Erickson_2022_Nat.Commun_13_7850

Reference

Title : Sourcing thermotolerant poly(ethylene terephthalate) hydrolase scaffolds from natural diversity - Erickson_2022_Nat.Commun_13_7850
Author(s) : Erickson E , Gado JE , Avilan L , Bratti F , Brizendine RK , Cox PA , Gill R , Graham R , Kim DJ , Konig G , Michener WE , Poudel S , Ramirez KJ , Shakespeare TJ , Zahn M , Boyd ES , Payne CM , Dubois JL , Pickford AR , Beckham GT , McGeehan JE
Ref : Nat Commun , 13 :7850 , 2022
Abstract :

Enzymatic deconstruction of poly(ethylene terephthalate) (PET) is under intense investigation, given the ability of hydrolase enzymes to depolymerize PET to its constituent monomers near the polymer glass transition temperature. To date, reported PET hydrolases have been sourced from a relatively narrow sequence space. Here, we identify additional PET-active biocatalysts from natural diversity by using bioinformatics and machine learning to mine 74 putative thermotolerant PET hydrolases. We successfully express, purify, and assay 51 enzymes from seven distinct phylogenetic groups; observing PET hydrolysis activity on amorphous PET film from 37 enzymes in reactions spanning pH from 4.5-9.0 and temperatures from 30-70 degreesC. We conduct PET hydrolysis time-course reactions with the best-performing enzymes, where we observe differences in substrate selectivity as function of PET morphology. We employed X-ray crystallography and AlphaFold to examine the enzyme architectures of all 74 candidates, revealing protein folds and accessory domains not previously associated with PET deconstruction. Overall, this study expands the number and diversity of thermotolerant scaffolds for enzymatic PET deconstruction.

PubMedSearch : Erickson_2022_Nat.Commun_13_7850
PubMedID: 36543766
Gene_locus related to this paper: 9arch-PETcan211 , 9cren-PETcan204 , 9cyan-305pEE028 , 9bact-102Pee006 , 9chlr-7QJM202 , 9bact-a0a656d8b6 , 9actn-a0a1t4kk94 , 9burk-PET11 , 9bact-c3ryl0 , thecs-711Erick , 9actn-RII04304 , 9actn-h6wx58 , thecd-d1a9g5 , thecd-d1a2h1 , 9acto-d4q9n1 , 9acto-f7ix06 , 9gamm-a0a3l8bw54 , 9actn-a0a0n0my27 , 9burk-a0a1e4lw26 , 9actn-Alr407 , 9gamm-a0a3l8bdt3 , 9gamm-a0a2k9lit3 , 9bact-g9by57 , bacsu-pnbae , thefu-q6a0i4 , 9actn-a0a0n0ney5 , 9pseu-a0a1i6nu60 , thefu-q6a0i3 , 9actn-a0a147kjy8 , 9actn-e9upm2

Related information

Substrate Polyethylene-terephthalate
Gene_locus 9arch-PETcan211    9cren-PETcan204    9cyan-305pEE028    9bact-102Pee006    9chlr-7QJM202    9bact-a0a656d8b6    9actn-a0a1t4kk94    9burk-PET11    9bact-c3ryl0    thecs-711Erick    9actn-RII04304    9actn-h6wx58    thecd-d1a9g5    thecd-d1a2h1    9acto-d4q9n1    9acto-f7ix06    9gamm-a0a3l8bw54    9actn-a0a0n0my27    9burk-a0a1e4lw26    9actn-Alr407    9gamm-a0a3l8bdt3    9gamm-a0a2k9lit3    9bact-g9by57    bacsu-pnbae    thefu-q6a0i4    9actn-a0a0n0ney5    9pseu-a0a1i6nu60    thefu-q6a0i3    9actn-a0a147kjy8    9actn-e9upm2
Structure 7QJT    7QJS    7QJR    7QJQ    7QJP    7QJO    7QJN    7QJM

Citations formats

Erickson E, Gado JE, Avilan L, Bratti F, Brizendine RK, Cox PA, Gill R, Graham R, Kim DJ, Konig G, Michener WE, Poudel S, Ramirez KJ, Shakespeare TJ, Zahn M, Boyd ES, Payne CM, Dubois JL, Pickford AR, Beckham GT, McGeehan JE (2022)
Sourcing thermotolerant poly(ethylene terephthalate) hydrolase scaffolds from natural diversity
Nat Commun 13 :7850

Erickson E, Gado JE, Avilan L, Bratti F, Brizendine RK, Cox PA, Gill R, Graham R, Kim DJ, Konig G, Michener WE, Poudel S, Ramirez KJ, Shakespeare TJ, Zahn M, Boyd ES, Payne CM, Dubois JL, Pickford AR, Beckham GT, McGeehan JE (2022)
Nat Commun 13 :7850