(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) > cellular organisms: NE > Eukaryota: NE > Viridiplantae: NE > Streptophyta: NE > Streptophytina: NE > Embryophyta: NE > Tracheophyta: NE > Euphyllophyta: NE > Spermatophyta: NE > Magnoliophyta: NE > Mesangiospermae: NE > Liliopsida: NE > Petrosaviidae: NE > commelinids: NE > Poales: NE > Poaceae: NE > PACMAD clade: NE > Panicoideae: NE > Panicodae: NE > Paniceae: NE > Panicinae: NE > Panicum: NE > Panicum miliaceum: NE
LegendThis sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA MPTDTPGPPQRAATLSDDDRLLVAHCAELSFPPSSPAPPAASAHSFQVHH ASHPYPCAAFAFAPSWSAADWAAPSSAEVDPALFPSLRAVGSGVPARANA AFLAAFRGLLDGSLLQSEVSRAVAEEKRIVFTGHSSGGSIATLAAIWFLE KCTRQGSVNQAHPFCVAFGAPLIGDNIFNHAVRREGWSQCILHFLLPLDI VPRIPLTPLASFREEIQAVLDWLSPQTPNNSPAGRSLVIPEYYETLLRST LSIASYEACSFMGCTSSILGTLTSFIDLSPYRPCGTYHFFTSSEQLIVLT NSDAVLQLLFYCLQLDTQQQLLDAAARSLSAHWQYEPIKQCMPDIVCVDY LRAISSTAPGRQTDRAAIGNIELSKEALVRLSAAAQWEKQRQINQTKIDE SCQKIQEALRSLNDYKRTCELRGVSYYDSFKLQREVHDFNANVRRLELAG LWDEIIEMLRRRELPDGFEAREEWVRLGTLFRRLVEPLDIANYYRHSKNE DTGSYLSKGRPRRYKYTQKWHEQLQRAPVGSSLESCFWAVVEELQAEMVD GRAFEDLRDRVVKLESDAHGWHSSGSLGKDVFLGSSSFVARWRTLPEQHR SASCIAKLVSL
Broomcorn millet (Panicum miliaceum L.) is the most water-efficient cereal and one of the earliest domesticated plants. Here we report its high-quality, chromosome-scale genome assembly using a combination of short-read sequencing, single-molecule real-time sequencing, Hi-C, and a high-density genetic map. Phylogenetic analyses reveal two sets of homologous chromosomes that may have merged ~5.6 million years ago, both of which exhibit strong synteny with other grass species. Broomcorn millet contains 55,930 protein-coding genes and 339 microRNA genes. We find Paniceae-specific expansion in several subfamilies of the BTB (broad complex/tramtrack/bric-a-brac) subunit of ubiquitin E3 ligases, suggesting enhanced regulation of protein dynamics may have contributed to the evolution of broomcorn millet. In addition, we identify the coexistence of all three C4 subtypes of carbon fixation candidate genes. The genome sequence is a valuable resource for breeders and will provide the foundation for studying the exceptional stress tolerance as well as C4 biology.
