PHB_depolymerase_PhaZ
Relationship
Comment
C-terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This enzyme degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid. Intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting.
Database
Interpro : IPR010915 Polyhydroxyalkanoate depolymerase , IPR009656 PHB de-polymerase, C-terminal
PIRSF : No PIRSF
Pdoc : No Pdoc
Pfam : PF06850 PHB_depo_C
Prints : No Print
EC Number : No EC Number
Sequences
| Peptide in | Fasta |
| Nucleotide in | Fasta |
| Alignment with Multalin | Text only |
| Seed alignment with MAFFT | No colour / coloured with Mview |
| Alignment with MAFFT | No colour / coloured with Mview |
| Dendrogram | The dnd file |
| Gene_locus | Name | Species |
|---|---|---|
| 9bact-q7x356 | uncultured Acidobacteria bacterium putative intracellular phb depolymerase | uncultured Acidobacteria bacterium |
| 9burk-q459w5 | Burkholderia cenocepacia (strains AU 1054\; HI2424) phb de-polymerase, c-terminal | Burkholderia cenocepacia |
| 9rhob-q2cfv6 | Oceanicola granulosus HTCC2516 hypothetical protein | Oceanicola granulosus HTCC2516 |
| 9sphn-q2n733 | Erythrobacter litoralis HTCC2594 hypothetical protein | Erythrobacter litoralis HTCC2594 |
| 9sphn-q3v955 | Sphingopyxis alaskensis RB2256 polyhydroxyalkanoate depolymerase precursor | Sphingopyxis alaskensis RB2256 |
| acicj-a5g268 | Acidiphilium cryptum, Acidiphilium multivorum, polyhydroxyalkanoate depolymerase, intracellular | Acidiphilium cryptum |
| agrt5-a9ckt2 | Agrobacterium tumefaciens (strain C58 \/ ATCC 33970) intracellular phb depolymerase (agr_c_24p) | Agrobacterium tumefaciens |
| alceu-PHAZRE | Alcaligenes eutrophus, Cupriavidus necator (Ralstonia eutropha) intracellular phb depolymerase | Alcaligenes eutrophus |
| alceu-q6ec20 | Alcaligenes eutrophus, Cupriavidus necator (Ralstonia eutropha) phb-depolymerase 5 | Alcaligenes eutrophus |
| bora1-q2kun8 | Bordetella avium (strain 197N) poly-beta-hydroxybutyrate (phb) depolymerase | Bordetella avium |
| borpe-q7vtg0 | Bordetella pertussis Bordetella bronchiseptica (Alcaligenes bronchisepticus) Bordetella parapertussis intracellular phb depolymerase | Bordetella pertussis |
| braja-BLR0908 | Bradyrhizobium japonicum blr0908 protein | Bradyrhizobium japonicum |
| braja-BLR6703 | Bradyrhizobium japonicum blr6703 protein | Bradyrhizobium japonicum |
| brasb-a5epv4 | Bradyrhizobium sp. polyhydroxyalkanoate depolymerase | Bradyrhizobium sp. BTAi1 |
| brasb-a5etk7 | Bradyrhizobium sp., polyhydroxyalkanoate depolymerase | Bradyrhizobium sp. BTAi1 |
| burca-q1blj2 | Burkholderia cenocepacia, Burkholderia ambifaria, polyhydroxyalkanoate depolymerase | Burkholderia cenocepacia |
| burma-q629u0 | Burkholderia mallei (Pseudomonas mallei), Burkholderia pseudomallei (Pseudomonas pseudomallei), Burkholderia thailandensis intracellular polyhydroxyalkanoate depolymerase (EC 3.1.1.-) | Burkholderia mallei |
| burma-q62ie8 | Burkholderia mallei (Pseudomonas mallei), Burkholderia pseudomallei (Pseudomonas pseudomallei), Burkholderia thailandensis, intracellular phb depolymerase (EC 3.1.1.-) | Burkholderia mallei |
| burs3-q392z0 | Burkholderia lata polyhydroxyalkanoate depolymerase | Burkholderia sp. |
| burs3-q39e56 | Burkholderia cenocepacia, Burkholderia sp., Burkholderia multivorans, polyhydroxyalkanoate depolymerase | Burkholderia cenocepacia |
| burs3-q39hp9 | Burkholderia lata polyhydroxyalkanoate depolymerase | Burkholderia sp. |
| burvg-a4jgk9 | Burkholderia vietnamiensis, Burkholderia ambifaria, polyhydroxyalkanoate depolymerase precursor | Burkholderia vietnamiensis |
| burvi-q4btc5 | Burkholderia vietnamiensis G4 Burkholderia ambifaria AMMD phb de-polymerase, c-terminal | Burkholderia vietnamiensis |
| caucr-PHAZ | Caulobacter crescentus, Caulobacter segnis, intracellular phb depolymerase (fragment) | Caulobacter crescentus |
| colp3-q47ws7 | Colwellia psychrerythraea (strain 34H \/ ATCC BAA-681) (Vibrio psychroerythus) polyhydroxyalkanoate depolymerase, intracellular (EC 3.1.1.-) | Colwellia psychrerythraea |
| cupne-q7wt48 | Cupriavidus necator (Alcaligenes eutrophus) (Ralstonia eutropha) intracellular phb depolymerase phaz3 | Alcaligenes eutrophus |
| cupne-q7wt49 | Cupriavidus necator (Alcaligenes eutrophus) (Ralstonia eutropha) intracellular phb depolymerase phaz2 | Alcaligenes eutrophus |
| cuppj-q46s33 | Cupriavidus pinatubonensis (strain JMP134 \/ LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) polyhydroxyalkanoate depolymerase | Ralstonia eutropha |
| cuppj-q473k5 | Cupriavidus pinatubonensis (strain JMP134 \/ LMG 1197) (Alcaligenes eutrophus) (Ralstonia eutropha) polyhydroxyalkanoate depolymerase | Ralstonia eutropha |
| cuppj-q474p1 | Cupriavidus pinatubonensis (Alcaligenes eutrophus) (Ralstonia eutropha) polyhydroxyalkanoate depolymerase | Cupriavidus pinatubonensis |
| herss-d8iqm4 | Herbaspirillum seropedicae Poly[D(-)-3-hydroxyalkanoate] depolymerase protein phaZ | Herbaspirillum seropedicae |
| jansc-q28tc9 | Jannaschia sp. (strain CCS1) polyhydroxyalkanoate depolymerase, intracellular | Jannaschia sp. CCS1 |
| magmg-q847m8 | Magnetospirillum magnetotacticum (Aquaspirillum magnetotacticum) phaz1 | Magnetospirillum magnetotacticum |
| magsa-q2wa03 | Magnetospirillum magneticum (strain AMB-1 \/ ATCC 700264) poly-beta-hydroxyalkanoate depolymerase | Magnetospirillum magneticum |
| meslo-MLL4552 | Rhizobium loti (Mesorhizobium loti) intracellular phb depolymerase | Rhizobium loti |
| messb-q11kj0 | Mesorhizobium sp. BNC1 polyhydroxyalkanoate depolymerase | Mesorhizobium sp. BNC1 |
| metex-q6tn85 | Methylobacterium extorquens intracellular phb depolymerase | Methylobacterium extorquens |
| metex-q9api5 | Methylobacterium extorquens intracellular phb depolymerase | Methylobacterium extorquens |
| mobas-q1yeu4 | Aurantimonas manganoxydans SI85-9A1 poly-beta-hydroxyalkanoate depolymerase | Aurantimonas manganoxydans SI85-9A1 |
| nithx-q1qrl8 | Nitrobacter hamburgensis (strain X14 \/ DSM 10229) polyhydroxyalkanoate depolymerase, intracellular | Nitrobacter hamburgensis |
| nitwn-q3swe3 | Nitrobacter winogradskyi, Nitrobacter sp., polyhydroxyalkanoate depolymerase | Nitrobacter winogradskyi |
| novad-q2g3f6 | Novosphingobium aromaticivorans (strain DSM 12444) polyhydroxyalkanoate depolymerase, intracellular | Novosphingobium aromaticivorans |
| parde-Q9WX79 | Paracoccus denitrificans, regulator for granule-associated protein and trna genes | Paracoccus denitrificans |
| polsj-q12bj2 | Polaromonas sp. (strain JS666 \/ ATCC BAA-500) polyhydroxyalkanoate depolymerase | Polaromonas sp. JS666 |
| polsj-q12ch0 | Polaromonas sp. JS666 polyhydroxyalkanoate depolymerase | Polaromonas sp. JS666 |
| ralme-q1ljv2 | Ralstonia metallidurans (strain CH34 \/ ATCC 43123 \/ DSM 2839) polyhydroxyalkanoate depolymerase, intracellular | Ralstonia metallidurans |
| ralme-q1lpm3 | Ralstonia metallidurans (strain CH34 \/ ATCC 43123 \/ DSM 2839) polyhydroxyalkanoate depolymerase, intracellular | Ralstonia metallidurans |
| ralso-PHAZ | Ralstonia solanacearum (Pseudomonas solanacearum) probable poly[d(-)-3-hydroxybutyrate] depolymerase protein | Ralstonia solanacearum |
| rhiec-q2ke86 | Rhizobium etli, Rhizobium leguminosarum, probable intracellular phb depolymerase protein | Rhizobium etli |
| rhil3-q1m5s6 | Rhizobium leguminosarum bv. viciae (strain 3841) putative intracellular phb depolymerase | Rhizobium leguminosarum bv. viciae |
| rhime-q92td3 | Rhizobium meliloti (Sinorhizobium meliloti) hypothetical protein smc02770 | Sinorhizobium meliloti |
| rhoca-Q8VMB0 | Rhodobacter capsulatus (Rhodopseudomonas capsulata) pha1 | Rhodobacter capsulatus |
| rhofd-q21vz6 | Rhodoferax ferrireducens (strain DSM 15236 \/ ATCC BAA-621 \/ T118) polyhydroxyalkanoate depolymerase, intracellular | Rhodoferax ferrireducens |
| rhop2-q2j435 | Rhodopseudomonas palustris (strain HaA2) polyhydroxyalkanoate depolymerase, intracellular | Rhodopseudomonas palustris |
| rhop5-q07v49 | Rhodopseudomonas palustris (strain BisA53) polyhydroxyalkanoate depolymerase | Rhodopseudomonas palustris BisA53 |
| rhopa-q37dd8 | Rhodopseudomonas palustris BisB5 polyhydroxyalkanoate depolymerase | Rhodopseudomonas palustris BisB5 |
| rhopa-q6nc97 | Rhodopseudomonas palustris putative intracellular phb depolymerase | Rhodopseudomonas palustris |
| rhopb-q21cf5 | Rhodopseudomonas palustris (strain BisB18) polyhydroxyalkanoate depolymerase, intracellular | Rhodopseudomonas palustris |
| rhoru-PHAZ2 | Rhodospirillum rubrum, phaz2 poly(r)-hydroxyalkanoic acid synthase, class I | Rhodospirillum rubrum |
| rhosh-q1l7n7 | Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides) phbZ phb depolymerase | Rhodobacter sphaeroides |
| ricbr-q1rj78 | Rickettsia bellii (strain RML369-C) poly-beta-hydroxyalkanoate depolymerase | Rickettsia bellii |
| ricfe-q4umw9 | Rickettsia felis (Rickettsia azadi) poly-beta-hydroxyalkanoate depolymerase | Rickettsia felis |
| ricpr-RP681 | Rickettsia prowazekii Rickettsia conorii hypothetical protein rp681 | Rickettsia prowazekii |
| ricty-q68w56 | Rickettsia typhi hypothetical protein | Rickettsia typhi |
| sacd2-q21jj4 | Saccharophagus degradans (strain 2-40 \/ ATCC 43961 \/ DSM 17024) hypothetical protein | Saccharophagus degradans |
| silpo-q5ltw9 | Silicibacter pomeroyi polyhydroxyalkanoate depolymerase, intracellular | Silicibacter pomeroyi |
| silst-q1gfw7 | Silicibacter sp., polyhydroxyalkanoate depolymerase precursor | Silicibacter sp. TM1040 |
| xanac-q8pmm6 | Xanthomonas axonopodis (pv. citri) Xanthomonas campestris pv. vesicatoria (strain 85-10) poly-beta-hydroxyalkanoate phb depolymerase | Xanthomonas axonopodis |
| xancp-q8pax3 | Xanthomonas campestris (pv. campestris) phb depolymerase | Xanthomonas campestris |
| xanor-q5h1g5 | Xanthomonas oryzae pv. oryzae (and strain MAFF 311018) phb depolymerase | Xanthomonas oryzae pv. oryzae |
| xanp2-a7ih87 | Xanthobacter autotrophicus (strain ATCC BAA-1158 \/ Py2) polyhydroxyalkanoate depolymerase | Xanthobacter sp. |
| xanp2-q26n22 | Xanthobacter sp. (strain Py2) intracellular phb depolymerase | Xanthobacter sp. |
| xanp2-q26n87 | Xanthobacter sp. (strain Py2) polyhydroxyalkanoate depolymerase | Xanthobacter sp. |
| Gene_locus_frgt | Name | Species |
|---|---|---|
| 9sphn-q1n7d4 | Sphingomonas sp. SKA58 polyhydroxyalkanoate depolymerase | Sphingomonas sp. SKA58 |
| 9sphn-q1n7d5 | Sphingomonas sp. SKA58 polyhydroxyalkanoate depolymerase | Sphingomonas sp. SKA58 |
| alceu-q7wxf6 | Alcaligenes eutrophus, Cupriavidus necator (Ralstonia eutropha) putative phb depolymerase | Alcaligenes eutrophus |
| azobr-q71kw6 | Azospirillum brasilense phb depolymerase | Azospirillum brasilense |
| riccn-q5mxl5 | Rickettsia conorii rc1042 (fragment) | Rickettsia conorii |
| ricco-RC1043 | Rickettsia conorii similarity to rp681 | Rickettsia conorii |
| ricsi-q7p9g3 | Rickettsia sibirica hypothetical rp681 | Rickettsia sibirica |
| Substrate | Chemical Nomenclature | Proteins |
|---|---|---|
| PHB | poly(3-hydroxybutyrate) | psesp-PHBDP1 aspfu-q4w9v8 crysp-Q874E9 alceu-phbc |
References (1)
| Title : Ralstonia eutropha H16 encodes two and possibly three intracellular Poly[D-(-)-3-hydroxybutyrate] depolymerase genes - York_2003_J.Bacteriol_185_3788 |
| Author(s) : York GM , Lupberger J , Tian J , Lawrence AG , Stubbe J , Sinskey AJ |
| Ref : Journal of Bacteriology , 185 :3788 , 2003 |
| Abstract : |
| PubMedSearch : York_2003_J.Bacteriol_185_3788 |
| PubMedID: 12813072 |
| Gene_locus related to this paper: cupne-q7wt48 , cupne-q7wt49 |