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Puiu D

References (11)

Title : The first near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum - Zimin_2017_Gigascience_6_1
Author(s) : Zimin AV , Puiu D , Hall R , Kingan S , Clavijo BJ , Salzberg SL
Ref : Gigascience , 6 :1 , 2017
Abstract :
PubMedSearch : Zimin_2017_Gigascience_6_1
PubMedID: 29069494
Gene_locus related to this paper: wheat-a0a3b6mrw5 , wheat-a0a1d5uwn5 , wheat-a0a3b6atp7 , wheat-a0a3b6c2a8 , wheat-a0a3b6lu59

Title : First Draft Assembly and Annotation of the Genome of a California Endemic Oak Quercus lobata Ne (Fagaceae) - Sork_2016_G3.(Bethesda)_6_3485
Author(s) : Sork VL , Fitz-Gibbon ST , Puiu D , Crepeau M , Gugger PF , Sherman R , Stevens K , Langley CH , Pellegrini M , Salzberg SL
Ref : G3 (Bethesda) , 6 :3485 , 2016
Abstract :
PubMedSearch : Sork_2016_G3.(Bethesda)_6_3485
PubMedID: 27621377
Gene_locus related to this paper: quelo-a0a7n2rbl4 , quelo-a0a7n2mne3 , quelo-a0a7n2mpu3

Title : The walnut (Juglans regia) genome sequence reveals diversity in genes coding for the biosynthesis of non-structural polyphenols - Martinez-Garcia_2016_Plant.J_87_507
Author(s) : Martinez-Garcia PJ , Crepeau MW , Puiu D , Gonzalez-Ibeas D , Whalen J , Stevens KA , Paul R , Butterfield TS , Britton MT , Reagan RL , Chakraborty S , Walawage SL , Vasquez-Gross HA , Cardeno C , Famula RA , Pratt K , Kuruganti S , Aradhya MK , Leslie CA , Dandekar AM , Salzberg SL , Wegrzyn JL , Langley CH , Neale DB
Ref : Plant J , 87 :507 , 2016
Abstract :
PubMedSearch : Martinez-Garcia_2016_Plant.J_87_507
PubMedID: 27145194
Gene_locus related to this paper: jugre-a0a2i4fez2 , jugre-a0a2i4h0n2 , jugre-a0a2i4gzr6 , jugre-a0a2i4hni2 , jugre-a0a2i4gla1 , jugre-a0a2i4e0e6 , jugre-a0a2i4es54 , jugre-a0a2i4e9m5 , jugre-a0a2i4hql8 , jugre-a0a2i4gf09 , jugre-a0a2i4fj48 , jugre-a0a2i4flz2

Title : The genomes of two key bumblebee species with primitive eusocial organization - Sadd_2015_Genome.Biol_16_76
Author(s) : Sadd BM , Barribeau SM , Bloch G , de Graaf DC , Dearden P , Elsik CG , Gadau J , Grimmelikhuijzen CJ , Hasselmann M , Lozier JD , Robertson HM , Smagghe G , Stolle E , Van Vaerenbergh M , Waterhouse RM , Bornberg-Bauer E , Klasberg S , Bennett AK , Camara F , Guigo R , Hoff K , Mariotti M , Munoz-Torres M , Murphy T , Santesmasses D , Amdam GV , Beckers M , Beye M , Biewer M , Bitondi MM , Blaxter ML , Bourke AF , Brown MJ , Buechel SD , Cameron R , Cappelle K , Carolan JC , Christiaens O , Ciborowski KL , Clarke DF , Colgan TJ , Collins DH , Cridge AG , Dalmay T , Dreier S , du Plessis L , Duncan E , Erler S , Evans J , Falcon T , Flores K , Freitas FC , Fuchikawa T , Gempe T , Hartfelder K , Hauser F , Helbing S , Humann FC , Irvine F , Jermiin LS , Johnson CE , Johnson RM , Jones AK , Kadowaki T , Kidner JH , Koch V , Kohler A , Kraus FB , Lattorff HM , Leask M , Lockett GA , Mallon EB , Antonio DS , Marxer M , Meeus I , Moritz RF , Nair A , Napflin K , Nissen I , Niu J , Nunes FM , Oakeshott JG , Osborne A , Otte M , Pinheiro DG , Rossie N , Rueppell O , Santos CG , Schmid-Hempel R , Schmitt BD , Schulte C , Simoes ZL , Soares MP , Swevers L , Winnebeck EC , Wolschin F , Yu N , Zdobnov EM , Aqrawi PK , Blankenburg KP , Coyle M , Francisco L , Hernandez AG , Holder M , Hudson ME , Jackson L , Jayaseelan J , Joshi V , Kovar C , Lee SL , Mata R , Mathew T , Newsham IF , Ngo R , Okwuonu G , Pham C , Pu LL , Saada N , Santibanez J , Simmons D , Thornton R , Venkat A , Walden KK , Wu YQ , Debyser G , Devreese B , Asher C , Blommaert J , Chipman AD , Chittka L , Fouks B , Liu J , O'Neill MP , Sumner S , Puiu D , Qu J , Salzberg SL , Scherer SE , Muzny DM , Richards S , Robinson GE , Gibbs RA , Schmid-Hempel P , Worley KC
Ref : Genome Biol , 16 :76 , 2015
Abstract :
PubMedSearch : Sadd_2015_Genome.Biol_16_76
PubMedID: 25908251

Title : Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp - Bogdanove_2011_J.Bacteriol_193_5450
Author(s) : Bogdanove AJ , Koebnik R , Lu H , Furutani A , Angiuoli SV , Patil PB , Van Sluys MA , Ryan RP , Meyer DF , Han SW , Aparna G , Rajaram M , Delcher AL , Phillippy AM , Puiu D , Schatz MC , Shumway M , Sommer DD , Trapnell C , Benahmed F , Dimitrov G , Madupu R , Radune D , Sullivan S , Jha G , Ishihara H , Lee SW , Pandey A , Sharma V , Sriariyanun M , Szurek B , Vera-Cruz CM , Dorman KS , Ronald PC , Verdier V , Dow JM , Sonti RV , Tsuge S , Brendel VP , Rabinowicz PD , Leach JE , White FF , Salzberg SL
Ref : Journal of Bacteriology , 193 :5450 , 2011
Abstract :
PubMedSearch : Bogdanove_2011_J.Bacteriol_193_5450
PubMedID: 21784931
Gene_locus related to this paper: xanax-XAC4055 , xanca-CATD , xanca-estA1 , xanca-XCC0080 , xanca-XCC3164 , xanor-q5h5n1

Title : Draft genome sequence of the oilseed species Ricinus communis - Chan_2010_Nat.Biotechnol_28_951
Author(s) : Chan AP , Crabtree J , Zhao Q , Lorenzi H , Orvis J , Puiu D , Melake-Berhan A , Jones KM , Redman J , Chen G , Cahoon EB , Gedil M , Stanke M , Haas BJ , Wortman JR , Fraser-Liggett CM , Ravel J , Rabinowicz PD
Ref : Nat Biotechnol , 28 :951 , 2010
Abstract :
PubMedSearch : Chan_2010_Nat.Biotechnol_28_951
PubMedID: 20729833
Gene_locus related to this paper: ricco-b9r7h7 , ricco-b9re31 , ricco-b9rgi7 , ricco-b9riy7 , ricco-b9rlg6 , ricco-b9rm64 , ricco-b9rsg5 , ricco-b9rtk6 , ricco-b9rtt3 , ricco-b9ry83 , ricco-b9s8p2 , ricco-b9s817 , ricco-b9sby7 , ricco-b9scn1 , ricco-b9scn2 , ricco-b9scn3 , ricco-b9scn5 , ricco-b9ssj7 , ricco-b9ssj8 , ricco-b9sx01 , ricco-b9szu0 , ricco-b9t4l4 , ricco-b9t5x2 , ricco-b9tb84 , ricco-b9rkb0 , ricco-b9rru1 , ricco-b9rdy5 , ricco-b9tey4 , ricco-b9sfw5 , ricco-b9sjw6 , ricco-b9shs6 , ricco-b9rsl2 , ricco-b9r7f8 , ricco-b9rne4 , ricco-b9r8z8 , ricco-b9rf65 , ricco-b9rjk8 , ricco-b9sip5 , ricco-b9t3r4 , ricco-b9rd08

Title : Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis - Dalloul_2010_PLoS.Biol_8_E1000475
Author(s) : Dalloul RA , Long JA , Zimin AV , Aslam L , Beal K , Blomberg Le A , Bouffard P , Burt DW , Crasta O , Crooijmans RP , Cooper K , Coulombe RA , De S , Delany ME , Dodgson JB , Dong JJ , Evans C , Frederickson KM , Flicek P , Florea L , Folkerts O , Groenen MA , Harkins TT , Herrero J , Hoffmann S , Megens HJ , Jiang A , de Jong P , Kaiser P , Kim H , Kim KW , Kim S , Langenberger D , Lee MK , Lee T , Mane S , Marcais G , Marz M , McElroy AP , Modise T , Nefedov M , Notredame C , Paton IR , Payne WS , Pertea G , Prickett D , Puiu D , Qioa D , Raineri E , Ruffier M , Salzberg SL , Schatz MC , Scheuring C , Schmidt CJ , Schroeder S , Searle SM , Smith EJ , Smith J , Sonstegard TS , Stadler PF , Tafer H , Tu ZJ , Van Tassell CP , Vilella AJ , Williams KP , Yorke JA , Zhang L , Zhang HB , Zhang X , Zhang Y , Reed KM
Ref : PLoS Biol , 8 : , 2010
Abstract :
PubMedSearch : Dalloul_2010_PLoS.Biol_8_E1000475
PubMedID: 20838655
Gene_locus related to this paper: melga-g1mv74 , melga-g1myh1 , melga-g1n3b6 , melga-g1n4i8 , melga-g1n8a7 , melga-g1nb53 , melga-g1ndd8 , melga-g1npu5 , melga-g3ur65 , melga-g3uur6 , melga-g1njn8 , melga-g1mrp7 , melga-g1mzw6 , melga-g1n2a7 , melga-g1n608 , melga-g1n2j6 , melga-g1n2k0 , melga-g1ncb6 , melga-g1nei5 , melga-g1n1j3 , melga-g1nfd3 , melga-g1nna9 , melga-h9h0c1 , melga-g1nnl1 , melga-g1nhb9 , melga-g1mtl7 , fical-u3jnn0 , melga-g1n332 , melga-g1mtx9 , melga-g1nns1 , melga-g1n829 , melga-g1nq47 , melga-g1mtq0

Title : A whole-genome assembly of the domestic cow, Bos taurus - Zimin_2009_Genome.Biol_10_R42
Author(s) : Zimin AV , Delcher AL , Florea L , Kelley DR , Schatz MC , Puiu D , Hanrahan F , Pertea G , Van Tassell CP , Sonstegard TS , Marcais G , Roberts M , Subramanian P , Yorke JA , Salzberg SL
Ref : Genome Biol , 10 :R42 , 2009
Abstract :
PubMedSearch : Zimin_2009_Genome.Biol_10_R42
PubMedID: 19393038
Gene_locus related to this paper: bovin-1lipg , bovin-ABHD16A , bovin-e1ba50 , bovin-e1bbv2 , bovin-e1bkm2 , bovin-e1bnq0 , bovin-e1bnt1 , bovin-e1bpw3 , bovin-f1mcd9 , bovin-f1mps6 , bovin-f1msa3 , bovin-f1n110 , bovin-f1n385 , bovin-hslip , bovin-KANSL3 , bovin-ndrg2 , bovin-q0vck8 , bovin-q2kix6 , bovin-q2ta14 , bovin-q3sz73 , bovin-q3sz79 , bovin-f1n673 , bovin-e1bll5 , bovin-g5e5g5 , bovin-g5e5i3 , bovin-e1bjq9 , bovin-f1mc21 , bovin-a0a3q1nm09 , bovin-a7mb66

Title : Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A - Salzberg_2008_BMC.Genomics_9_204
Author(s) : Salzberg SL , Sommer DD , Schatz MC , Phillippy AM , Rabinowicz PD , Tsuge S , Furutani A , Ochiai H , Delcher AL , Kelley D , Madupu R , Puiu D , Radune D , Shumway M , Trapnell C , Aparna G , Jha G , Pandey A , Patil PB , Ishihara H , Meyer DF , Szurek B , Verdier V , Koebnik R , Dow JM , Ryan RP , Hirata H , Tsuyumu S , Won Lee S , Seo YS , Sriariyanum M , Ronald PC , Sonti RV , Van Sluys MA , Leach JE , White FF , Bogdanove AJ
Ref : BMC Genomics , 9 :204 , 2008
Abstract :
PubMedSearch : Salzberg_2008_BMC.Genomics_9_204
PubMedID: 18452608
Gene_locus related to this paper: xanax-GAA , xanax-PTRB , xanax-XAC0628 , xanax-XAC0736 , xanax-XAC1713 , xanca-impep , xanca-XCC1105 , xanor-acvB , xanor-bioh , xanor-metx , xanor-q5gu74 , xanor-q5gvh6 , xanor-q5gy36 , xanor-q5gy47 , xanor-q5gz98 , xanor-q5h3e8 , xanor-q5h5n1 , xanor-q5h5w8 , xanor-q5h5x9 , xanor-q5h236 , xanor-Q93M73 , xanop-a0a0k0gpc4

Title : Genome of the opportunistic pathogen Streptococcus sanguinis - Xu_2007_J.Bacteriol_189_3166
Author(s) : Xu P , Alves JM , Kitten T , Brown A , Chen Z , Ozaki LS , Manque P , Ge X , Serrano MG , Puiu D , Hendricks S , Wang Y , Chaplin MD , Akan D , Paik S , Peterson DL , Macrina FL , Buck GA
Ref : Journal of Bacteriology , 189 :3166 , 2007
Abstract :
PubMedSearch : Xu_2007_J.Bacteriol_189_3166
PubMedID: 17277061
Gene_locus related to this paper: strsa-f0fga9 , strsv-a3cmd5 , strsv-a3cn30 , strsv-a3cn31 , strsv-a3cnb1 , strsv-a3cp66 , strsv-a3cpg5 , strsv-a3cqq7 , strsv-pepx , strsv-a3cnw9 , strsv-a3cm57

Title : The genome of Cryptosporidium hominis - Xu_2004_Nature_431_1107
Author(s) : Xu P , Widmer G , Wang Y , Ozaki LS , Alves JM , Serrano MG , Puiu D , Manque P , Akiyoshi D , Mackey AJ , Pearson WR , Dear PH , Bankier AT , Peterson DL , Abrahamsen MS , Kapur V , Tzipori S , Buck GA
Ref : Nature , 431 :1107 , 2004
Abstract :
PubMedSearch : Xu_2004_Nature_431_1107
PubMedID: 15510150
Gene_locus related to this paper: crypv-q5cph4 , crypv-q5cpw0 , crypv-q5cpw1 , crypv-q5cq27 , crypv-q5cq66 , crypv-q5cqb9 , crypv-q5cr67 , crypv-q5cre8 , crypv-q5cs81 , crypv-q5cv08 , crypv-q5cv20