Title : Full-length messenger RNA sequences greatly improve genome annotation - Haas_2002_Genome.Biol_3_RESEARCH0029 |
Author(s) : Haas BJ , Volfovsky N , Town CD , Troukhan M , Alexandrov N , Feldmann KA , Flavell RB , White O , Salzberg SL |
Ref : Genome Biol , 3 :RESEARCH0029 , 2002 |
Abstract :
BACKGROUND: Annotation of eukaryotic genomes is a complex endeavor that requires the integration of evidence from multiple, often contradictory, sources. With the ever-increasing amount of genome sequence data now available, methods for accurate identification of large numbers of genes have become urgently needed. In an effort to create a set of very high-quality gene models, we used the sequence of 5,000 full-length gene transcripts from Arabidopsis to re-annotate its genome. We have mapped these transcripts to their exact chromosomal locations and, using alignment programs, have created gene models that provide a reference set for this organism. |
PubMedSearch : Haas_2002_Genome.Biol_3_RESEARCH0029 |
PubMedID: 12093376 |
Gene_locus related to this paper: arath-AT1G74640 , arath-At2g47630 , arath-AT4G17480 , arath-AT4G24380 , arath-At5g11650 , arath-AT5G19290 , arath-AT5G19630 , arath-AT5G20060 , arath-AT5G20520 , arath-AtD14 , arath-F1O17.3 , arath-F1O17.5 , arath-F1P2.110 , arath-F12L6.7 , arath-F22K18.40 , arath-At3g60340 , arath-LCAT1 , arath-PLA16 , arath-Q8L996 , arath-q8lae9 , arath-Q8LF34 , arath-Q8LFB7 , arath-Q8LFU1 , arath-q8s8g6 , arath-q9ffg7 , arath-Q9LNR2 , arath-SCP40 , arath-At4g12230 , arath-AT4G10030 , arath-T5M16.2 , arath-MES14 , arath-T19F11.2 , arath-Y1457 , arath-T26B15.8 , arath-SFGH , arath-f4jt64 |
Haas BJ, Volfovsky N, Town CD, Troukhan M, Alexandrov N, Feldmann KA, Flavell RB, White O, Salzberg SL (2002)
Full-length messenger RNA sequences greatly improve genome annotation
Genome Biol
3 :RESEARCH0029
Haas BJ, Volfovsky N, Town CD, Troukhan M, Alexandrov N, Feldmann KA, Flavell RB, White O, Salzberg SL (2002)
Genome Biol
3 :RESEARCH0029