher K , Weidman J , Khouri H , Craven B , Bowman C , Dodson R , Gwinn M , Nelson W , Deboy R , Kolonay J , McClarty G , Salzberg SL , Eisen J , Fraser CM |
| Ref : Nucleic Acids Research , 28 :1397 , 2000 |
| PubMedID: 10684935 |
| Gene_locus related to this paper: chlmu-TC0345 , chlmu-TC0413 , chlmu-TC0426 , chlmu-TC0478 , chlpn-CPJ0152 , chlpn-CPJ0342 , chlpn-CPN0161 , chlpn-CPN0271 , chlpn-q9jrv1 , chlpn-q9js10 , chlpn-q9k1u7 , chlpn-q9z6x9 |
| Title : DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae - Heidelberg_2000_Nature_406_477 |
| Author(s) : Heidelberg JF , Eisen JA , Nelson WC , Clayton RA , Gwinn ML , Dodson RJ , Haft DH , Hickey EK , Peterson JD , Umayam L , Gill SR , Nelson KE , Read TD , Tettelin H , Richardson D , Ermolaeva MD , Vamathevan J , Bass S , Qin H , Dragoi I , Sellers P , McDonald L , Utterback T , Fleishmann RD , Nierman WC , White O , Salzberg SL , Smith HO , Colwell RR , Mekalanos JJ , Venter JC , Fraser CM |
| Ref : Nature , 406 :477 , 2000 |
| PubMedID: 10952301 |
| Gene_locus related to this paper: vibch-rtxAABH , vibch-lipas , vibch-VC0135 , vibch-VC0522 , vibch-VC1418 , vibch-VC1725 , vibch-VC1974 , vibch-VC1986 , vibch-VC2097 , vibch-VC2432 , vibch-VC2610 , vibch-VC2718 , vibch-VCA0063 , vibch-VCA0092 , vibch-VCA0490 , vibch-VCA0688 , vibch-VCA0754 , vibch-VCA0863 , vibch-y1892 , vibch-y2276 |