Gene_Locus Report

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Gene_locus Report for: 9bras-r0ieh8

Capsella rubella. AB hydrolase-1 domain-containing protein

Relationship
Family|Auxin-response-4
Block| X
Position in NCBI Life Tree|Capsella rubella
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > rosids: N E > malvids: N E > Brassicales: N E > Brassicaceae: N E > Camelineae: N E > Capsella: N E > Capsella rubella: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : KB870806, XP_006302225
1 UniProt : R0IEH8
1 UniProt : R0IEH8
1 Interpro : R0IEH8
1 Pfam : R0IEH8
1 PIRSF : R0IEH8
1 SUPERFAM : R0IEH8
Sequence
Graphical view for this peptide sequence: 9bras-r0ieh8
Colored MSA for Auxin-response-4 (raw)
MAIITEEEEETKTLIPPKKKVQNLKPESSNPKPQTQNPFPFWFYSTLIVS
LATLIFISLSLFSSHNDPRSWFLSLPPDLRQHYSDGRTIKVQVNPDESPI
EVFVAESGSIYTENVVIVHGLGLSSFGFKEVIQSLGSKGFHGVAIDLPGN
GFSDKSMVVIGGGDREIGFVGRVKEVYGLIQEKGVFWAFDQMVETGDLPY
EEIIKIQNSKRRSLKAIELGSEETARVLGQVIDTLGLAPVHLVLHDSALG
LASNWVSENYPSVRSITLIDSSVSPALPLWVLNLPGVREVLLGFSFGFQK
LVSLRCSKEMTLSEIEAHRILLKGRNGREAVVASLNKLNHSFDIGLWGNS
DGISGIPMQVIWSREGSKEWSDEGQCVVKALPKAKFVTHSGSRWPQESKS
GELADYISEFVSQLPRSTRRVTEEPIPENVQKVLEEAKTGGESGDHDHGH
AHAGYTDAYGLGEEWTS
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MAIITEEEEETKTLIPPKKKVQNLKPESSNPKPQTQNPFPFWFYSTLIVS
LATLIFISLSLFSSHNDPRSWFLSLPPDLRQHYSDGRTIKVQVNPDESPI
EVFVAESGSIYTENVVIVHGLGLSSFGFKEVIQSLGSKGFHGVAIDLPGN
GFSDKSMVVIGGGDREIGFVGRVKEVYGLIQEKGVFWAFDQMVETGDLPY
EEIIKIQNSKRRSLKAIELGSEETARVLGQVIDTLGLAPVHLVLHDSALG
LASNWVSENYPSVRSITLIDSSVSPALPLWVLNLPGVREVLLGFSFGFQK
LVSLRCSKEMTLSEIEAHRILLKGRNGREAVVASLNKLNHSFDIGLWGNS
DGISGIPMQVIWSREGSKEWSDEGQCVVKALPKAKFVTHSGSRWPQESKS
GELADYISEFVSQLPRSTRRVTEEPIPENVQKVLEEAKTGGESGDHDHGH
AHAGYTDAYGLGEEWTS


Reference
    Title: The Capsella rubella genome and the genomic consequences of rapid mating system evolution
    Slotte T, Hazzouri KM, Agren JA, Koenig D, Maumus F, Guo YL, Steige K, Platts AE, Escobar JS and Wright SI <26 more author(s)>
    Ref: Nat Genet, 45:831, 2013 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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