Title : Periplasmic form of dipeptidyl aminopeptidase IV from Pseudoxanthomonas mexicana WO24: purification, kinetic characterization, crystallization and X-ray crystallographic analysis - Roppongi_2017_Acta.Crystallogr.F.Struct.Biol.Commun_73_601 |
Author(s) : Roppongi S , Tateoka C , Fujimoto M , Iizuka I , Morisawa S , Nakamura A , Honma N , Suzuki Y , Shida Y , Ogasawara W , Tanaka N , Sakamoto Y , Nonaka T |
Ref : Acta Crystallographica F Struct Biol Commun , 73 :601 , 2017 |
Abstract :
Dipeptidyl aminopeptidase IV (DAP IV or DPP IV) from Pseudoxanthomonas mexicana WO24 (PmDAP IV) preferentially cleaves substrate peptides with Pro or Ala at the P1 position [NH2-P2-P1(Pro/Ala)-P1'-P2'...]. For crystallographic studies, the periplasmic form of PmDAP IV was overproduced in Escherichia coli, purified and crystallized in complex with the tripeptide Lys-Pro-Tyr using the hanging-drop vapour-diffusion method. Kinetic parameters of the purified enzyme against a synthetic substrate were also determined. X-ray diffraction data to 1.90 A resolution were collected from a triclinic crystal form belonging to space group P1, with unit-cell parameters a = 88.66, b = 104.49, c = 112.84 A, alpha = 67.42, beta = 68.83, gamma = 65.46 degrees . Initial phases were determined by the molecular-replacement method using Stenotrophomonas maltophilia DPP IV (PDB entry 2ecf) as a template and refinement of the structure is in progress. |
PubMedSearch : Roppongi_2017_Acta.Crystallogr.F.Struct.Biol.Commun_73_601 |
PubMedID: 29095153 |
Gene_locus related to this paper: 9psed-q6f3i7 |
Roppongi S, Tateoka C, Fujimoto M, Iizuka I, Morisawa S, Nakamura A, Honma N, Suzuki Y, Shida Y, Ogasawara W, Tanaka N, Sakamoto Y, Nonaka T (2017)
Periplasmic form of dipeptidyl aminopeptidase IV from Pseudoxanthomonas mexicana WO24: purification, kinetic characterization, crystallization and X-ray crystallographic analysis
Acta Crystallographica F Struct Biol Commun
73 :601
Roppongi S, Tateoka C, Fujimoto M, Iizuka I, Morisawa S, Nakamura A, Honma N, Suzuki Y, Shida Y, Ogasawara W, Tanaka N, Sakamoto Y, Nonaka T (2017)
Acta Crystallographica F Struct Biol Commun
73 :601