Gene_Locus Report

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Gene_locus Report for: actch-q0zpu6

Actinidia chinensis (Kiwi) (Yangtao). CXE carboxylesterase

Comment
Other strains: Actinidia chinensis var. chinensis


Relationship
Family|Plant_carboxylesterase
Block| H
Position in NCBI Life Tree|Actinidia chinensis
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > asterids: N E > Ericales: N E > Actinidiaceae: N E > Actinidia: N E > Actinidia chinensis: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : DQ279925, NKQK01000008
2 UniProt : Q0ZPU6, A0A2R6RA31
2 UniProt : Q0ZPU6, A0A2R6RA31
2 Interpro : Q0ZPU6, A0A2R6RA31
2 Prodom : Q0ZPU6, A0A2R6RA31
2 Pfam : Q0ZPU6, A0A2R6RA31
2 PIRSF : Q0ZPU6, A0A2R6RA31
2 SUPERFAM : Q0ZPU6, A0A2R6RA31
Sequence
Graphical view for this peptide sequence: actch-q0zpu6
Colored MSA for Plant_carboxylesterase (raw)
MVCEKNIVEEVSGWLRVFDDGSVDRTWTGPPEVKFMAEPVPPHSEFINGV
ATRDVVIDPKSGLRVRIYLPDTADYEKLPILLHFHGGGFCISQADWYMYY
SIYTRLALSAKAICVSVYLRLAPEHRLPAACHDGFSALLWLRSLAQSGSS
SSHEPWLNAYADFNRVFLIGDSSGGNLVHQVAAWAGKLDLGPLRLAGAIP
IHLGFVRSQRSKSELEEPESPFLTLDMVDKFLKLALPVGSTKDHPITCPM
GAGISGLRLPPMLFCVAEKDLIRDTEMEYYEAVKNACNTNNNNYEEVDHV
ELLISSGMGHSFYLNKIAVDMDDKTAQETQKLIQGIADFINKH
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MVCEKNIVEEVSGWLRVFDDGSVDRTWTGPPEVKFMAEPVPPHSEFINGV
ATRDVVIDPKSGLRVRIYLPDTADYEKLPILLHFHGGGFCISQADWYMYY
SIYTRLALSAKAICVSVYLRLAPEHRLPAACHDGFSALLWLRSLAQSGSS
SSHEPWLNAYADFNRVFLIGDSSGGNLVHQVAAWAGKLDLGPLRLAGAIP
IHLGFVRSQRSKSELEEPESPFLTLDMVDKFLKLALPVGSTKDHPITCPM
GAGISGLRLPPMLFCVAEKDLIRDTEMEYYEAVKNACNTNNNNYEEVDHV
ELLISSGMGHSFYLNKIAVDMDDKTAQETQKLIQGIADFINKH


Reference
    Title: A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants
    Pilkington SM, Crowhurst R, Hilario E, Nardozza S, Fraser L, Peng Y, Gunaseelan K, Simpson R, Tahir J and Schaffer RJ <89 more author(s)>
    Ref: BMC Genomics, 19:257, 2018 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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