Gene_locus Report for: sphww-a5ve07 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) Alpha/beta hydrolase fold
Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Alphaproteobacteria: N E > Sphingomonadales: N E > Sphingomonadaceae: N E > Sphingomonas: N E > Sphingomonas wittichii: N E 6_AlphaBeta_hydrolase :
sphww-a5v4n7 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) Alpha/beta hydrolase fold ,
sphww-a5v4r1 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) Alpha/beta hydrolase fold ,
sphww-a5v5p4 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) Alpha/beta hydrolase fold ,
sphww-a5v6j3 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) Alpha/beta hydrolase fold ,
sphww-a5v6l9 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) Alpha/beta hydrolase fold ,
sphww-a5v6v0 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) Alpha/beta hydrolase fold ,
sphww-a5ve59 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) Alpha/beta hydrolase fold ,
sphww-a5ve60 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) Alpha/beta hydrolase fold ,
sphww-a5vgi4 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) Putative uncharacterized protein .
A85-EsteraseD-FGH :
sphww-a5v5h7 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) S-formylglutathione hydrolase .
A85-IroE-IroD-Fes-Yiel :
sphww-a5ve31 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) Putative esterase .
Bacterial_esterase :
sphww-a5v7g3 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) Putative uncharacterized protein .
Carbon-carbon_bond_hydrolase :
sphww-a5j2a5 ,
sphww-a5v7c2 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) Alpha/beta hydrolase fold ,
sphww-a5v750 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) Alpha/beta hydrolase fold ,
sphww-a5vbl8 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) Alpha/beta hydrolase fold .
Carboxymethylbutenolide_lactonase :
sphww-a5v4x9 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) 3-oxoadipate enol-lactonase ,
sphww-a5v570 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) 4-carboxymuconolactone decarboxylase / 3-oxoadipate enol-lactonase ,
sphww-a5vh68 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) 3-oxoadipate enol-lactonase .
Carboxypeptidase_S10 :
sphww-a5vcv2 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) Peptidase S10, serine carboxypeptidase .
Carb_B_Bacteria :
sphww-a5v5e8 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) carboxylesterase, type b ,
sphww-a5v5h0 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) carboxylesterase, type b ,
sphww-a5v6r6 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) carboxylesterase, type b ,
sphww-a5ve47 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) carboxylesterase, type b precursor ,
sphww-a5ve90 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) carboxylesterase, type b .
Duf_3089 :
sphww-a5v3v2 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) Putative uncharacterized protein .
Epoxide_hydrolase :
sphww-a5v693 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) Alpha/beta hydrolase fold ,
sphww-a5v737 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) Alpha/beta hydrolase fold ,
sphww-a5vbi9 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) Alpha/beta hydrolase fold ,
sphww-a5vbj1 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) Alpha/beta hydrolase fold ,
sphww-a5ve39 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) Alpha/beta hydrolase fold ,
sphww-a5ve53 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) Alpha/beta hydrolase fold .
Est-OsmC :
sphww-a5v4y0 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) esterase found in n-term of an OsmC/Ohr family domain .
HNLyase_Bact :
sphww-a5v7k1 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) Putative uncharacterized protein ,
sphww-a5v509 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) Alpha/beta hydrolase fold .
Proline_iminopeptidase :
sphww-a5v4t8 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273). Prolyl aminopeptidase ,
sphww-a5ven2 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273). Proline iminopeptidase .
VirJ :
sphww-a5vfs1 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273). Virulence factor family protein ,
sphww-a5vfs2 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273). Type IV secretory pathway VirJ component-like protein ,
sphww-a5vgg0 Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273). Type IV secretory pathway VirJ component-like protein Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: sphww-a5ve07 Colored MSA for Carbon-carbon_bond_hydrolase (raw)
MANGPQSHFADVDGVKYHYHDIGTGEPLILIHGGGPGASGWSNYSRNVEA
LSRQFRLIIPDLVGYGQSDKPVLEGPRFGIYAKGMLGLMSRIGIEKAHVV
GNSLGGGTAIKMALEAPDRIGRLILMGPAGLLAPSTPMPTLGVRQIMEFY
GGEGPTREKLRAFLQTMVYDSSFLTEELLDGRIAAATQPDLLANPPLGRG
GPPPIEALWKENLAGITHDTLILWGREDRVNPMDMHLTLLAQLPNAQFTV
FTRCGHWVQWEKAKAFNALVASFVRGEMS
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
M A N G P Q S H F A D V D G V K Y H Y H D I G T G E P L I L I H G G G P G A S G W S N Y S R N V E A L S R Q F R L I I P D L V G Y G Q S D K P V L E G P R F G I Y A K G M L G L M S R I G I E K A H V V G N S L G G G T A I K M A L E A P D R I G R L I L M G P A G L L A P S T P M P T L G V R Q I M E F Y G G E G P T R E K L R A F L Q T M V Y D S S F L T E E L L D G R I A A A T Q P D L L A N P P L G R G G P P P I E A L W K E N L A G I T H D T L I L W G R E D R V N P M D M H L T L L A Q L P N A Q F T V F T R C G H W V Q W E K A K A F N A L V A S F V R G E M S
Reference
Title: Genome sequence of the dioxin-mineralizing bacterium Sphingomonas wittichii RW1Miller TR , Delcher AL , Salzberg SL , Saunders E , Detter JC , Halden RU Ref: Journal of Bacteriology, 192 :6101, 2010 : PubMed Abstract ESTHER: Miller_2010_J.Bacteriol_192_6101 PubMedSearch: Miller 2010 J.Bacteriol 192 6101 PubMedID: 20833805 Gene_locus related to this paper: 9sphn-a0a0f5pa67 ,
sphww-a5ve07 Abstract
Pollutants such as polychlorinated biphenyls and dioxins pose a serious threat to human and environmental health. Natural attenuation of these compounds by microorganisms provides one promising avenue for their removal from contaminated areas. Over the past 2 decades, studies of the bacterium Sphingomonas wittichii RW1 have provided a wealth of knowledge about how bacteria metabolize chlorinated aromatic hydrocarbons. Here we describe the finished genome sequence of S. wittichii RW1 and major findings from its annotation.
Other Papers
Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) Meta-cleavage pathway hydrolase protein