Gene_locus Report for: cuppj-q46nh7 Ralstonia eutropha (Alcaligenes eutrophus) tannase and feruloyl esterase
Comment
other strains: Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis (strain LMG 19424)) Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Betaproteobacteria: N E > Burkholderiales: N E > Burkholderiaceae: N E > Cupriavidus: N E > Cupriavidus necator: N E 6_AlphaBeta_hydrolase :
cuppj-q46mp5 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) alpha/beta hydrolase fold ,
cuppj-q46pw1 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) alpha/beta hydrolase fold ,
cuppj-q46rf2 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) alpha/beta hydrolase fold ,
cuppj-q46t91 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) hydrolase, alpha/beta fold family ,
cuppj-q46va8 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) alpha/beta hydrolase fold ,
cuppj-q471f8 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) alpha/beta hydrolase fold ,
cuppj-q472i5 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) alpha/beta hydrolase fold ,
cuppj-q472p0 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) alpha/beta hydrolase fold ,
cuppj-q473f7 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) alpha/beta hydrolase fold ,
cuppj-q473g8 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) alpha/beta hydrolase fold:thioesterase ,
cupnh-q0k2b3 Ralstonia eutropha (Cupriavidus necator strain ATCC 17699 / H16 / DSM 428 / Stanier 337) AlphaBeta_hydrolase ,
cupnh-q0k9g4 Ralstonia eutropha Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) predicted hydrolase or acyltransferase (EC 3.-.-.-) ,
cupnh-q0k189 Ralstonia eutropha (Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) putative uncharacterized protein h16_b1447 ,
cupnh-q0k399 Ralstonia eutropha (Cupriavidus necator strain ATCC 17699 / H16 / DSM 428 / Stanier 337) AlphaBeta_hydrolase superfamily ,
cupnh-q0kbr4 Ralstonia eutropha (Cupriavidus necator strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (EC 3.1.1.-) ,
cupnh-q0kbs3 Ralstonia eutropha (Cupriavidus necator strain ATCC 17699 / H16 / DSM 428 / Stanier 337) predicted hydrolase or acyltransferase (EC 3.-.-.-) ,
cupnh-q0kcd2 Ralstonia eutropha (Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337 )) ,
cupnh-q0kci6 Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337 predicted hydrolase or acyltransferase (EC 3.-.-.-) .
A85-EsteraseD-FGH :
cuppj-q46u29 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) carboxylesterase (EC 3.1.1.1) .
ABHD13-BEM46 :
cupnh-q0jzs8 Ralstonia eutropha Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) putative uncharacterized protein h16_b1964 ,
cupnh-q0k226 Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) hydrolase of the alpha/beta superfamily .
abh_upf0017 :
cuppj-q475k8 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) alpha/beta hydrolase fold .
abh_upf00227 :
cuppj-q46xb2 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) hypothetical protein .
AcoC_BiotinLipoyl-ABH :
cuppj-q46pn7 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) alpha/beta hydrolase fold:biotin/lipoyl attachment ,
cupnh-acoc Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337 ) (fast-migrating protein) (fmp) dihydrolipoamide acetyltransferase DHLTA .
Atu1826-like :
cupnh-q0k038 Ralstonia eutropha Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) putative hydrolase alpha/beta fold .
CarbLipBact_2 :
cuppj-q46s74 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) alpha/beta hydrolase fold .
Carbon-carbon_bond_hydrolase :
cuppj-q46p99 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) alpha/beta hydrolase fold ,
cuppj-q471q3 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) alpha/beta hydrolase fold ,
cupnh-q0k3m7 Ralstonia eutropha (Cupriavidus necator strain ATCC 17699 / H16 / DSM 428 / Stanier 337) 2,6-dioxo-6-phenylhexa-3-enoate hydrolase (EC 3.7.1.8) ,
cupnh-q0k199 Ralstonia eutropha (Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)) (3.-.-.-) .
Carboxymethylbutenolide_lactonase :
alceu-catD1 Ralstonia eutropha; Ralstonia sp.; Cupriavidus necator; Cupriavidus sp., 3-oxoadipate enol-lactone hydrolase (catD1) gene (EC 3.1.1.24) ,
alceu-catD2 Ralstonia eutropha; Cupriavidus necator; Ralstonia sp.; Cupriavidus sp., 3-oxoadipate enol-lactone hydrolase (catD2) gene (EC 3.1.1.24) ,
cuppj-q46r64 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) carboxymuconolactone decarboxylase ,
cuppj-q470x6 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) alpha/beta hydrolase ,
cuppj-q477d6 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) alpha/beta hydrolase fold ,
cupnh-q0jyv4 Ralstonia eutropha (Cupriavidus necator); Ralstonia sp. Transcriptional regulator AraC familydecarboxylase (EC 4.1.1.44) ,
cupnh-q0kfc2 Ralstonia eutropha (Cupriavidus necator strain ATCC 17699 / H16 / DSM 428 / Stanier 337)AlphaBeta_hydrolase superfamily) .
Carboxypeptidase_S10 :
cuppj-q470r0 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) putative carboxypeptidase .
Cocaine_esterase :
cuppj-q470m2 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) peptidase s15 .
Dienelactone_hydrolase :
alceu-CBNC Alcaligenes eutrophus Cupriavidus necator (Ralstonia eutropha), Pseudomonas chlororaphis (P. fluorescens) Achromobacter xylosoxidans, Comamonas acidovorans, P. aeruginosa, Bordetella petrii Delftia acidovorans (Ps. acidovorans) (Comamonas acidovorans), Bordetella sp., Ps. nitroreducens, Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans) dienelactone hydrolase (EC 3.1.1.45) tfdE tcbE ,
alceu-tfe1 Alcaligenes eutrophus, Cupriavidus necator (Ralstonia eutropha) Dienelactonehydrolase (dlh I) ,
alceu-tfe2 Alcaligenes eutrophus, Cupriavidus necator (Ralstonia eutropha) Dienelactone hydrolase (dlh II) ,
cuppj-q46me8 Cupriavidus pinatubonensis (Alcaligenes eutrophus) (Ralstonia eutropha) carboxymethylenebutenolidase (EC 3.1.1.45) ,
cuppj-q46mk8 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) carboxymethylenebutenolidase (EC 3.1.1.45) ,
cuppj-q46p20 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) carboxymethylenebutenolidase (EC 3.1.1.45) ,
cuppj-q46pl2 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) carboxymethylenebutenolidase (EC 3.1.1.45) ,
cuppj-q46we3 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) carboxymethylenebutenolidase (EC 3.1.1.45) ,
cuppj-q474c9 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) twin-arginine translocation pathway signal (EC 3.1.1.45) ,
cuppj-q477h9 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) dienelactone hydrolase .
Duf_1100-S :
cuppj-q46mv6 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) acetyl xylan esterase .
Epoxide_hydrolase :
cuppj-q46s00 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) twin-arginine translocation pathway signal ,
cuppj-q471z7 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) alpha/beta hydrolase fold ,
cuppj-q472r0 Ralstonia eutropha (Cupriavidus necator, Alcaligenes eutrophus) lysophospholipase (EC 3.1.1.5) alpha/beta hydrolase fold:thioesterase ,
cupnh-q0k7y4 Ralstonia eutropha (Cupriavidus necator strain ATCC 17699 / H16 / DSM 428 / Stanier 337) Putative peptidase, S33 family .
Esterase_phb :
cuppj-q46qx3 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) esterase, phb depolymerase ,
cuppj-q46v50 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) esterase, phb depolymerase .
Haloacetate_dehalogenase :
cuppj-q476y6 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) alpha/beta hydrolase fold .
Haloperoxidase :
cuppj-q46qm9 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) alpha/beta hydrolase fold ,
cupnh-q0jzu9 Ralstonia eutropha (Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)) putative non-heme chloroperoxidase (EC 1.11.1.10) ,
cupnh-q0k1a8 Ralstonia eutropha (Cupriavidus necator ((strain ATCC 17699 / H16 / DSM 428 / Stanier 337)) non-heme haloperoxidase (EC 1.11.1.-) ,
cupnh-q0k1c5 Ralstonia eutropha (Cupriavidus necator ((strain ATCC 17699 / H16 / DSM 428 / Stanier 337)) non-heme chloroperoxidase (EC 1.11.1.10) ,
cupnh-q0k9l1 Ralstonia eutropha (Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)) non-heme haloperoxidase .
Homoserine_transacetylase :
cuppj-metx Ralstonia eutropha, Alcaligenes eutrophus, Cupriavidus necator, Cupriavidus taiwanensis, Ralstonia taiwanensis, homoserine o-acetyltransferase (EC 2.3.1.31) .
Hormone-sensitive_lipase_like :
alceu-lipas Alcaligenes eutrophus, Cupriavidus necator (Ralstonia eutropha) gene for lipase ,
cuppj-q46mt4 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) esterase/lipase/thioesterase ,
cuppj-q46na0 Cupriavidus pinatubonensis (Alcaligenes eutrophus) (Ralstonia eutropha), Geobacter sp., Dickeya dadantii, esterase/lipase/thioesterase ,
cuppj-q46px7 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) esterase/lipase/thioesterase ,
cuppj-q46t45 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) esterase/lipase/thioesterase ,
cuppj-q46vy3 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) lipolytic enzyme ,
cuppj-q471n0 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) lipolytic enzyme ,
cuppj-q471z4 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) lipolytic enzyme ,
cupnh-q0k3j4 Cupriavidus necator (Ralstonia eutropha) Esterase/lipase .
Hydrolase_RBBP9_YdeN :
cuppj-q46zd6 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) hypothetical protein ,
cuppj-q46zu8 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) hypothetical protein ,
cuppj-q471g3 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) hypothetical protein .
LYsophospholipase_carboxylesterase :
cuppj-q46s40 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) phospholipase/carboxylesterase ,
cuppj-q46t84 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) carboxylesterase (EC 3.1.1.1) ,
cuppj-q46tk7 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) phospholipase/carboxylesterase .
Monoglyceridelipase_lysophospholip :
cuppj-q46u16 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) alpha/beta hydrolase fold ,
cuppj-q46vv2 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) alpha/beta hydrolase fold .
NFM-deformylase :
cuppj-q46un9 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) alpha/beta hydrolase fold ,
cupnh-q0k320 Ralstonia eutropha (Cupriavidus necator) (strain ATCC 17699 / H16 / DSM 428 / Stanier 337), Cupriavidus sp., Ralstonia sp hydrolase ,
cupnh-q0kd51 Ralstonia eutropha (cupriavidus necator), Ralstonia sp., Cupriavidus sp. predicted hydrolase .
PGAP1 :
cuppj-q46qh0 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) hypothetical protein ,
cuppj-q473w2 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) putative lipase transmembrane protein .
PHA_depolymerase_arom :
cuppj-q46zd3 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) poly(3-hydroxyalkanoate) depolymerase .
PHA_synth_I :
alceu-phbc ,
cuppj-q472g6 Cupriavidus pinatubonensis (Alcaligenes eutrophus) (Ralstonia eutropha) poly(r)-hydroxyalkanoic acid synthase, class i .
PHA_synth_II :
cuppj-q46zd1 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) terminal .
PHB_depolymerase_PhaZ :
cuppj-q46s33 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) polyhydroxyalkanoate depolymerase ,
cuppj-q473k5 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) polyhydroxyalkanoate depolymerase .
Proline_iminopeptidase :
cuppj-q46vi4 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) peptidase s33, proline iminopeptidase 1 (EC 3.4.11.5) .
Prolyl_oligopeptidase_S9 :
cuppj-q477a5 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) conserved hypothetical signal peptide protein .
Tannase :
cuppj-q46rl3 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) feruloyl esterase (EC 3.1.1.73) ,
cuppj-q471q7 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) tannase and feruloyl esterase .
Xaa-Pro-like_dom :
cuppj-q46na4 Cupriavidus pinatubonensis (Alcaligenes eutrophus) (Ralstonia eutropha); Cupriavidus basilensis; Variovorax sp. hypothetical protein ,
cuppj-q46qt0 Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) alpha/beta hydrolase fold Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can
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(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) Ralstonia eutropha JMP134:
N ,
E .
Cupriavidus taiwanensis:
N ,
E .
Cupriavidus taiwanensis LMG 19424:
N ,
E .
Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: cuppj-q46nh7 Colored MSA for Tannase (raw)
MNHARDKAWRGVGALTVLSTLTISLAGCGGEEGAPSAAAPGPTTAQKSPT
ELCGELKGIAIPSGSIGLASMGATITSATLVAASDSGNTSGEYCKVLGGI
HPVDSAAPDIQFEIDLPTAWNGKSLHFGGGGLDGVIPDTTGFAASGFSPY
GEPIGVLAPLARGYVTYGSDAGHQAANDFVGTFASNDEALANYAGNHIKK
THDAATFLMKARYGHSASQSYFIGGSGGGRMGLVAAQKYASDYDGVIATY
PASGLLGLSFQMGRISQASLSPGGFINAAKGKVLRDAVMSQCDILDGIGD
GIISNPGACGFDAATLRCPGGADTGDTCLSDAQLNTVATIATPLTTTFDF
ANGIRTIPGYKVLAGTDFWGPLYPSLGSSAADAVADPATADVAKASFFYA
FPNALVKYAIARDASLDILTFGFTNPGALSARTQAVSQLIDGTSVNFDAF
KNKGGKLILQHGQADQFIPAQMSVDLYNRLLAAYGQSQLSSFLKFYLFPG
AAHGFGGQFEGGYDSLTALDNWVTKGVEPHDLIVTDVTPPNAGRRRPVCE
YPSWPKYVGGDPNSAASYVCTA
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
M N H A R D K A W R G V G A L T V L S T L T I S L A G C G G E E G A P S A A A P G P T T A Q K S P T E L C G E L K G I A I P S G S I G L A S M G A T I T S A T L V A A S D S G N T S G E Y C K V L G G I H P V D S A A P D I Q F E I D L P T A W N G K S L H F G G G G L D G V I P D T T G F A A S G F S P Y G E P I G V L A P L A R G Y V T Y G S D A G H Q A A N D F V G T F A S N D E A L A N Y A G N H I K K T H D A A T F L M K A R Y G H S A S Q S Y F I G G S G G G R M G L V A A Q K Y A S D Y D G V I A T Y P A S G L L G L S F Q M G R I S Q A S L S P G G F I N A A K G K V L R D A V M S Q C D I L D G I G D G I I S N P G A C G F D A A T L R C P G G A D T G D T C L S D A Q L N T V A T I A T P L T T T F D F A N G I R T I P G Y K V L A G T D F W G P L Y P S L G S S A A D A V A D P A T A D V A K A S F F Y A F P N A L V K Y A I A R D A S L D I L T F G F T N P G A L S A R T Q A V S Q L I D G T S V N F D A F K N K G G K L I L Q H G Q A D Q F I P A Q M S V D L Y N R L L A A Y G Q S Q L S S F L K F Y L F P G A A H G F G G Q F E G G Y D S L T A L D N W V T K G V E P H D L I V T D V T P P N A G R R R P V C E Y P S W P K Y V G G D P N S A A S Y V C T A
Reference
Title: Genome sequence of the beta-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobiaAmadou C , Pascal G , Mangenot S , Glew M , Bontemps C , Capela D , Carrere S , Cruveiller S , Dossat C and Masson-Boivin C <10 more author(s)> Amadou C , Pascal G , Mangenot S , Glew M , Bontemps C , Capela D , Carrere S , Cruveiller S , Dossat C , Lajus A , Marchetti M , Poinsot V , Rouy Z , Servin B , Saad M , Schenowitz C , Barbe V , Batut J , Medigue C , Masson-Boivin C (- 10) Ref: Genome Res, 18 :1472, 2008 : PubMed Abstract ESTHER: Amadou_2008_Genome.Res_18_1472 PubMedSearch: Amadou 2008 Genome.Res 18 1472 PubMedID: 18490699 Gene_locus related to this paper: cuppj-metx ,
cuppj-q46nh7 ,
cuptr-b2agb4 ,
cuptr-b2ahd0 ,
cuptr-b2ahw1 ,
cuptr-b2ai18 ,
cuptr-b2ai31 ,
cuptr-b2aii9 ,
cuptr-b2aik0 ,
cuptr-b2aiq3 ,
cuptr-b3r2j1 ,
cuptr-b3r3y6 ,
cuptr-b3r4w6 ,
cuptr-b3r7p4 ,
cuptr-b3r8d6 ,
cuptr-b3r8f5 ,
cuptr-b3r9z0 ,
cuptr-b3r255 ,
cuptr-b3r457 ,
cuptr-b3r543 ,
cuptr-b3ras4 ,
cuptr-b3rau3 ,
cuptr-b3rb04 ,
cuptr-b3rbm8 ,
cuptr-b3rd43 ,
cuptr-b3r6t6 ,
cuptr-b3r3f3 ,
cuptr-b3r2m0 Abstract
We report the first complete genome sequence of a beta-proteobacterial nitrogen-fixing symbiont of legumes, Cupriavidus taiwanensis LMG19424. The genome consists of two chromosomes of size 3.42 Mb and 2.50 Mb, and a large symbiotic plasmid of 0.56 Mb. The C. taiwanensis genome displays an unexpected high similarity with the genome of the saprophytic bacterium C. eutrophus H16, despite being 0.94 Mb smaller. Both organisms harbor two chromosomes with large regions of synteny interspersed by specific regions. In contrast, the two species host highly divergent plasmids, with the consequence that C. taiwanensis is symbiotically proficient and less metabolically versatile. Altogether, specific regions in C. taiwanensis compared with C. eutrophus cover 1.02 Mb and are enriched in genes associated with symbiosis or virulence in other bacteria. C. taiwanensis reveals characteristics of a minimal rhizobium, including the most compact (35-kb) symbiotic island (nod and nif) identified so far in any rhizobium. The atypical phylogenetic position of C. taiwanensis allowed insightful comparative genomics of all available rhizobium genomes. We did not find any gene that was both common and specific to all rhizobia, thus suggesting that a unique shared genetic strategy does not support symbiosis of rhizobia with legumes. Instead, phylodistribution analysis of more than 200 Sinorhizobium meliloti known symbiotic genes indicated large and complex variations of their occurrence in rhizobia and non-rhizobia. This led us to devise an in silico method to extract genes preferentially associated with rhizobia. We discuss how the novel genes we have identified may contribute to symbiotic adaptation.
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