| Title : Comparative genomic analysis provides insights into the evolution and niche adaptation of marine Magnetospira sp. QH-2 strain - Ji_2014_Environ.Microbiol_16_525 |
| Author(s) : Ji B , Zhang SD , Arnoux P , Rouy Z , Alberto F , Philippe N , Murat D , Zhang WJ , Rioux JB , Ginet N , Sabaty M , Mangenot S , Pradel N , Tian J , Yang J , Zhang L , Zhang W , Pan H , Henrissat B , Coutinho PM , Li Y , Xiao T , Medigue C , Barbe V , Pignol D , Talla E , Wu LF |
| Ref : Environ Microbiol , 16 :525 , 2014 |
| PubMedID: 23841906 |
| Gene_locus related to this paper: 9prot-w6k5m7 , 9prot-w6khf2 , 9prot-w6kbu9 |
| Title : Structural and functional partitioning of bread wheat chromosome 3B - Choulet_2014_Science_345_1249721 |
| Author(s) : Choulet F , Alberti A , Theil S , Glover N , Barbe V , Daron J , Pingault L , Sourdille P , Couloux A , Paux E , Leroy P , Mangenot S , Guilhot N , Le Gouis J , Balfourier F , Alaux M , Jamilloux V , Poulain J , Durand C , Bellec A , Gaspin C , Safar J , Dolezel J , Rogers J , Vandepoele K , Aury JM , Mayer K , Berges H , Quesneville H , Wincker P , Feuillet C |
| Ref : Science , 345 :1249721 , 2014 |
| PubMedID: 25035497 |
| Gene_locus related to this paper: wheat-a0a080yuw6 , wheat-w5d1z6 , wheat-a0a077rex4 , wheat-a0a077s1q2 |
| Title : Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis - Supply_2013_Nat.Genet_45_172 |
| Author(s) : Supply P , Marceau M , Mangenot S , Roche D , Rouanet C , Khanna V , Majlessi L , Criscuolo A , Tap J , Pawlik A , Fiette L , Orgeur M , Fabre M , Parmentier C , Frigui W , Simeone R , Boritsch EC , Debrie AS , Willery E , Walker D , Quail MA , Ma L , Bouchier C , Salvignol G , Sayes F , Cascioferro A , Seemann T , Barbe V , Locht C , Gutierrez MC , Leclerc C , Bentley SD , Stinear TP , Brisse S , Medigue C , Parkhill J , Cruveiller S , Brosch R |
| Ref : Nat Genet , 45 :172 , 2013 |
| PubMedID: 23291586 |
| Gene_locus related to this paper: mycmm-b2ht49 , myctu-cut3 , myctu-cutas1 , myctu-cutas2 , myctu-Rv1069c , myctu-RV1215C , myctu-RV1758 , myctu-Rv2045c , myctu-RV3452 , myctu-RV3724 , myctu-Rv3802c |
| Title : Comparative genomics of pathogenic lineages of Vibrio nigripulchritudo identifies virulence-associated traits - Goudenege_2013_ISME.J_7_1985 |
| Author(s) : Goudenege D , Labreuche Y , Krin E , Ansquer D , Mangenot S , Calteau A , Medigue C , Mazel D , Polz MF , Le Roux F |
| Ref : Isme J , 7 :1985 , 2013 |
| PubMedID: 23739050 |
| Gene_locus related to this paper: 9vibr-f9tu24 , 9vibr-u4ij97 , 9vibr-u4g9i9 , 9vibr-f9tk00 |
| Title : Genome sequence of the haloalkaliphilic methanotrophic bacterium Methylomicrobium alcaliphilum 20Z - Vuilleumier_2012_J.Bacteriol_194_551 |
| Author(s) : Vuilleumier S , Khmelenina VN , Bringel F , Reshetnikov AS , Lajus A , Mangenot S , Rouy Z , Op den Camp HJ , Jetten MS , DiSpirito AA , Dunfield P , Klotz MG , Semrau JD , Stein LY , Barbe V , Medigue C , Trotsenko YA , Kalyuzhnaya MG |
| Ref : Journal of Bacteriology , 194 :551 , 2012 |
| PubMedID: 22207753 |
| Title : Genome sequence of the marine bacterium Marinobacter hydrocarbonoclasticus SP17, which forms biofilms on hydrophobic organic compounds - Grimaud_2012_J.Bacteriol_194_3539 |
| Author(s) : Grimaud R , Ghiglione JF , Cagnon C , Lauga B , Vaysse PJ , Rodriguez-Blanco A , Mangenot S , Cruveiller S , Barbe V , Duran R , Wu LF , Talla E , Bonin P , Michotey V |
| Ref : Journal of Bacteriology , 194 :3539 , 2012 |
| PubMedID: 22689231 |
| Gene_locus related to this paper: marav-a1u338 , marhy-h8w622 , marhy-h8w685 , marav-a1u1j6 |
| Title : Genome sequence of the human- and animal-pathogenic strain Nocardia cyriacigeorgica GUH-2 - Zoropogui_2012_J.Bacteriol_194_2098 |
| Author(s) : Zoropogui A , Pujic P , Normand P , Barbe V , Beaman B , Beaman L , Boiron P , Colinon C , Deredjian A , Graindorge A , Mangenot S , Nazaret S , Neto M , Petit S , Roche D , Vallenet D , Rodriguez-Nava V , Richard Y , Cournoyer B , Blaha D |
| Ref : Journal of Bacteriology , 194 :2098 , 2012 |
| PubMedID: 22461543 |
| Gene_locus related to this paper: noccg-h6r1f5 , noccg-h6r6y9 , noccg-h6r479 , noccg-h6rch6 , noccg-h6r8b1 , noccg-h6r6b6 , noccg-h6r249 , noccg-h6r9n3 , noccg-h6r4q8 , noccg-h6rbg1 , noccg-h6r7g5 , noccg-h6r481 , noccg-h6r0w3 , noccg-h6r3f1 |
| Title : Complete genome sequence of Streptomyces cattleya NRRL 8057, a producer of antibiotics and fluorometabolites - Barbe_2011_J.Bacteriol_193_5055 |
| Author(s) : Barbe V , Bouzon M , Mangenot S , Badet B , Poulain J , Segurens B , Vallenet D , Marliere P , Weissenbach J |
| Ref : Journal of Bacteriology , 193 :5055 , 2011 |
| PubMedID: 21868806 |
| Gene_locus related to this paper: stren-f8jjf8 , stren-f8jk65 , stren-f8jly2 , stren-f8jm04 , stren-f8juv4 , stren-f8k466 , stren-f8jvj2 , stren-f8k4s8 |
| Title : Azospirillum genomes reveal transition of bacteria from aquatic to terrestrial environments - Wisniewski-Dye_2011_PLoS.Genet_7_e1002430 |
| Author(s) : Wisniewski-Dye F , Borziak K , Khalsa-Moyers G , Alexandre G , Sukharnikov LO , Wuichet K , Hurst GB , McDonald WH , Robertson JS , Barbe V , Calteau A , Rouy Z , Mangenot S , Prigent-Combaret C , Normand P , Boyer M , Siguier P , Dessaux Y , Elmerich C , Condemine G , Krishnen G , Kennedy I , Paterson AH , Gonzalez V , Mavingui P , Zhulin IB |
| Ref : PLoS Genet , 7 :e1002430 , 2011 |
| PubMedID: 22216014 |
| Gene_locus related to this paper: azobr-g8al65 , azol4-g7zc95 , azol4-g7zc98 , azol4-g7zfp9 , azol4-g7zcr5 , azobr-g8b0i6 |
| Title : Ralstonia syzygii, the Blood Disease Bacterium and some Asian R. solanacearum strains form a single genomic species despite divergent lifestyles - Remenant_2011_PLoS.One_6_e24356 |
| Author(s) : Remenant B , de Cambiaire JC , Cellier G , Jacobs JM , Mangenot S , Barbe V , Lajus A , Vallenet D , Medigue C , Fegan M , Allen C , Prior P |
| Ref : PLoS ONE , 6 :e24356 , 2011 |
| PubMedID: 21931687 |
| Gene_locus related to this paper: 9rals-g2zrs4 , 9rals-g3a1g4 , ralsl-a0a072zy50 , 9rals-g3a7g7 |
| Title : Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence - Remenant_2010_BMC.Genomics_11_379 |
| Author(s) : Remenant B , Coupat-Goutaland B , Guidot A , Cellier G , Wicker E , Allen C , Fegan M , Pruvost O , Elbaz M , Calteau A , Salvignol G , Mornico D , Mangenot S , Barbe V , Medigue C , Prior P |
| Ref : BMC Genomics , 11 :379 , 2010 |
| PubMedID: 20550686 |
| Gene_locus related to this paper: ralsl-d8p4i2 , ralso-d8njk6 , ralso-PCAD , ralso-PCAD2 , ralso-PHAZ , ralso-PHBC , ralso-RSC0439 , ralso-RSC0563 , ralso-RSC0604 , ralso-RSC1003 , ralso-RSC1344 , ralso-RSC1772 , ralso-RSC1804 , ralso-RSC1811 , ralso-RSC1887 , ralso-RSC2149 , ralso-RSC2228 , ralso-RSC2781 , ralso-RSC3346 , ralso-RSP0196 , ralso-RSP0795 , ralso-RSP1108 , ralso-RSP1248 , ralso-RSP1521 , ralsl-d8ny30 , ralsl-y0kx85 , ralsl-a0a072zy50 |
| Title : Comparative genomic and proteomic analyses of two Mycoplasma agalactiae strains: clues to the macro- and micro-events that are shaping mycoplasma diversity - Nouvel_2010_BMC.Genomics_11_86 |
| Author(s) : Nouvel LX , Sirand-Pugnet P , Marenda MS , Sagne E , Barbe V , Mangenot S , Schenowitz C , Jacob D , Barre A , Claverol S , Blanchard A , Citti C |
| Ref : BMC Genomics , 11 :86 , 2010 |
| PubMedID: 20122262 |
| Gene_locus related to this paper: myca6-d3vqz4 , mycap-a5ixe1 , mycap-a5ixe2 , mycap-a5ixk0 , mycap-a5ixt9 , mycap-a5iy19 , mycap-a5iza3 , mycap-a5ixl0 |
| Title : Nitrite-driven anaerobic methane oxidation by oxygenic bacteria - Ettwig_2010_Nature_464_543 |
| Author(s) : Ettwig KF , Butler MK , Le Paslier D , Pelletier E , Mangenot S , Kuypers MM , Schreiber F , Dutilh BE , Zedelius J , de Beer D , Gloerich J , Wessels HJ , van Alen T , Luesken F , Wu ML , van de Pas-Schoonen KT , Op den Camp HJ , Janssen-Megens EM , Francoijs KJ , Stunnenberg H , Weissenbach J , Jetten MS , Strous M |
| Ref : Nature , 464 :543 , 2010 |
| PubMedID: 20336137 |
| Gene_locus related to this paper: 9bact-d5mm47 |
| Title : The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae - Pieretti_2009_BMC.Genomics_10_616 |
| Author(s) : Pieretti I , Royer M , Barbe V , Carrere S , Koebnik R , Cociancich S , Couloux A , Darrasse A , Gouzy J , Jacques MA , Lauber E , Manceau C , Mangenot S , Poussier S , Segurens B , Szurek B , Verdier V , Arlat M , Rott P |
| Ref : BMC Genomics , 10 :616 , 2009 |
| PubMedID: 20017926 |
| Gene_locus related to this paper: xanal-q53b17 , xanap-d2u924 , xanap-d2uar7 , xanap-d2ub15 , xanap-d2ucz4 , xanap-d2ue41 , xanap-d2ue72 , xanap-d2ueb5 , xanap-d2uf40 , xanap-d2ugg6 , xanap-d2ugj3 , xanap-d2ugr3 , xanap-d2ugv1 , xanap-d2ubh2 , xanap-d2ud71 , xanap-d2u9n1 , xanap-d2uci9 |
| Title : Genome sequence of the beta-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia - Amadou_2008_Genome.Res_18_1472 |
| Author(s) : Amadou C , Pascal G , Mangenot S , Glew M , Bontemps C , Capela D , Carrere S , Cruveiller S , Dossat C , Lajus A , Marchetti M , Poinsot V , Rouy Z , Servin B , Saad M , Schenowitz C , Barbe V , Batut J , Medigue C , Masson-Boivin C |
| Ref : Genome Res , 18 :1472 , 2008 |
| PubMedID: 18490699 |
| Gene_locus related to this paper: cuppj-metx , cuppj-q46nh7 , cuptr-b2agb4 , cuptr-b2ahd0 , cuptr-b2ahw1 , cuptr-b2ai18 , cuptr-b2ai31 , cuptr-b2aii9 , cuptr-b2aik0 , cuptr-b2aiq3 , cuptr-b3r2j1 , cuptr-b3r3y6 , cuptr-b3r4w6 , cuptr-b3r7p4 , cuptr-b3r8d6 , cuptr-b3r8f5 , cuptr-b3r9z0 , cuptr-b3r255 , cuptr-b3r457 , cuptr-b3r543 , cuptr-b3ras4 , cuptr-b3rau3 , cuptr-b3rb04 , cuptr-b3rbm8 , cuptr-b3rd43 , cuptr-b3r6t6 , cuptr-b3r3f3 , cuptr-b3r2m0 |
| Title : Comparative analysis of Acinetobacters: three genomes for three lifestyles - Vallenet_2008_PLoS.One_3_e1805 |
| Author(s) : Vallenet D , Nordmann P , Barbe V , Poirel L , Mangenot S , Bataille E , Dossat C , Gas S , Kreimeyer A , Lenoble P , Oztas S , Poulain J , Segurens B , Robert C , Abergel C , Claverie JM , Raoult D , Medigue C , Weissenbach J , Cruveiller S |
| Ref : PLoS ONE , 3 :e1805 , 2008 |
| PubMedID: 18350144 |
| Gene_locus related to this paper: acib1-e8pgf8 , acib3-b7guy6 , acib3-b7h156 , acib3-metx , aciba-d0c992 , aciba-k1epl1 , aciba-k6lkl9 , acibc-b2huf4 , acibc-b2i0a2 , acibc-b2i0w9 , acibc-b2i2b0 , acibs-b0vt32 , acibt-a3m1g6 , acibt-a3m5r6 , acibt-a3m5t3 , acibt-a3m5x2 , acibt-a3m627 , acibt-a3m707 , aciby-b0v723 , acica-d0s0a7 , aciju-d0sj67 , aciba-f5iht4 , aciba-a0a009wzt4 |
| Title : A tale of two oxidation states: bacterial colonization of arsenic-rich environments - Muller_2007_PLoS.Genet_3_e53 |
| Author(s) : Muller D , Medigue C , Koechler S , Barbe V , Barakat M , Talla E , Bonnefoy V , Krin E , Arsene-Ploetze F , Carapito C , Chandler M , Cournoyer B , Cruveiller S , Dossat C , Duval S , Heymann M , Leize E , Lieutaud A , Lievremont D , Makita Y , Mangenot S , Nitschke W , Ortet P , Perdrial N , Schoepp B , Siguier P , Simeonova DD , Rouy Z , Segurens B , Turlin E , Vallenet D , Van Dorsselaer A , Weiss S , Weissenbach J , Lett MC , Danchin A , Bertin PN |
| Ref : PLoS Genet , 3 :e53 , 2007 |
| PubMedID: 17432936 |
| Gene_locus related to this paper: herar-a4g4w8 , herar-a4g5p0 , herar-a4g6p3 , herar-a4g378 , herar-a4g411 , herar-a4g622 , herar-a4g818 , herar-a4g899 , herar-a4gac3 , herar-metx , herar-a4g8n7 |
| Title : Being pathogenic, plastic, and sexual while living with a nearly minimal bacterial genome - Sirand-Pugnet_2007_PLoS.Genet_3_e75 |
| Author(s) : Sirand-Pugnet P , Lartigue C , Marenda M , Jacob D , Barre A , Barbe V , Schenowitz C , Mangenot S , Couloux A , Segurens B , de Daruvar A , Blanchard A , Citti C |
| Ref : PLoS Genet , 3 :e75 , 2007 |
| PubMedID: 17511520 |
| Gene_locus related to this paper: mycap-a5ixe1 , mycap-a5ixe2 , mycap-a5ixk0 , mycap-a5ixt9 , mycap-a5iy19 , mycap-a5iza3 , mycap-a5ixl0 |
| Title : Evolution of the terminal regions of the Streptomyces linear chromosome - Choulet_2006_Mol.Biol.Evol_23_2361 |
| Author(s) : Choulet F , Aigle B , Gallois A , Mangenot S , Gerbaud C , Truong C , Francou FX , Fourrier C , Guerineau M , Decaris B , Barbe V , Pernodet JL , Leblond P |
| Ref : Molecular Biology Evolution , 23 :2361 , 2006 |
| PubMedID: 16956972 |
| Gene_locus related to this paper: stram-a0abw5 , stram-a0ac15 , stram-a0ac26 , stram-a0ac27 , stram-a0acp3 , stram-a0acq4 , stram-a0acx2.1 , stram-a0acx2.2 , stram-a0adx4 , stram-a0aeb0 , stram-a3ki49 , stram-a3ki77 , stram-a3ki84 , stram-a3ki91 , stram-a3kik7 , stram-a3kj27 , stram-a3kkf9 , stram-a3kkk4 , stram-a3kkk5 , stram-q1rrf2 , strco-SCF11.06 , strco-SCO7057 , stram-a0acr7 |
| Title : Intraspecific variability of the terminal inverted repeats of the linear chromosome of Streptomyces ambofaciens - Choulet_2006_J.Bacteriol_188_6599 |
| Author(s) : Choulet F , Gallois A , Aigle B , Mangenot S , Gerbaud C , Truong C , Francou FX , Borges F , Fourrier C , Guerineau M , Decaris B , Barbe V , Pernodet JL , Leblond P |
| Ref : Journal of Bacteriology , 188 :6599 , 2006 |
| PubMedID: 16952952 |
| Gene_locus related to this paper: stram-q0jwm8 , stram-q1rql3 , stram-q1rqp7 , stram-q1rqu8 , stram-q1rqw8 , stram-q1rr14 , stram-q1rr40 , stram-q1rr62 , stram-q1rrc9 , stram-q1rrf2 , stram-Q9KWX3 |
| Title : Deciphering the evolution and metabolism of an anammox bacterium from a community genome - Strous_2006_Nature_440_790 |
| Author(s) : Strous M , Pelletier E , Mangenot S , Rattei T , Lehner A , Taylor MW , Horn M , Daims H , Bartol-Mavel D , Wincker P , Barbe V , Fonknechten N , Vallenet D , Segurens B , Schenowitz-Truong C , Medigue C , Collingro A , Snel B , Dutilh BE , Op den Camp HJ , van der Drift C , Cirpus I , van de Pas-Schoonen KT , Harhangi HR , van Niftrik L , Schmid M , Keltjens J , van de Vossenberg J , Kartal B , Meier H , Frishman D , Huynen MA , Mewes HW , Weissenbach J , Jetten MS , Wagner M , Le Paslier D |
| Ref : Nature , 440 :790 , 2006 |
| PubMedID: 16598256 |
| Gene_locus related to this paper: 9bact-q1py93 , 9bact-q1q3k9 , 9bact-q1q414 |
| Title : The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution - van de Guchte_2006_Proc.Natl.Acad.Sci.U.S.A_103_9274 |
| Author(s) : van de Guchte M , Penaud S , Grimaldi C , Barbe V , Bryson K , Nicolas P , Robert C , Oztas S , Mangenot S , Couloux A , Loux V , Dervyn R , Bossy R , Bolotin A , Batto JM , Walunas T , Gibrat JF , Bessieres P , Weissenbach J , Ehrlich SD , Maguin E |
| Ref : Proc Natl Acad Sci U S A , 103 :9274 , 2006 |
| PubMedID: 16754859 |
| Gene_locus related to this paper: lacda-q1g8l1 , lacdb-q04ci8 , lacdb-q04cw3 , lacdl-pepx , lacdl-pip |
| Title : Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125 - Medigue_2005_Genome.Res_15_1325 |
| Author(s) : Medigue C , Krin E , Pascal G , Barbe V , Bernsel A , Bertin PN , Cheung F , Cruveiller S , D'Amico S , Duilio A , Fang G , Feller G , Ho C , Mangenot S , Marino G , Nilsson J , Parrilli E , Rocha EP , Rouy Z , Sekowska A , Tutino ML , Vallenet D , von Heijne G , Danchin A |
| Ref : Genome Res , 15 :1325 , 2005 |
| PubMedID: 16169927 |
| Gene_locus related to this paper: pseht-q3icg6 , pseht-q3icm3 , pseht-q3icu1 , pseht-q3id97 , pseht-q3ida0 , pseht-q3idf4 , pseht-q3ie89 , pseht-q3ieu0 , pseht-q3iev9 , pseht-q3if93 , pseht-q3ifd8 , pseht-q3ife2 , pseht-q3ig70 , pseht-q3igp2 , pseht-q3igv0 , pseht-q3ihr6 , pseht-q3ii38 , pseht-q3iid7 , pseht-q3iip2 , pseht-q3iir1 , pseht-q3iis4 , pseht-q3ijn3 , pseht-q3ijt3 , pseht-q3ijy1 , pseht-q3ijy8 , pseht-q3ik03 , pseht-q3ikv5 , pseht-q3il66 , pseht-q3ik88 |