Gene_locus Report for: bovin-a7mb66 Bos taurus (Bovine). Abhydrolase domain containing 13
Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) > cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Craniata: N E > Vertebrata: N E > Gnathostomata: N E > Teleostomi: N E > Euteleostomi: N E > Sarcopterygii: N E > Dipnotetrapodomorpha: N E > Tetrapoda: N E > Amniota: N E > Mammalia: N E > Theria: N E > Eutheria: N E > Boreoeutheria: N E > Laurasiatheria: N E > Cetartiodactyla: N E > Ruminantia: N E > Pecora: N E > Bovidae: N E > Bovinae: N E > Bos: N E > Bos taurus: N E
A85-EsteraseD-FGH :
bovin-estd Bos taurus (Bovine) Esterase D .
ABHD6-Lip :
bovin-q1lz86 Bos taurus (Bovine) similar to abhydrolase domain containing 6 .
ABHD8 :
bovin-abhd8 Bos taurus (Bovine); Bos mutus (wild yak) abhydrolase domain-containing protein 8 (EC 3.-.-.-) .
ABHD10 :
bovin-ABHDA Bos taurus (Bovine); Bos mutus (wild yak) abhydrolase domain containing 10 .
ABHD11-Acetyl_transferase :
bovin-q3sz73 Bos taurus (Bovine) abhydrolase domain containing 11 .
ABHD12-PHARC :
bovin-f1mps6 Bos taurus (Bovine) Uncharacterized protein ,
bovin-q08dw9 Bos taurus (Bovine), Bos mutus (wild Yak) abhydrolase domain containing protein 12 .
ABHD16 :
bovin-ABHD16A Bos taurus (Bovine) Phosphatidylserine lipase ABHD16A HLA-B-associated transcript 5 BAT5 ,
bovin-ABHD16B Bos taurus (Bovine); Bos mutus (wild yak) Abhydrolase domain containing 16B .
ABHD17-depalmitoylase :
bovin-AB17A Bos taurus (Bovine) Abhydrolase domain-containing protein FAM108A ,
bovin-AB17C Bos taurus (Bovine) Abhydrolase domain-containing protein FAM108C1 .
ABHD18 :
bovin-f1n673 Bos taurus (Bovine). Uncharacterized protein .
abh_upf0017 :
bovin-abhd1 Bos taurus (Bovine) lung alpha/beta hydrolase 1 (Labh1-pending) hypothetical protein mgc127615 ,
bovin-abhd2 Bos taurus (Bovine) alpha/beta hydrolase domain containing protein 2 ,
bovin-abhd3 Bos taurus (Bovine) Abhydrolase domain-containing protein 3 ,
bovin-e1bkm2 Bos taurus (Bovine) Abhydrolase domain containing 15 .
ACHE :
bovin-ACHE Bos taurus protein for acetylcholinesterase T subunit .
Acidic_Lipase :
bovin-1lipg Bos taurus (Bovine) Gastric triacylglycerol lipase ,
bovin-e1ba50 Bos taurus (Bovine) Lipase ,
bovin-e1bnt1 Bos taurus (Bovine) Lipase LIPJ ,
bovin-f1msa3 Bos taurus (Bovine) Lipase LIPK ,
bovin-f1n110 Bos taurus (Bovine) Lipase .
ACPH_Peptidase_S9 :
bovin-acph Bos taurus (Bovine) Acylaminoacyl-peptidase .
Arb2_FAM172A :
bovin-a0a3q1nm09 Bos taurus (Bovine); Bos mutus (wild yak). Uncharacterized protein .
Arylacetamide_deacetylase :
bovin-aaad Bos taurus (Bovine); Bos mutus (Bovine, wild yak) Arylacetamide deacetylase ,
bovin-nceh1 Bos taurus (Bovine); Bos mutus Arylacetamide deacetylase-like 1 ,
bovin-g5e5g5 Bos taurus (Bovine). Uncharacterized protein ,
bovin-g5e5i3 Bos taurus (Bovine). Uncharacterized protein .
BCHE :
bovin-BCHE Bos taurus (Bovine), Bos mutus (wild yak) butyrylcholinesterase .
Carboxypeptidase_S10 :
bovin-ppgb Bos taurus (Bovine) Lysosomal protective protein Cathepsin A Peptidase_S10 mgc128937 ,
bovin-q2nkz9 Bos taurus (Bovine) similar to serine carboxypeptidase 1 protein .
Carb_B_Chordata :
bovin-e1bn79 Bos taurus (Bovine) Bos mutus (Yak) cauxin ,
bovin-est8 Bos taurus (Bovine) Bos mutus (Yak) Carboxylesterase 4A (Carboxylesterase 8) UNQ440/PRO873 homolog ,
bovin-f1mi11 Bos taurus (Bovine) Bos mutus (Yak) Uncharacterized protein ,
bovin-q2kj30 Bos taurus (Bovine), Bos mutus (Yak) hypothetical protein ,
bovin-q3t0r6 Bos taurus (Bovine), Bos mutus (Yak) hypothetical protein mgc127393 ,
bovin-q5myb8 Bos taurus (Bovine) retinyl ester hydrolase type 1 breh1 .
CGI-58_ABHD5_ABHD4 :
bovin-abhd4 Bos taurus (Bovine) abhydrolase domain containing protein 4 Lyso-N-acylphosphatidylethanolamine lipase ,
bovin-q0vcc8 Bos taurus (Bovine) Abhydrolase domain containing 5 .
Cholesterol_esterase :
bovin-balip Bos taurus (Bovine) Bos mutus (Yak) protein for bile-salt-activated lipase.
CIB-CCG1-interacting-factor-B :
bovin-abheb Bos taurus (Bovine) Abhydrolase domain-containing protein 14B ,
bovin-f1mr65 Bos taurus (Bovine) Uncharacterized protein .
CMBL :
bovin-f1n2i5 Bos taurus (Bovine); Bos indicus x Bos taurus (Hybrid cattle); Bos mutus (wild yak). Carboxymethylenebutenolidase homolog .
DPP4N_Peptidase_S9 :
bovin-a0jnh8 Bos taurus (Bovine) Dipeptidyl-peptidase 10 ,
bovin-a5d7b7 Bos taurus (Bovine) Uncharacterized protein ,
bovin-dpp4 Bos taurus (Bovine) dipeptidyl peptidase IV ,
bovin-dpp6 Bos taurus (Bovine) related protein) (dipeptidylpeptidase VI) (dppx) ,
bovin-e1bi31 Bos taurus (Bovine) Uncharacterized protein ,
bovin-f1n1l4 Bos taurus (Bovine) Uncharacterized protein .
Duf_676 :
bovin-e1bpw3 Bos taurus (Bovine) Uncharacterized protein ,
bovin-f1mcd9 Bos taurus (Bovine) Uncharacterized protein .
Duf_829 :
bovin-tmm53 Bos taurus (Bovine) Transmembrane protein 53 .
Epoxide_hydrolase :
bovin-q3zcj6 Bos taurus (Bovine) hypothetical protein mgc126963 .
FSH1 :
bovin-OVCA2 Bos taurus (Bovine); Bos mutus (wild yak) hypothetical protein mgc128661 .
Hepatic_Lipase :
bovin-q3sz79 Bos taurus (Bovine); Bos mutus grunniens (Wild yak) (Bos grunniens) lipase, hepatic .
Hormone-sensitive_lipase_like :
bovin-hslip Bos taurus (Bovine) 17.6 kda hormone-sensitive lipase (fragment) .
Kynurenine-formamidase :
bovin-e1bll5 Bos taurus (Bovine). N-formylkynurenine formamidase .
Lipase_3 :
bovin-e1bbv2 Bos taurus (Bovine); Bos mutus (wild yak) Uncharacterized protein .
Lipoprotein_Lipase :
bovin-lipli Bos taurus; Bos mutus grunniens (Wild yak) (Bos grunniens); Bubalus bubalis (Domestic water buffalo) lipoprotein lipase,
bovin-LIPG Bos taurus; Bos mutus (wild yak) lipase G, endothelial type (LIPG) .
LYsophospholipase_carboxylesterase :
bovin-lypa1 Bos taurus (Bovine) lysophospholipase I .
Maspardin-ACP33-SPG21_like :
bovin-SPG21 Bos taurus (Bovine); Bos mutus (wild Yak) hypothetical protein acid cluster protein 33 ACP33 SPG21 maspardin .
MEST-like :
bovin-q2hjm9 Bos taurus (Bovine) mesoderm-specific transcript Paternally-expressed gene 1 peg1 (fragment) .
Ndr_family :
bovin-ndr1 Bos taurus (Bovine) hypothetical protein mgc127533 ,
bovin-ndrg2 Bos taurus (Bovine) mgc128884 Protein NDRG2 ,
bovin-ndrg3 Bos taurus (Bovine) Protein NDRG3 ,
bovin-q0vck8 Bos taurus (Bovine) Uncharacterized protein .
Neuroligin :
bovin-2neur Bos taurus (Bovine), Bos mutus (Wild Yak) NLGN2 Neuroligin 2 ,
bovin-3neur Bos taurus (Bovine) similar to neuroligin 3 ,
bovin-g3mxp5 Bos taurus (Bovine) Bos mutus (Yak) Neuroligin-3 .
NLS3-Tex30 :
bovin-KANSL3 Bos taurus (Bovine) Bos Mutus (Yak) LOC618190 protein ,
bovin-TEX30 Bos taurus (Bovine), Bos mutus (Yak) Testis-expressed sequence 30 protein, C13orf27 homolog .
PAF-Acetylhydrolase :
bovin-paf2 Bos taurus (Bovine) (EC 3.1.1.47) (serine dependent phospholipase a2) ,
bovin-pafa Bovine plasma PAF acetylhydrolase .
Palmitoyl-protein_thioesterase :
bovin-ppt Bos taurus palmitoyl-protein thioesterase mRNA, complete cds,
bovin-ppt2 Bos taurus (Bovine) Lysosomal thioesterase PPT2 .
Pancreatic_lipase :
bovin-lipr2 Bos taurus (Bovine); Bos mutus (wild yak) Pancreatic lipase-related protein 2 Can hydrolyze both phospholipids and galactolipids ,
bovin-e1bjq9 Bos taurus (Bovine); Bos mutus (wild yak). Pancreatic lipase ,
bovin-f1mc21 Bos taurus (Bovine); Bos mutus (wild yak). Pancreatic lipase .
PC-sterol_acyltransferase :
bovin-lcat Bos taurus (Bovine) phosphatidylcholine-sterol acyltransferase ,
bovin-LPLA2 Bos taurus (Bovine) lysosomal phospholipase a2 ( lysophospholipase 3) .
Pectinacetylesterase-Notum :
bovin-f1mbd6 Bos taurus (Bovine) palmitoleoyl-protein carboxylesterase NOTUM .
PGAP1 :
bovin-e1bnq0 Bos taurus (Bovine) Uncharacterized protein ,
bovin-srac1 Bos taurus (Bovine) Protein SERAC1 .
Phospholipase :
bovin-q5e9h0 Bos taurus (Bovine) phospholipase a1 member a ,
bovin-f1mxa8 Bos taurus (Bovine). Lipase H .
PPase_methylesterase_euk :
bovin-ppme1 Bos taurus (Bovine) protein phosphatase methylesterase-1 .
Prolylcarboxypeptidase :
bovin-a6qnx2 Bos taurus (Bovine) DPP7 protein ,
bovin-q2ta14 Bos taurus (Bovine) hypothetical protein .
S9N_PPCE_Peptidase_S9 :
bovin-ppce Bos taurus (Bovine) (PE) .
SERHL :
bovin-f1n385 Bos taurus (Bovine); Bos mutus (wild yak) Uncharacterized protein .
Thioesterase :
bovin-fas Bos taurus (Bovine) oleoyl-[acyl-carrier-protein] hydrolase (EC 3.1.2.14) .
Thyroglobulin :
bovin-thyro Bos taurus (Bovine) Thyroglobulin.
Valacyclovir-hydrolase :
bovin-q2kix6 Bos taurus (Bovine) Biphenyl hydrolase-like Serine hydrolase; breast epithelial mucin-associated antigen
Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: bovin-a7mb66 Colored MSA for ABHD13-BEM46 (raw)
MEKSWMLWNFVERWLVALASWSWALCRISLLSLIVTFHLYGGIVLLLLIF
ISIAGILYKFQDVLLYFPEQPSSSRLYVPMPTGIPHENIFIRTKDGVRLN
LILIRYTGDSSPYSPTIIYFHGNAGNIGHRLPNALLMLVNLKVNLLLVDY
RGYGKSEGEASEEGLYLDSEAVLDYVMTRPDLDKTKIFLFGRSLGGAVAI
HLASENSHRISAIMVENTFLSIPHMASTLFSFFPMRYLPLWCYKNKFLSY
RKISQCRMPSLFISGLSDQLIPPVMMKQLYELSPSRTKRLAIFPDGTHND
TWQCQGYFTALEQFIKEVIKSPSPEEMAKTSSNVTII
Legend
This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA
M E K S W M L W N F V E R W L V A L A S W S W A L C R I S L L S L I V T F H L Y G G I V L L L L I F I S I A G I L Y K F Q D V L L Y F P E Q P S S S R L Y V P M P T G I P H E N I F I R T K D G V R L N L I L I R Y T G D S S P Y S P T I I Y F H G N A G N I G H R L P N A L L M L V N L K V N L L L V D Y R G Y G K S E G E A S E E G L Y L D S E A V L D Y V M T R P D L D K T K I F L F G R S L G G A V A I H L A S E N S H R I S A I M V E N T F L S I P H M A S T L F S F F P M R Y L P L W C Y K N K F L S Y R K I S Q C R M P S L F I S G L S D Q L I P P V M M K Q L Y E L S P S R T K R L A I F P D G T H N D T W Q C Q G Y F T A L E Q F I K E V I K S P S P E E M A K T S S N V T I I
Reference
Title: A whole-genome assembly of the domestic cow, Bos taurus
Zimin AV , Delcher AL , Florea L , Kelley DR , Schatz MC , Puiu D , Hanrahan F , Pertea G , Van Tassell CP and Salzberg SL <5 more author(s)>
Zimin AV , Delcher AL , Florea L , Kelley DR , Schatz MC , Puiu D , Hanrahan F , Pertea G , Van Tassell CP , Sonstegard TS , Marcais G , Roberts M , Subramanian P , Yorke JA , Salzberg SL (- 5)
Ref: Genome Biol, 10 :R42, 2009 : PubMed Abstract ESTHER: Zimin_2009_Genome.Biol_10_R42 PubMedSearch: Zimin 2009 Genome.Biol 10 R42 PubMedID: 19393038 Gene_locus related to this paper: bovin-1lipg ,
bovin-ABHD16A ,
bovin-e1ba50 ,
bovin-e1bbv2 ,
bovin-e1bkm2 ,
bovin-e1bnq0 ,
bovin-e1bnt1 ,
bovin-e1bpw3 ,
bovin-f1mcd9 ,
bovin-f1mps6 ,
bovin-f1msa3 ,
bovin-f1n110 ,
bovin-f1n385 ,
bovin-hslip ,
bovin-KANSL3 ,
bovin-ndrg2 ,
bovin-q0vck8 ,
bovin-q2kix6 ,
bovin-q2ta14 ,
bovin-q3sz73 ,
bovin-q3sz79 ,
bovin-f1n673 ,
bovin-e1bll5 ,
bovin-g5e5g5 ,
bovin-g5e5i3 ,
bovin-e1bjq9 ,
bovin-f1mc21 ,
bovin-a0a3q1nm09 ,
bovin-a7mb66 Abstract
BACKGROUND: The genome of the domestic cow, Bos taurus, was sequenced using a mixture of hierarchical and whole-genome shotgun sequencing methods. RESULTS: We have assembled the 35 million sequence reads and applied a variety of assembly improvement techniques, creating an assembly of 2.86 billion base pairs that has multiple improvements over previous assemblies: it is more complete, covering more of the genome; thousands of gaps have been closed; many erroneous inversions, deletions, and translocations have been corrected; and thousands of single-nucleotide errors have been corrected. Our evaluation using independent metrics demonstrates that the resulting assembly is substantially more accurate and complete than alternative versions. CONCLUSIONS: By using independent mapping data and conserved synteny between the cow and human genomes, we were able to construct an assembly with excellent large-scale contiguity in which a large majority (approximately 91%) of the genome has been placed onto the 30 B. taurus chromosomes. We constructed a new cow-human synteny map that expands upon previous maps. We also identified for the first time a portion of the B. taurus Y chromosome.
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