Gene_Locus Report

Biblio print

Add to basket

Go to basket

Tree Display

AceDB Schema

XML Display

Feedback

Gene_locus Report for: lacsa-a0a2j6jip3

Lactuca sativa (Garden lettuce). Lipase_3 domain-containing protein

Relationship
Family|Triacylglycerol-lipase-OBL1-like
Block| L
Position in NCBI Life Tree|Lactuca sativa
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > asterids: N E > campanulids: N E > Asterales: N E > Asteraceae: N E > Cichorioideae: N E > Cichorieae: N E > Lactucinae: N E > Lactuca: N E > Lactuca sativa: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : NBSK01011186
1 UniProt : A0A2J6JIP3
1 UniProt : A0A2J6JIP3
1 Interpro : A0A2J6JIP3
1 Prodom : A0A2J6JIP3
1 Pfam : A0A2J6JIP3
1 PIRSF : A0A2J6JIP3
1 SUPERFAM : A0A2J6JIP3
Sequence
Graphical view for this peptide sequence: lacsa-a0a2j6jip3
Colored MSA for Triacylglycerol-lipase-OBL1-like (raw)
MATELTTKTTCNKSFCKDYLLLSPKDVGFLDLVMLLFSEHIGNRKFIDCP
DGTVEESFGHRFVIFISILAQKILHLVDKPLGWLGSAIEFLPNFSDANGG
FFMILLNVVSGKLVLPNKESAEFLTAIGLWDIRRDLDSRIKHDDPRYTSA
LAIMAAKSAYENQAYIIETVEKHWKMEFLEYFDCWNDYEEDYTTQGFMWS
DKTGESELIGISFRGTSPFNAKDWSSDVDLSWYHLPGIGKVHAGFLKALG
LQKSLGWPKDIQTDDRKPYAYYVIRQKLKERLEKNPNAKFMVTGHSLGAA
LTIVFPAVLALHGETDLLSKLEGLYTFGQPRVGDKRFGEFMKEVLVNHGS
RYLRFVYCNDLVPRVPFDSSNLLFKHFGDCHYYNSFYKGQVLAEEPNKNY
FSILAFIPMFANALWELLRSFIIYYQNGPEYCETFTCRGWRVIGLLIAGL
PAHGPQDYVNLTRLGSPELFKLSSHEKSINDVK
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MATELTTKTTCNKSFCKDYLLLSPKDVGFLDLVMLLFSEHIGNRKFIDCP
DGTVEESFGHRFVIFISILAQKILHLVDKPLGWLGSAIEFLPNFSDANGG
FFMILLNVVSGKLVLPNKESAEFLTAIGLWDIRRDLDSRIKHDDPRYTSA
LAIMAAKSAYENQAYIIETVEKHWKMEFLEYFDCWNDYEEDYTTQGFMWS
DKTGESELIGISFRGTSPFNAKDWSSDVDLSWYHLPGIGKVHAGFLKALG
LQKSLGWPKDIQTDDRKPYAYYVIRQKLKERLEKNPNAKFMVTGHSLGAA
LTIVFPAVLALHGETDLLSKLEGLYTFGQPRVGDKRFGEFMKEVLVNHGS
RYLRFVYCNDLVPRVPFDSSNLLFKHFGDCHYYNSFYKGQVLAEEPNKNY
FSILAFIPMFANALWELLRSFIIYYQNGPEYCETFTCRGWRVIGLLIAGL
PAHGPQDYVNLTRLGSPELFKLSSHEKSINDVK


Reference
    Title: Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce
    Reyes-Chin-Wo S, Wang Z, Yang X, Kozik A, Arikit S, Song C, Xia L, Froenicke L, Lavelle DO and Michelmore RW <9 more author(s)>
    Ref: Nat Commun, 8:14953, 2017 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
webmaster

Acknowledgements and disclaimer