Gene_Locus Report

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Gene_locus Report for: calja-f7id21

Callithrix jacchus (White-tufted-ear marmoset) Uncharacterized protein

Comment
Curious differences in two sequences Pseudogene?


Relationship
Family|Thyroglobulin
Block| C
Position in NCBI Life Tree|Callithrix jacchus
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Craniata: N E > Vertebrata: N E > Gnathostomata: N E > Teleostomi: N E > Euteleostomi: N E > Sarcopterygii: N E > Dipnotetrapodomorpha: N E > Tetrapoda: N E > Amniota: N E > Mammalia: N E > Theria: N E > Eutheria: N E > Boreoeutheria: N E > Euarchontoglires: N E > Primates: N E > Haplorrhini: N E > Simiiformes: N E > Platyrrhini: N E > Cebidae: N E > Callitrichinae: N E > Callithrix [genus]: N E > Callithrix [subgenus]: N E > Callithrix jacchus: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
Sequence
Graphical view for this peptide sequence: calja-f7id21
Colored MSA for Thyroglobulin (raw)
HGKLLGRSQAIQVGTSWKQVDQFLGVPYAAPPLAERRFRAPEPLNWTGSW
DASKLRASCWQPGTRTSMSPGVSEDCLYLNVFIPQNVAPNTSVLVFFHNT
MEGKGSEGWPAIDGSFLAAVGNLIVVTASYRVGVFGFLSSGSGEVSGNWG
LLDQVAALTWVQTHIRAFGGDPRRVSLAADRGGADVASIHLLTARATNSR
LFRRAVLMGGSALSPAAIISHERAQQQAVALAKEVSCPMSSSQEVVSCLR
QKPASVLNDAQTKLLAVSGPFHYWSPVVDGQFLREAPARALKRTLQVEVD
LLIGSSQDDGLINRAKAVKQFEESQGRTSSKTAFYQALQNSLGGEDSDAR
VEAAATWYYSLEHSSDDYASFSRALENATRDYFITCPIIDMASAWAKRTR
GNVFMYHAPKSYGHGSLELLVDVQFAFGLPFYPAYEGQFSLEEKSLSLKI
MQYFSHFIRSGNPNYPYEFSRKVPDFASPWPDFVPSAGGENYKEFSTQLP
NRQGLKKADCSFWSKYISSLKASADGAKGGQLAESEEEELTAGSGVKEDL
LSLQEPYSK
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

HGKLLGRSQAIQVGTSWKQVDQFLGVPYAAPPLAERRFRAPEPLNWTGSW
DASKLRASCWQPGTRTSMSPGVSEDCLYLNVFIPQNVAPNTSVLVFFHNT
MEGKGSEGWPAIDGSFLAAVGNLIVVTASYRVGVFGFLSSGSGEVSGNWG
LLDQVAALTWVQTHIRAFGGDPRRVSLAADRGGADVASIHLLTARATNSR
LFRRAVLMGGSALSPAAIISHERAQQQAVALAKEVSCPMSSSQEVVSCLR
QKPASVLNDAQTKLLAVSGPFHYWSPVVDGQFLREAPARALKRTLQVEVD
LLIGSSQDDGLINRAKAVKQFEESQGRTSSKTAFYQALQNSLGGEDSDAR
VEAAATWYYSLEHSSDDYASFSRALENATRDYFITCPIIDMASAWAKRTR
GNVFMYHAPKSYGHGSLELLVDVQFAFGLPFYPAYEGQFSLEEKSLSLKI
MQYFSHFIRSGNPNYPYEFSRKVPDFASPWPDFVPSAGGENYKEFSTQLP
NRQGLKKADCSFWSKYISSLKASADGAKGGQLAESEEEELTAGSGVKEDL
LSLQEPYSK



No Reference

Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
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