Kim_2010_Nucleic.Acids.Res_38_D437

Reference

Title : BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum - Kim_2010_Nucleic.Acids.Res_38_D437
Author(s) : Kim HS , Murphy T , Xia J , Caragea D , Park Y , Beeman RW , Lorenzen MD , Butcher S , Manak JR , Brown SJ
Ref : Nucleic Acids Research , 38 :D437 , 2010
Abstract :

BeetleBase (http:\/\/www.beetlebase.org) has been updated to provide more comprehensive genomic information for the red flour beetle Tribolium castaneum. The database contains genomic sequence scaffolds mapped to 10 linkage groups (genome assembly release Tcas_3.0), genetic linkage maps, the official gene set, Reference Sequences from NCBI (RefSeq), predicted gene models, ESTs and whole-genome tiling array data representing several developmental stages. The database was reconstructed using the upgraded Generic Model Organism Database (GMOD) modules. The genomic data is stored in a PostgreSQL relatational database using the Chado schema and visualized as tracks in GBrowse. The updated genetic map is visualized using the comparative genetic map viewer CMAP. To enhance the database search capabilities, the BLAST and BLAT search tools have been integrated with the GMOD tools. BeetleBase serves as a long-term repository for Tribolium genomic data, and is compatible with other model organism databases.

PubMedSearch : Kim_2010_Nucleic.Acids.Res_38_D437
PubMedID: 19820115
Gene_locus related to this paper: trica-ACHE1 , trica-ACHE2 , trica-d2a0g9 , trica-d2a0h0 , trica-d2a0w9 , trica-d2a0x0 , trica-d2a0x1 , trica-d2a0x3 , trica-d2a0x4.1 , trica-d2a0x4.2 , trica-d2a0x6 , trica-d2a2b8 , trica-d2a2h1 , trica-d2a3c3 , trica-d2a3g9 , trica-d2a5y5 , trica-d2a309 , trica-d2a514 , trica-d2a515 , trica-d2a516 , trica-d2a577 , trica-d2a578 , trica-d6w6x8 , trica-d6w7f9 , trica-d6w7h2 , trica-d6w8e7 , trica-d6w9c0 , trica-d6w855 , trica-d6wac8 , trica-d6wan4 , trica-d6wd50 , trica-d6wd73 , trica-d6wd74 , trica-A0A139WM97 , trica-d6wfu3 , trica-d6wgl2 , trica-d6wj57 , trica-d6wj59 , trica-d6wjs3 , trica-d6wl31 , trica-d6wnv1 , trica-d6wpl0 , trica-d6wqd6 , trica-d6wqr4 , trica-d6ws52 , trica-d6wsm0 , trica-d6wu38 , trica-d6wu39 , trica-d6wu40 , trica-d6wu41 , trica-d6wu44 , trica-d6wvk5 , trica-d6wvz7 , trica-d6wwu9 , trica-d6wwv0 , trica-d6wxz0 , trica-d6wyy1 , trica-d6wyy2 , trica-d6x0z2 , trica-d6x0z5 , trica-d6x0z6 , trica-d6x4b2 , trica-d6x4e8 , trica-d6x4e9 , trica-d6x197 , trica-d7eip7 , trica-d7eld3 , trica-d7us45 , trica-q5wm43 , trica-q5zex9 , trica-d6wie5 , trica-d6w7t0 , trica-d6x4h0 , trica-d6x4h1 , trica-a0a139wae8 , trica-a0a139wc96 , trica-d6x325 , trica-d2a4s2 , trica-d6wvw8 , trica-a0a139wfm6 , trica-d6wua5 , trica-a0a139waj0

Related information

Gene_locus trica-ACHE1    trica-ACHE2    trica-d2a0g9    trica-d2a0h0    trica-d2a0w9    trica-d2a0x0    trica-d2a0x1    trica-d2a0x3    trica-d2a0x4.1    trica-d2a0x4.2    trica-d2a0x6    trica-d2a2b8    trica-d2a2h1    trica-d2a3c3    trica-d2a3g9    trica-d2a5y5    trica-d2a309    trica-d2a514    trica-d2a515    trica-d2a516    trica-d2a577    trica-d2a578    trica-d6w6x8    trica-d6w7f9    trica-d6w7h2    trica-d6w8e7    trica-d6w9c0    trica-d6w855    trica-d6wac8    trica-d6wan4    trica-d6wd50    trica-d6wd73    trica-d6wd74    trica-A0A139WM97    trica-d6wfu3    trica-d6wgl2    trica-d6wj57    trica-d6wj59    trica-d6wjs3    trica-d6wl31    trica-d6wnv1    trica-d6wpl0    trica-d6wqd6    trica-d6wqr4    trica-d6ws52    trica-d6wsm0    trica-d6wu38    trica-d6wu39    trica-d6wu40    trica-d6wu41    trica-d6wu44    trica-d6wvk5    trica-d6wvz7    trica-d6wwu9    trica-d6wwv0    trica-d6wxz0    trica-d6wyy1    trica-d6wyy2    trica-d6x0z2    trica-d6x0z5    trica-d6x0z6    trica-d6x4b2    trica-d6x4e8    trica-d6x4e9    trica-d6x197    trica-d7eip7    trica-d7eld3    trica-d7us45    trica-q5wm43    trica-q5zex9    trica-d6wie5    trica-d6w7t0    trica-d6x4h0    trica-d6x4h1    trica-a0a139wae8    trica-a0a139wc96    trica-d6x325    trica-d2a4s2    trica-d6wvw8    trica-a0a139wfm6    trica-d6wua5    trica-a0a139waj0
Gene_locus_frgt trica-d2a0x2    trica-d2a327    trica-d2cfz4    trica-d6wg04    trica-d6wg05    trica-d6wnd9    trica-d6wnr7    trica-d6wu42    trica-d7ekt3

Citations formats

Kim HS, Murphy T, Xia J, Caragea D, Park Y, Beeman RW, Lorenzen MD, Butcher S, Manak JR, Brown SJ (2010)
BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum
Nucleic Acids Research 38 :D437

Kim HS, Murphy T, Xia J, Caragea D, Park Y, Beeman RW, Lorenzen MD, Butcher S, Manak JR, Brown SJ (2010)
Nucleic Acids Research 38 :D437