9gamm-b3vi58

Serratia proteamaculans Oligopeptidase B opdB

Comment

Other strains:Serratia quinivorans Serratia liquefaciens

Relationship

Family : S9N_PREPL_Peptidase_S9

Block : X

Position in NCBI Life Tree : Serratia proteamaculans

(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)

> cellular organisms N E > Bacteria N E > Proteobacteria N E > Gammaproteobacteria N E > Enterobacterales N E > Yersiniaceae N E > Serratia N E > Serratia proteamaculans N E

Sequence

Peptide

MTPPKAEKRP YPITTHGDTR VDDYYWLRDD ERTDPQVLDY LQAENAFTDA ALKPQQALRE TLYEEMVARE NLYFQSVPYV RHGYRYQTRF EPGNEYAIYV RQPQAESEHW DTLIDGNQRA EQREFYTLGG LEVSPDNQKL AVAEDFLSRR QYDIRFKNLS DDSWTDEVLE NTSGSFEWAN DSATVYYVRK HAKTLLPYQV YRHVVGTDPQ LDELIYEEQD DTFYVGLEKT TSDRFILIHL SSTTTSEILL LDADRADSTP QMFVPRRKDH EYGIDHYHQH FYIRSNKDGK NFGLYQSEQA DEAQWQTLIA PRIEVMLEGF SLFRDWLVVE ERSEGLTQLR QIHWQSGEVK RIAFDDPTYT TWLAYNPEPE TELLRYGYSS MTTPTTLYEL NLDSDERVML KQQEVKNFTP ENYRSERVWV KARDGVEVPV SLVYRHDSFA RGTNPLMVYG YGSYGSSMDP AFSASRLSLL DRGFVFVLAH IRGGGELGQL WYEDGKLFKK QNTFNDFIDV TEALIAQGYG DAKRVFAMGG AAGGLLMGAV INQAPELFNG IVAQVPFVDV VTTMLDESIP LTTGEYDEWG NPNQQAYYDY ILQYSPYDQV KAQDYPHMLV TTGLHDSQVQ YWEPAKWVAK LRELKTDDRQ LLLYTDMDSG HGGKSGRFKA YEDIALEYAF ILALAE

References (14)

Title : Crystal Structure of Inhibitor-Bound Bacterial Oligopeptidase B in the Closed State: Similarity and Difference between Protozoan and Bacterial Enzymes - Petrenko_2023_Int.J.Mol.Sci_24_2286
Author(s) : Petrenko DE , Karlinsky DM , Gordeeva VD , Arapidi GP , Britikova EV , Britikov VV , Nikolaeva AY , Boyko KM , Timofeev VI , Kuranova IP , Mikhailova AG , Bocharov EV , Rakitina TV
Ref : Int J Mol Sci , 24 : , 2023
PubMedID: 36768612
Gene_locus related to this paper: 9gamm-b3vi58

Title : Elucidation of the Conformational Transition of Oligopeptidase B by an Integrative Approach Based on the Combination of X-ray, SAXS, and Essential Dynamics Sampling Simulation - Britikov_2022_Crystals_12_712
Author(s) : Britikov VV , Timofeev VI , Petrenko DE , Britikova EV , Nikolaeva AY , Vlaskina AV , Boyko KM , Mikhailova AG , Rakitina TV
Ref : Crystals , 12 :712 , 2022
PubMedID:
Gene_locus related to this paper: 9gamm-b3vi58

Title : The Crystal Structure of Nalpha-p-tosyl-lysyl Chloromethylketone-Bound Oligopeptidase B from Serratia Proteamaculans Revealed a New Type of Inhibitor Binding. - Timofeev_2021_Crystals_11_1438
Author(s) : Timofeev VI , Petrenko DE , Agapova YK , Vlaskina AV , Karlinsky DM , Mikhailova AG , Kuranova IP , Rakitina TV
Ref : Crystals , 11 :1438 , 2021
PubMedID:
Gene_locus related to this paper: 9gamm-b3vi58

Title : First Crystal Structure of Bacterial Oligopeptidase B in an Intermediate State: The Roles of the Hinge Region Modification and Spermine - Petrenko_2021_Biology.(Basel)_10_1021
Author(s) : Petrenko DE , Timofeev VI , Britikov VV , Britikova EV , Kleymenov SY , Vlaskina AV , Kuranova IP , Mikhailova AG , Rakitina TV
Ref : Biology (Basel) , 10 : , 2021
PubMedID: 34681120
Gene_locus related to this paper: 9gamm-b3vi58

Title : Molecular dynamics complemented by site-directed mutagenesis reveals significant difference between the interdomain salt bridge networks stabilizing oligopeptidases B from bacteria and protozoa in their active conformations - Petrenko_2020_J.Biomol.Struct.Dyn_38_4868
Author(s) : Petrenko DE , Mikhailova AG , Timofeev VI , Agapova Y , Karlinsky DM , Komolov AS , Korzhenevskiy DA , Vlaskina AV , Rumsh LD , Rakitina TV
Ref : J Biomol Struct Dyn , 38 :4868 , 2020
PubMedID: 31724904
Gene_locus related to this paper: 9gamm-b3vi58

Title : Crystallographic Study of Mutants and Complexes of Oligopeptidase B from Serratia proteamaculans - Petrenko_2020_Crystallogr.Rep_65_909
Author(s) : Petrenko DE , Nikolaeva AY , Lazarenko VA , Dorovatovskiy PV , Timofeev VI , Vlaskina AV , Korzhenevskiy DA , Mikhailova AG , Boyko KM , Rakitina TV
Ref : Crystallogr Rep , 65 :909 , 2020
PubMedID:
Gene_locus related to this paper: 9gamm-b3vi58

Title : Screening of Conditions that Facilitate Crystallization of Oligopeptidase B from Serratia Proteamaculans by Differential Scanning Fluorimetry - Petrenko_2020_Crystallogr.Rep_65_264
Author(s) : Petrenko DE , Nikolaeva AY , Lazarenko VA , Dorovatovskii PV , Timofeev V , Vlaskina AV , Korzhenevskiy DA , Mikhailova AG , Rakitina TV
Ref : Crystallogr Rep , 65 :264 , 2020
PubMedID:
Gene_locus related to this paper: 9gamm-b3vi58

Title : Reversible Cyclic Thermal Inactivation of Oligopeptidase B from Serratia proteamaculans - Ovchinnikova_2018_Acta.Naturae_10_65
Author(s) : Ovchinnikova MV , Mikhailova AG , Karlinsky DM , Gorlenko VA , Rumsh LD
Ref : Acta Naturae , 10 :65 , 2018
PubMedID: 30116617
Gene_locus related to this paper: 9gamm-b3vi58

Title : Activity modulation of the oligopeptidase B from Serratia proteamaculans by site-directed mutagenesis of amino acid residues surrounding catalytic triad histidine - Mikhailova_2017_Biochimie_139_125
Author(s) : Mikhailova AG , Rakitina TV , Timofeev VI , Karlinsky DM , Korzhenevskiy DA , Agapova Ycapital Ka C , Vlaskina AV , Ovchinnikova MV , Gorlenko VA , Rumsh LD
Ref : Biochimie , 139 :125 , 2017
PubMedID: 28554571
Gene_locus related to this paper: 9gamm-b3vi58

Title : Truncated Variants of Serratia proteamaculans Oligopeptidase B Having Different Activities - Mikhailova_2015_Biochemistry.(Mosc)_80_1331
Author(s) : Mikhailova AG , Nekrasov AN , Zinchenko AA , Rakitina TV , Korzhenevsky DA , Lipkin AV , Razguljaeva OA , Ovchinnikova MV , Gorlenko VA , Rumsh LD
Ref : Biochemistry (Mosc) , 80 :1331 , 2015
PubMedID: 26567578
Gene_locus related to this paper: 9gamm-b3vi58

Title : Cloning, sequencing, expression, and characterization of thermostability of oligopeptidase B from Serratia proteamaculans, a novel psychrophilic protease - Mikhailova_2014_Protein.Expr.Purif_93_63
Author(s) : Mikhailova AG , Khairullin RF , Demidyuk IV , Kostrov SV , Grinberg NV , Burova TV , Grinberg VY , Rumsh LD
Ref : Protein Expr Purif , 93 :63 , 2014
PubMedID: 24184401
Gene_locus related to this paper: 9gamm-b3vi58

Title : Oligopeptidase B from Serratia proteamaculans. III. Inhibition analysis. Specific interactions with metalloproteinase inhibitors - Mikhailova_2012_Biochemistry.(Mosc)_77_300
Author(s) : Mikhailova AG , Khairullin RF , Kolomijtseva GY , Rumsh LD
Ref : Biochemistry (Mosc) , 77 :300 , 2012
PubMedID: 22803948
Gene_locus related to this paper: 9gamm-b3vi58

Title : Oligopeptidase B from Serratia proteamaculans. II. Enzymatic characteristics: substrate analysis, influence of calcium ions, pH and temperature dependences - Mikhailova_2011_Biochemistry.(Mosc)_76_480
Author(s) : Mikhailova AG , Khairullin RF , Demidyuk IV , Gromova TY , Kostrov SV , Rumsh LD
Ref : Biochemistry (Mosc) , 76 :480 , 2011
PubMedID: 21585325
Gene_locus related to this paper: 9gamm-b3vi58

Title : Oligopeptidase B from Serratia proteamaculans. I. Determination of primary structure, isolation, and purification of wild-type and recombinant enzyme variants - Khairullin_2009_Biochemistry.(Mosc)_74_1164
Author(s) : Khairullin RF , Mikhailova AG , Sebyakina TY , Lubenets NL , Ziganshin RH , Demidyuk IV , Gromova TY , Kostrov SV , Rumsh LD
Ref : Biochemistry (Mosc) , 74 :1164 , 2009
PubMedID: 19916930
Gene_locus related to this paper: 9gamm-b3vi58