| Title : The coffee genome provides insight into the convergent evolution of caffeine biosynthesis - Denoeud_2014_Science_345_1181 |
| Author(s) : Denoeud F , Carretero-Paulet L , Dereeper A , Droc G , Guyot R , Pietrella M , Zheng C , Alberti A , Anthony F , Aprea G , Aury JM , Bento P , Bernard M , Bocs S , Campa C , Cenci A , Combes MC , Crouzillat D , Da Silva C , Daddiego L , De Bellis F , Dussert S , Garsmeur O , Gayraud T , Guignon V , Jahn K , Jamilloux V , Joet T , Labadie K , Lan T , Leclercq J , Lepelley M , Leroy T , Li LT , Librado P , Lopez L , Munoz A , Noel B , Pallavicini A , Perrotta G , Poncet V , Pot D , Priyono , Rigoreau M , Rouard M , Rozas J , Tranchant-Dubreuil C , VanBuren R , Zhang Q , Andrade AC , Argout X , Bertrand B , de Kochko A , Graziosi G , Henry RJ , Jayarama , Ming R , Nagai C , Rounsley S , Sankoff D , Giuliano G , Albert VA , Wincker P , Lashermes P |
| Ref : Science , 345 :1181 , 2014 |
|
Abstract :
Coffee is a valuable beverage crop due to its characteristic flavor, aroma, and the stimulating effects of caffeine. We generated a high-quality draft genome of the species Coffea canephora, which displays a conserved chromosomal gene order among asterid angiosperms. Although it shows no sign of the whole-genome triplication identified in Solanaceae species such as tomato, the genome includes several species-specific gene family expansions, among them N-methyltransferases (NMTs) involved in caffeine production, defense-related genes, and alkaloid and flavonoid enzymes involved in secondary compound synthesis. Comparative analyses of caffeine NMTs demonstrate that these genes expanded through sequential tandem duplications independently of genes from cacao and tea, suggesting that caffeine in eudicots is of polyphyletic origin. |
| PubMedSearch : Denoeud_2014_Science_345_1181 |
| PubMedID: 25190796 |
| Gene_locus related to this paper: cofca-a0a068vi93 , cofca-a0a068uy77 , cofca-a0a068tzh7 , cofca-a0a068tuj7 , cofca-a0a068v983 , cofca-a0a068tnj0 , cofca-a0a068tyf7 , cofca-a0a068u1v4.1 , cofca-a0a068vks5 , cofar-a0a6p6xcv5 |
Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, Zheng C, Alberti A, Anthony F, Aprea G, Aury JM, Bento P, Bernard M, Bocs S, Campa C, Cenci A, Combes MC, Crouzillat D, Da Silva C, Daddiego L, De Bellis F, Dussert S, Garsmeur O, Gayraud T, Guignon V, Jahn K, Jamilloux V, Joet T, Labadie K, Lan T, Leclercq J, Lepelley M, Leroy T, Li LT, Librado P, Lopez L, Munoz A, Noel B, Pallavicini A, Perrotta G, Poncet V, Pot D, Priyono, Rigoreau M, Rouard M, Rozas J, Tranchant-Dubreuil C, VanBuren R, Zhang Q, Andrade AC, Argout X, Bertrand B, de Kochko A, Graziosi G, Henry RJ, Jayarama, Ming R, Nagai C, Rounsley S, Sankoff D, Giuliano G, Albert VA, Wincker P, Lashermes P (2014)
The coffee genome provides insight into the convergent evolution of caffeine biosynthesis
Science
345 :1181
Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, Zheng C, Alberti A, Anthony F, Aprea G, Aury JM, Bento P, Bernard M, Bocs S, Campa C, Cenci A, Combes MC, Crouzillat D, Da Silva C, Daddiego L, De Bellis F, Dussert S, Garsmeur O, Gayraud T, Guignon V, Jahn K, Jamilloux V, Joet T, Labadie K, Lan T, Leclercq J, Lepelley M, Leroy T, Li LT, Librado P, Lopez L, Munoz A, Noel B, Pallavicini A, Perrotta G, Poncet V, Pot D, Priyono, Rigoreau M, Rouard M, Rozas J, Tranchant-Dubreuil C, VanBuren R, Zhang Q, Andrade AC, Argout X, Bertrand B, de Kochko A, Graziosi G, Henry RJ, Jayarama, Ming R, Nagai C, Rounsley S, Sankoff D, Giuliano G, Albert VA, Wincker P, Lashermes P (2014)
Science
345 :1181