Gene_Locus Report

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Gene_locus Report for: clold-d8gi04

Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC) Putative lipase with a cell wall binding domain

Comment
only c-term Pfam A Abhydrolase_5 477 712


Relationship
Family|Bacterial_EstLip_FamX
Block| X
Position in NCBI Life Tree|Clostridium ljungdahlii
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Terrabacteria group: N E > Firmicutes: N E > Clostridia: N E > Clostridiales: N E > Clostridiaceae: N E > Clostridium: N E > Clostridium ljungdahlii: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : CP001666
1 UniProt : D8GI04
1 UniProt : D8GI04
1 Interpro : D8GI04
1 Pfam : D8GI04
1 PIRSF : D8GI04
1 SUPERFAM : D8GI04
Sequence
Graphical view for this peptide sequence: clold-d8gi04
Colored MSA for Bacterial_EstLip_FamX (raw)
IKYDNDGKVYDFTSEAAPVESNYKLPTYVNIDNFTEKNVAIGDEKYKLPG
VLSIPKGKGPFPAVVLVHGSGANDMDETYGDTKVFKDISAGLASKGIAVL
RYNKRSNEYPSLTAIDTKLDLNKETVNDAVDAVKLLKKTKEIDSSKVFVL
GHSQGAMLTPTILKDCGNSGAAGGIMMAGPVDFLDTLLEQSKYLNSIGYM
DEDNLKYIQNLYDLVKNNKDFPKNISENTIIFHAYPYYWLSVKNSTQAQD
AVDIKNPLLILQGKRDYQVAASNLEKWKNILKDKQNVEYNSYDKLNHFFI
EGEGKMTPEEYGKGNVPKYVIDDIVSWISKYSK
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

IKYDNDGKVYDFTSEAAPVESNYKLPTYVNIDNFTEKNVAIGDEKYKLPG
VLSIPKGKGPFPAVVLVHGSGANDMDETYGDTKVFKDISAGLASKGIAVL
RYNKRSNEYPSLTAIDTKLDLNKETVNDAVDAVKLLKKTKEIDSSKVFVL
GHSQGAMLTPTILKDCGNSGAAGGIMMAGPVDFLDTLLEQSKYLNSIGYM
DEDNLKYIQNLYDLVKNNKDFPKNISENTIIFHAYPYYWLSVKNSTQAQD
AVDIKNPLLILQGKRDYQVAASNLEKWKNILKDKQNVEYNSYDKLNHFFI
EGEGKMTPEEYGKGNVPKYVIDDIVSWISKYSK


Reference
    Title: Clostridium ljungdahlii represents a microbial production platform based on syngas
    Kopke M, Held C, Hujer S, Liesegang H, Wiezer A, Wollherr A, Ehrenreich A, Liebl W, Gottschalk G, Durre P
    Ref: Proc Natl Acad Sci U S A, 107:13087, 2010 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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