Gene_Locus Report

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Gene_locus Report for: idilo-q5qw13

Idiomarina loihiensis alpha/beta superfamily hydrolase

Comment
Other strains: Idiomarina loihiensis GSL 199 Alpha/beta hydrolase


Relationship
Family|NLS3-Tex30
Block| X
Position in NCBI Life Tree|Idiomarina loihiensis
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Alteromonadales: N E > Idiomarinaceae: N E > Idiomarina: N E > Idiomarina loihiensis: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : AE017340, CP005964
1 UniProt : Q5QW13
1 UniProt : Q5QW13
1 Interpro : Q5QW13
1 Prodom : Q5QW13
1 Pfam : Q5QW13
1 PIRSF : Q5QW13
1 SUPERFAM : Q5QW13
Sequence
Graphical view for this peptide sequence: idilo-q5qw13
Colored MSA for NLS3-Tex30 (raw)
MRYQQQNPEGAFRIVFLHGSGGGPDTAFMDFFAEQGIALGAELVRPDFPY
WEKVRETGKPRPPNKMQALLDAIDELLSELQQDNKPLVLMGKSLGSRVML
RLADKYGAKAVIALGFPFHPPQKPEKSRLEELEMTQAPGLILQGTRDPFS
KPLLKRAEQGQSVELPHNWQLQWLEGADHGFAATKAKAENTPKLWQQAAD
AIKEFIQ
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MRYQQQNPEGAFRIVFLHGSGGGPDTAFMDFFAEQGIALGAELVRPDFPY
WEKVRETGKPRPPNKMQALLDAIDELLSELQQDNKPLVLMGKSLGSRVML
RLADKYGAKAVIALGFPFHPPQKPEKSRLEELEMTQAPGLILQGTRDPFS
KPLLKRAEQGQSVELPHNWQLQWLEGADHGFAATKAKAENTPKLWQQAAD
AIKEFIQ


Reference
    Title: Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy
    Hou S, Saw JH, Lee KS, Freitas TA, Belisle C, Kawarabayasi Y, Donachie SP, Pikina A, Galperin MY and Alam M <12 more author(s)>
    Ref: Proc Natl Acad Sci U S A, 101:18036, 2004 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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