Kanost_2016_Insect.Biochem.Mol.Biol_76_118

Reference

Title : Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta - Kanost_2016_Insect.Biochem.Mol.Biol_76_118
Author(s) : Kanost MR , Arrese EL , Cao X , Chen YR , Chellapilla S , Goldsmith MR , Grosse-Wilde E , Heckel DG , Herndon N , Jiang H , Papanicolaou A , Qu J , Soulages JL , Vogel H , Walters J , Waterhouse RM , Ahn SJ , Almeida FC , An C , Aqrawi P , Bretschneider A , Bryant WB , Bucks S , Chao H , Chevignon G , Christen JM , Clarke DF , Dittmer NT , Ferguson LCF , Garavelou S , Gordon KHJ , Gunaratna RT , Han Y , Hauser F , He Y , Heidel-Fischer H , Hirsh A , Hu Y , Kalra D , Klinner C , Konig C , Kovar C , Kroll AR , Kuwar SS , Lee SL , Lehman R , Li K , Li Z , Liang H , Lovelace S , Lu Z , Mansfield JH , McCulloch KJ , Mathew T , Morton B , Muzny DM , Neunemann D , Ongeri F , Pauchet Y , Pu LL , Pyrousis I , Rao XJ , Redding A , Roesel C , Sanchez-Gracia A , Schaack S , Shukla A , Tetreau G , Wang Y , Xiong GH , Traut W , Walsh TK , Worley KC , Wu D , Wu W , Wu YQ , Zhang X , Zou Z , Zucker H , Briscoe AD , Burmester T , Clem RJ , Feyereisen R , Grimmelikhuijzen CJP , Hamodrakas SJ , Hansson BS , Huguet E , Jermiin LS , Lan Q , Lehman HK , Lorenzen M , Merzendorfer H , Michalopoulos I , Morton DB , Muthukrishnan S , Oakeshott JG , Palmer W , Park Y , Passarelli AL , Rozas J , Schwartz LM , Smith W , Southgate A , Vilcinskas A , Vogt R , Wang P , Werren J , Yu XQ , Zhou JJ , Brown SJ , Scherer SE , Richards S , Blissard GW
Ref : Insect Biochemistry & Molecular Biology , 76 :118 , 2016
Abstract :

Manduca sexta, known as the tobacco hornworm or Carolina sphinx moth, is a lepidopteran insect that is used extensively as a model system for research in insect biochemistry, physiology, neurobiology, development, and immunity. One important benefit of this species as an experimental model is its extremely large size, reaching more than 10 g in the larval stage. M. sexta larvae feed on solanaceous plants and thus must tolerate a substantial challenge from plant allelochemicals, including nicotine. We report the sequence and annotation of the M. sexta genome, and a survey of gene expression in various tissues and developmental stages. The Msex_1.0 genome assembly resulted in a total genome size of 419.4 Mbp. Repetitive sequences accounted for 25.8% of the assembled genome. The official gene set is comprised of 15,451 protein-coding genes, of which 2498 were manually curated. Extensive RNA-seq data from many tissues and developmental stages were used to improve gene models and for insights into gene expression patterns. Genome wide synteny analysis indicated a high level of macrosynteny in the Lepidoptera. Annotation and analyses were carried out for gene families involved in a wide spectrum of biological processes, including apoptosis, vacuole sorting, growth and development, structures of exoskeleton, egg shells, and muscle, vision, chemosensation, ion channels, signal transduction, neuropeptide signaling, neurotransmitter synthesis and transport, nicotine tolerance, lipid metabolism, and immunity. This genome sequence, annotation, and analysis provide an important new resource from a well-studied model insect species and will facilitate further biochemical and mechanistic experimental studies of many biological systems in insects.

PubMedSearch : Kanost_2016_Insect.Biochem.Mol.Biol_76_118
PubMedID: 27522922
Gene_locus related to this paper: manse-a0a921zfz9 , manse-a0a921yyy7 , manse-a0a921yk89 , manse-a0a921ykf8 , manse-a0a921yl30 , manse-a0a921yli3 , manse-a0a921ymj1 , manse-a0a921ymk6 , manse-a0a921yml5 , manse-a0a921ynv2 , manse-a0a921yp00 , manse-a0a921yp37 , manse-a0a921yp59 , manse-a0a921yp75 , manse-a0a921yvb8 , manse-a0a921yw47 , manse-a0a921ywd7 , manse-a0a921ywp0 , manse-a0a921yx99 , manse-a0a921yxa0 , manse-a0a921yz90 , manse-a0a921z4n6 , manse-a0a921z4w9 , manse-a0a921z4z9 , manse-a0a921z583 , manse-a0a921z5f1 , manse-a0a921z5v1 , manse-a0a921z6b4 , manse-a0a921z7k4 , manse-a0a921z855 , manse-a0a921z8j1 , manse-a0a921z8s7 , manse-a0a921z945 , manse-a0a921z9e7 , manse-a0a921zal9 , manse-a0a921zan0 , manse-a0a921zas5 , manse-a0a921zas6 , manse-a0a921zaz9 , manse-a0a921zbh3 , manse-a0a921zbl3 , manse-a0a921zc21 , manse-a0a921zcb8 , manse-a0a921zdd9 , manse-a0a921zdg4 , manse-a0a921zhk2 , manse-a0a921zhq0 , manse-a0a921zjj7 , manse-a0a921zjv1 , manse-a0a921zkk0 , manse-a0a921zm01 , manse-a0a921zmi4 , manse-a0a921zmk5 , manse-a0a921zmq8 , manse-a0a921zmw4 , manse-a0a921zn57 , manse-a0a921zpd3 , manse-a0a921zqa5 , manse-a0a921zrb7 , manse-a0a921zrx3 , manse-a0a921zsp9 , manse-a0a921zu55 , manse-a0a921zvs9 , manse-a0a922cc83 , manse-a0a922ccx7 , manse-a0a922cd23 , manse-a0a922cd99 , manse-a0a922cda0 , manse-a0a922cdq5 , manse-a0a922cdq9 , manse-a0a922cfv1 , manse-a0a922cfz0 , manse-a0a922cg77 , manse-a0a922cgw7 , manse-a0a922ch94 , manse-a0a922chd6 , manse-a0a922ci18 , manse-a0a922ci74 , manse-a0a922cip4 , manse-a0a922ciy5 , manse-a0a922cjc7 , manse-a0a922cjh4 , manse-a0a922cl68 , manse-a0a922cmk9 , manse-a0a922cms2 , manse-a0a922cmt1 , manse-a0a922cp39 , manse-a0a922cpc1 , manse-a0a922cpx4 , manse-a0a922crf7 , manse-a0a922csu0 , manse-a0a922ctw7 , manse-a0a922cu37 , manse-a0a922cu57 , manse-a0a922cuy9 , manse-a0a922cv91 , manse-a0a922cvd0 , manse-a0a922cvp5 , manse-a0a922cw30 , manse-a0a922cwe4 , manse-a0a922cwp7 , manse-a0a922cwu2 , manse-a0a922cye5 , manse-a0a922d0s4 , manse-a0a977t6q6

Related information

Gene_locus manse-a0a921zfz9    manse-a0a921yyy7    manse-a0a921yk89    manse-a0a921ykf8    manse-a0a921yl30    manse-a0a921yli3    manse-a0a921ymj1    manse-a0a921ymk6    manse-a0a921yml5    manse-a0a921ynv2    manse-a0a921yp00    manse-a0a921yp37    manse-a0a921yp59    manse-a0a921yp75    manse-a0a921yvb8    manse-a0a921yw47    manse-a0a921ywd7    manse-a0a921ywp0    manse-a0a921yx99    manse-a0a921yxa0    manse-a0a921yz90    manse-a0a921z4n6    manse-a0a921z4w9    manse-a0a921z4z9    manse-a0a921z583    manse-a0a921z5f1    manse-a0a921z5v1    manse-a0a921z6b4    manse-a0a921z7k4    manse-a0a921z855    manse-a0a921z8j1    manse-a0a921z8s7    manse-a0a921z945    manse-a0a921z9e7    manse-a0a921zal9    manse-a0a921zan0    manse-a0a921zas5    manse-a0a921zas6    manse-a0a921zaz9    manse-a0a921zbh3    manse-a0a921zbl3    manse-a0a921zc21    manse-a0a921zcb8    manse-a0a921zdd9    manse-a0a921zdg4    manse-a0a921zhk2    manse-a0a921zhq0    manse-a0a921zjj7    manse-a0a921zjv1    manse-a0a921zkk0    manse-a0a921zm01    manse-a0a921zmi4    manse-a0a921zmk5    manse-a0a921zmq8    manse-a0a921zmw4    manse-a0a921zn57    manse-a0a921zpd3    manse-a0a921zqa5    manse-a0a921zrb7    manse-a0a921zrx3    manse-a0a921zsp9    manse-a0a921zu55    manse-a0a921zvs9    manse-a0a922cc83    manse-a0a922ccx7    manse-a0a922cd23    manse-a0a922cd99    manse-a0a922cda0    manse-a0a922cdq5    manse-a0a922cdq9    manse-a0a922cfv1    manse-a0a922cfz0    manse-a0a922cg77    manse-a0a922cgw7    manse-a0a922ch94    manse-a0a922chd6    manse-a0a922ci18    manse-a0a922ci74    manse-a0a922cip4    manse-a0a922ciy5    manse-a0a922cjc7    manse-a0a922cjh4    manse-a0a922cl68    manse-a0a922cmk9    manse-a0a922cms2    manse-a0a922cmt1    manse-a0a922cp39    manse-a0a922cpc1    manse-a0a922cpx4    manse-a0a922crf7    manse-a0a922csu0    manse-a0a922ctw7    manse-a0a922cu37    manse-a0a922cu57    manse-a0a922cuy9    manse-a0a922cv91    manse-a0a922cvd0    manse-a0a922cvp5    manse-a0a922cw30    manse-a0a922cwe4    manse-a0a922cwp7    manse-a0a922cwu2    manse-a0a922cye5    manse-a0a922d0s4    manse-a0a977t6q6
Gene_locus_frgt manse-a0a922cxl4

Citations formats

Kanost MR, Arrese EL, Cao X, Chen YR, Chellapilla S, Goldsmith MR, Grosse-Wilde E, Heckel DG, Herndon N, Jiang H, Papanicolaou A, Qu J, Soulages JL, Vogel H, Walters J, Waterhouse RM, Ahn SJ, Almeida FC, An C, Aqrawi P, Bretschneider A, Bryant WB, Bucks S, Chao H, Chevignon G, Christen JM, Clarke DF, Dittmer NT, Ferguson LCF, Garavelou S, Gordon KHJ, Gunaratna RT, Han Y, Hauser F, He Y, Heidel-Fischer H, Hirsh A, Hu Y, Kalra D, Klinner C, Konig C, Kovar C, Kroll AR, Kuwar SS, Lee SL, Lehman R, Li K, Li Z, Liang H, Lovelace S, Lu Z, Mansfield JH, McCulloch KJ, Mathew T, Morton B, Muzny DM, Neunemann D, Ongeri F, Pauchet Y, Pu LL, Pyrousis I, Rao XJ, Redding A, Roesel C, Sanchez-Gracia A, Schaack S, Shukla A, Tetreau G, Wang Y, Xiong GH, Traut W, Walsh TK, Worley KC, Wu D, Wu W, Wu YQ, Zhang X, Zou Z, Zucker H, Briscoe AD, Burmester T, Clem RJ, Feyereisen R, Grimmelikhuijzen CJP, Hamodrakas SJ, Hansson BS, Huguet E, Jermiin LS, Lan Q, Lehman HK, Lorenzen M, Merzendorfer H, Michalopoulos I, Morton DB, Muthukrishnan S, Oakeshott JG, Palmer W, Park Y, Passarelli AL, Rozas J, Schwartz LM, Smith W, Southgate A, Vilcinskas A, Vogt R, Wang P, Werren J, Yu XQ, Zhou JJ, Brown SJ, Scherer SE, Richards S, Blissard GW (2016)
Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta
Insect Biochemistry & Molecular Biology 76 :118

Kanost MR, Arrese EL, Cao X, Chen YR, Chellapilla S, Goldsmith MR, Grosse-Wilde E, Heckel DG, Herndon N, Jiang H, Papanicolaou A, Qu J, Soulages JL, Vogel H, Walters J, Waterhouse RM, Ahn SJ, Almeida FC, An C, Aqrawi P, Bretschneider A, Bryant WB, Bucks S, Chao H, Chevignon G, Christen JM, Clarke DF, Dittmer NT, Ferguson LCF, Garavelou S, Gordon KHJ, Gunaratna RT, Han Y, Hauser F, He Y, Heidel-Fischer H, Hirsh A, Hu Y, Kalra D, Klinner C, Konig C, Kovar C, Kroll AR, Kuwar SS, Lee SL, Lehman R, Li K, Li Z, Liang H, Lovelace S, Lu Z, Mansfield JH, McCulloch KJ, Mathew T, Morton B, Muzny DM, Neunemann D, Ongeri F, Pauchet Y, Pu LL, Pyrousis I, Rao XJ, Redding A, Roesel C, Sanchez-Gracia A, Schaack S, Shukla A, Tetreau G, Wang Y, Xiong GH, Traut W, Walsh TK, Worley KC, Wu D, Wu W, Wu YQ, Zhang X, Zou Z, Zucker H, Briscoe AD, Burmester T, Clem RJ, Feyereisen R, Grimmelikhuijzen CJP, Hamodrakas SJ, Hansson BS, Huguet E, Jermiin LS, Lan Q, Lehman HK, Lorenzen M, Merzendorfer H, Michalopoulos I, Morton DB, Muthukrishnan S, Oakeshott JG, Palmer W, Park Y, Passarelli AL, Rozas J, Schwartz LM, Smith W, Southgate A, Vilcinskas A, Vogt R, Wang P, Werren J, Yu XQ, Zhou JJ, Brown SJ, Scherer SE, Richards S, Blissard GW (2016)
Insect Biochemistry & Molecular Biology 76 :118