| Title : Crystal Structure of Inhibitor-Bound Bacterial Oligopeptidase B in the Closed State: Similarity and Difference between Protozoan and Bacterial Enzymes - Petrenko_2023_Int.J.Mol.Sci_24_2286 |
| Author(s) : Petrenko DE , Karlinsky DM , Gordeeva VD , Arapidi GP , Britikova EV , Britikov VV , Nikolaeva AY , Boyko KM , Timofeev VI , Kuranova IP , Mikhailova AG , Bocharov EV , Rakitina TV |
| Ref : Int J Mol Sci , 24 : , 2023 |
| Abstract : |
| PubMedSearch : Petrenko_2023_Int.J.Mol.Sci_24_2286 |
| PubMedID: 36768612 |
| Gene_locus related to this paper: 9gamm-b3vi58 |
| Title : Elucidation of the Conformational Transition of Oligopeptidase B by an Integrative Approach Based on the Combination of X-ray, SAXS, and Essential Dynamics Sampling Simulation - Britikov_2022_Crystals_12_712 |
| Author(s) : Britikov VV , Timofeev VI , Petrenko DE , Britikova EV , Nikolaeva AY , Vlaskina AV , Boyko KM , Mikhailova AG , Rakitina TV |
| Ref : Crystals , 12 :712 , 2022 |
| Abstract : |
| PubMedSearch : Britikov_2022_Crystals_12_712 |
| PubMedID: |
| Gene_locus related to this paper: 9gamm-b3vi58 |
| Title : The Crystal Structure of Nalpha-p-tosyl-lysyl Chloromethylketone-Bound Oligopeptidase B from Serratia Proteamaculans Revealed a New Type of Inhibitor Binding. - Timofeev_2021_Crystals_11_1438 |
| Author(s) : Timofeev VI , Petrenko DE , Agapova YK , Vlaskina AV , Karlinsky DM , Mikhailova AG , Kuranova IP , Rakitina TV |
| Ref : Crystals , 11 :1438 , 2021 |
| Abstract : |
| PubMedSearch : Timofeev_2021_Crystals_11_1438 |
| PubMedID: |
| Gene_locus related to this paper: 9gamm-b3vi58 |
| Title : First Crystal Structure of Bacterial Oligopeptidase B in an Intermediate State: The Roles of the Hinge Region Modification and Spermine - Petrenko_2021_Biology.(Basel)_10_1021 |
| Author(s) : Petrenko DE , Timofeev VI , Britikov VV , Britikova EV , Kleymenov SY , Vlaskina AV , Kuranova IP , Mikhailova AG , Rakitina TV |
| Ref : Biology (Basel) , 10 : , 2021 |
| Abstract : |
| PubMedSearch : Petrenko_2021_Biology.(Basel)_10_1021 |
| PubMedID: 34681120 |
| Gene_locus related to this paper: 9gamm-b3vi58 |
| Title : Molecular dynamics complemented by site-directed mutagenesis reveals significant difference between the interdomain salt bridge networks stabilizing oligopeptidases B from bacteria and protozoa in their active conformations - Petrenko_2020_J.Biomol.Struct.Dyn_38_4868 |
| Author(s) : Petrenko DE , Mikhailova AG , Timofeev VI , Agapova Y , Karlinsky DM , Komolov AS , Korzhenevskiy DA , Vlaskina AV , Rumsh LD , Rakitina TV |
| Ref : J Biomol Struct Dyn , 38 :4868 , 2020 |
| Abstract : |
| PubMedSearch : Petrenko_2020_J.Biomol.Struct.Dyn_38_4868 |
| PubMedID: 31724904 |
| Gene_locus related to this paper: 9gamm-b3vi58 |
| Title : Crystallographic Study of Mutants and Complexes of Oligopeptidase B from Serratia proteamaculans - Petrenko_2020_Crystallogr.Rep_65_909 |
| Author(s) : Petrenko DE , Nikolaeva AY , Lazarenko VA , Dorovatovskiy PV , Timofeev VI , Vlaskina AV , Korzhenevskiy DA , Mikhailova AG , Boyko KM , Rakitina TV |
| Ref : Crystallogr Rep , 65 :909 , 2020 |
| Abstract : |
| PubMedSearch : Petrenko_2020_Crystallogr.Rep_65_909 |
| PubMedID: |
| Gene_locus related to this paper: 9gamm-b3vi58 |
| Title : Screening of Conditions that Facilitate Crystallization of Oligopeptidase B from Serratia Proteamaculans by Differential Scanning Fluorimetry - Petrenko_2020_Crystallogr.Rep_65_264 |
| Author(s) : Petrenko DE , Nikolaeva AY , Lazarenko VA , Dorovatovskii PV , Timofeev V , Vlaskina AV , Korzhenevskiy DA , Mikhailova AG , Rakitina TV |
| Ref : Crystallogr Rep , 65 :264 , 2020 |
| Abstract : |
| PubMedSearch : Petrenko_2020_Crystallogr.Rep_65_264 |
| PubMedID: |
| Gene_locus related to this paper: 9gamm-b3vi58 |
| Title : Reversible Cyclic Thermal Inactivation of Oligopeptidase B from Serratia proteamaculans - Ovchinnikova_2018_Acta.Naturae_10_65 |
| Author(s) : Ovchinnikova MV , Mikhailova AG , Karlinsky DM , Gorlenko VA , Rumsh LD |
| Ref : Acta Naturae , 10 :65 , 2018 |
| Abstract : |
| PubMedSearch : Ovchinnikova_2018_Acta.Naturae_10_65 |
| PubMedID: 30116617 |
| Gene_locus related to this paper: 9gamm-b3vi58 |
| Title : Activity modulation of the oligopeptidase B from Serratia proteamaculans by site-directed mutagenesis of amino acid residues surrounding catalytic triad histidine - Mikhailova_2017_Biochimie_139_125 |
| Author(s) : Mikhailova AG , Rakitina TV , Timofeev VI , Karlinsky DM , Korzhenevskiy DA , Agapova Ycapital Ka C , Vlaskina AV , Ovchinnikova MV , Gorlenko VA , Rumsh LD |
| Ref : Biochimie , 139 :125 , 2017 |
| Abstract : |
| PubMedSearch : Mikhailova_2017_Biochimie_139_125 |
| PubMedID: 28554571 |
| Gene_locus related to this paper: 9gamm-b3vi58 |
| Title : Truncated Variants of Serratia proteamaculans Oligopeptidase B Having Different Activities - Mikhailova_2015_Biochemistry.(Mosc)_80_1331 |
| Author(s) : Mikhailova AG , Nekrasov AN , Zinchenko AA , Rakitina TV , Korzhenevsky DA , Lipkin AV , Razguljaeva OA , Ovchinnikova MV , Gorlenko VA , Rumsh LD |
| Ref : Biochemistry (Mosc) , 80 :1331 , 2015 |
| Abstract : |
| PubMedSearch : Mikhailova_2015_Biochemistry.(Mosc)_80_1331 |
| PubMedID: 26567578 |
| Gene_locus related to this paper: 9gamm-b3vi58 |
| Title : Cloning, sequencing, expression, and characterization of thermostability of oligopeptidase B from Serratia proteamaculans, a novel psychrophilic protease - Mikhailova_2014_Protein.Expr.Purif_93_63 |
| Author(s) : Mikhailova AG , Khairullin RF , Demidyuk IV , Kostrov SV , Grinberg NV , Burova TV , Grinberg VY , Rumsh LD |
| Ref : Protein Expr Purif , 93 :63 , 2014 |
| Abstract : |
| PubMedSearch : Mikhailova_2014_Protein.Expr.Purif_93_63 |
| PubMedID: 24184401 |
| Gene_locus related to this paper: 9gamm-b3vi58 |
| Title : Oligopeptidase B from Serratia proteamaculans. III. Inhibition analysis. Specific interactions with metalloproteinase inhibitors - Mikhailova_2012_Biochemistry.(Mosc)_77_300 |
| Author(s) : Mikhailova AG , Khairullin RF , Kolomijtseva GY , Rumsh LD |
| Ref : Biochemistry (Mosc) , 77 :300 , 2012 |
| Abstract : |
| PubMedSearch : Mikhailova_2012_Biochemistry.(Mosc)_77_300 |
| PubMedID: 22803948 |
| Gene_locus related to this paper: 9gamm-b3vi58 |
| Title : Oligopeptidase B from Serratia proteamaculans. II. Enzymatic characteristics: substrate analysis, influence of calcium ions, pH and temperature dependences - Mikhailova_2011_Biochemistry.(Mosc)_76_480 |
| Author(s) : Mikhailova AG , Khairullin RF , Demidyuk IV , Gromova TY , Kostrov SV , Rumsh LD |
| Ref : Biochemistry (Mosc) , 76 :480 , 2011 |
| Abstract : |
| PubMedSearch : Mikhailova_2011_Biochemistry.(Mosc)_76_480 |
| PubMedID: 21585325 |
| Gene_locus related to this paper: 9gamm-b3vi58 |
| Title : Oligopeptidase B from Serratia proteamaculans. I. Determination of primary structure, isolation, and purification of wild-type and recombinant enzyme variants - Khairullin_2009_Biochemistry.(Mosc)_74_1164 |
| Author(s) : Khairullin RF , Mikhailova AG , Sebyakina TY , Lubenets NL , Ziganshin RH , Demidyuk IV , Gromova TY , Kostrov SV , Rumsh LD |
| Ref : Biochemistry (Mosc) , 74 :1164 , 2009 |
| Abstract : |
| PubMedSearch : Khairullin_2009_Biochemistry.(Mosc)_74_1164 |
| PubMedID: 19916930 |
| Gene_locus related to this paper: 9gamm-b3vi58 |