clotm-xyny
Clostridium thermocellum (strains DSM 2360; JW20; ATCC 27405 / DSM 1237) Feruloyl Esterase Domain (1,4-beta-d-xylan xylanohydrolase y)
Comment
The 297 last aa of (1,4-beta-d-xylan xylanohydrolase y) correspond to the feruloyl domain and is an alpha\/beta-fold structure (here the modules CBM_4_9, Glyco_hydro_10, CBM_4_9 and Dockerin_1 are excluded). Structure solution revealed an error in the deposited sequence. Residues 1017 and 1018, Asp-His in the deposited sequence, were corrected to Glu-Asp The Asp is in the catalytic triad the numbering from only the esterase portion is S166 (954) H270 (1058) D230 (1018) structure 1ohz has only a fragment outside the domain
Relationship
Family : A85-Feruloyl-Esterase
Block : X
Position in NCBI Life Tree : Clostridium thermocellum
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms N E > Bacteria N E > Terrabacteria group N E > Firmicutes N E > Clostridia N E > Clostridiales N E > Ruminococcaceae N E > Ruminiclostridium N E > Ruminiclostridium thermocellum N EMolecular evidence
Sequence
Peptide
MASDKFPVAE NPSSSFKYES AVQYRPAPDS YLNPCPQAGR IVKETYTGIN GTKSLNVYLP YGYDPNKKYN IFYLMHGGGE NENTIFSNDV KLQNILDHAI MNGELEPLIV VTPTFNGGNC TAQNFYQEFR QNVIPFVESK YSTYAESTTP QGIAASRMHR GFGGFSMGGL TTWYVMVNCL DYVAYFMPLS GDYWYGNSPQ DKANSIAEAI NRSGLSKREY FVFAATGSED IAYANMNPQI EAMKALPHFD YTSDFSKGNF YFLVAPGATH WWGYVRHYIY DALPYFFHE
References (9)
| Title : Biochemical characterization of an engineered bifunctional xylanase\/feruloyl esterase and its synergistic effects with cellulase on lignocellulose hydrolysis - Wang_2022_Bioresour.Technol_355_127244 |
| Author(s) : Wang H , Qi X , Gao S , Zhang Y , An Y |
| Ref : Bioresour Technol , 355 :127244 , 2022 |
| Abstract : |
| PubMedSearch : Wang_2022_Bioresour.Technol_355_127244 |
| PubMedID: 35489578 |
| Gene_locus related to this paper: clotm-xyny , preru-c0ljn0 |
| Title : ID30A-3 (MASSIF-3) - a beamline for macromolecular crystallography at the ESRF with a small intense beam - von Stetten_2020_J.Synchrotron.Radiat_27_844 |
| Author(s) : von Stetten D , Carpentier P , Flot D , Beteva A , Caserotto H , Dobias F , Guijarro M , Giraud T , Lentini M , McSweeney S , Royant A , Petitdemange S , Sinoir J , Surr J , Svensson O , Theveneau P , Leonard GA , Mueller-Dieckmann C |
| Ref : J Synchrotron Radiat , 27 :844 , 2020 |
| Abstract : |
| PubMedSearch : von Stetten_2020_J.Synchrotron.Radiat_27_844 |
| PubMedID: 32381789 |
| Gene_locus related to this paper: clotm-xyny |
| Title : ID30B - a versatile beamline for macromolecular crystallography experiments at the ESRF - McCarthy_2018_J.Synchrotron.Radiat_25_1249 |
| Author(s) : McCarthy AA , Barrett R , Beteva A , Caserotto H , Dobias F , Felisaz F , Giraud T , Guijarro M , Janocha R , Khadrouche A , Lentini M , Leonard GA , Lopez Marrero M , Malbet-Monaco S , McSweeney S , Nurizzo D , Papp G , Rossi C , Sinoir J , Sorez C , Surr J , Svensson O , Zander U , Cipriani F , Theveneau P , Mueller-Dieckmann C |
| Ref : J Synchrotron Radiat , 25 :1249 , 2018 |
| Abstract : |
| PubMedSearch : McCarthy_2018_J.Synchrotron.Radiat_25_1249 |
| PubMedID: 29979188 |
| Gene_locus related to this paper: clotm-xyny |
| Title : RoboDiff: combining a sample changer and goniometer for highly automated macromolecular crystallography experiments - Nurizzo_2016_Acta.Crystallogr.D.Struct.Biol_72_966 |
| Author(s) : Nurizzo D , Bowler MW , Caserotto H , Dobias F , Giraud T , Surr J , Guichard N , Papp G , Guijarro M , Mueller-Dieckmann C , Flot D , McSweeney S , Cipriani F , Theveneau P , Leonard GA |
| Ref : Acta Crystallographica D Struct Biol , 72 :966 , 2016 |
| Abstract : |
| PubMedSearch : Nurizzo_2016_Acta.Crystallogr.D.Struct.Biol_72_966 |
| PubMedID: 27487827 |
| Gene_locus related to this paper: clotm-xyny |
| Title : In-house UV radiation-damage-induced phasing of selenomethionine-labeled protein structures - Pereira_2013_J.Struct.Biol_181_89 |
| Author(s) : Pereira PJ , Royant A , Panjikar S , de Sanctis D |
| Ref : J Struct Biol , 181 :89 , 2013 |
| Abstract : |
| PubMedSearch : Pereira_2013_J.Struct.Biol_181_89 |
| PubMedID: 23178456 |
| Gene_locus related to this paper: clotm-xyny |
| Title : Recent progress in robot-based systems for crystallography and their contribution to drug discovery - Ferrer_2013_Expert.Opin.Drug.Discov_8_835 |
| Author(s) : Ferrer JL , Larive NA , Bowler MW , Nurizzo D |
| Ref : Expert Opin Drug Discov , 8 :835 , 2013 |
| Abstract : |
| PubMedSearch : Ferrer_2013_Expert.Opin.Drug.Discov_8_835 |
| PubMedID: 23656378 |
| Gene_locus related to this paper: clotm-xyny |
| Title : Molecular determinants of substrate specificity in the feruloyl esterase module of xylanase 10B from Clostridium thermocellum - Tarbouriech_2005_Acta.Crystallogr.D.Biol.Crystallogr_61_194 |
| Author(s) : Tarbouriech N , Prates JA , Fontes CM , Davies GJ |
| Ref : Acta Crystallographica D Biol Crystallogr , 61 :194 , 2005 |
| Abstract : |
| PubMedSearch : Tarbouriech_2005_Acta.Crystallogr.D.Biol.Crystallogr_61_194 |
| PubMedID: 15681871 |
| Gene_locus related to this paper: clotm-xyny |
| Title : The Structure of the Feruloyl Esterase Module of Xylanase 10B from Clostridium thermocellum Provides Insights into Substrate Recognition - Prates_2001_Structure_9_1183 |
| Author(s) : Prates JA , Tarbouriech N , Charnock SJ , Fontes CM , Ferreira LM , Davies GJ |
| Ref : Structure , 9 :1183 , 2001 |
| Abstract : |
| PubMedSearch : Prates_2001_Structure_9_1183 |
| PubMedID: 11738044 |
| Gene_locus related to this paper: clotm-xyny |
| Title : Evidence for a general role for non-catalytic thermostabilizing domains in xylanases from thermophilic bacteria. - Fontes_1995_Biochem.J_307_151 |
| Author(s) : Fontes CM , Hazelwood GP , Morag E , Hall J , Hirst BH , Gilbert HJ |
| Ref : Biochemical Journal , 307 :151 , 1995 |
| Abstract : |
| PubMedSearch : Fontes_1995_Biochem.J_307_151 |
| PubMedID: 7717969 |
| Gene_locus related to this paper: clotm-xyny |