Gene_Locus Report

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Gene_locus Report for: bovin-ABHD16A

Bos taurus (Bovine) Phosphatidylserine lipase ABHD16A HLA-B-associated transcript 5 BAT5

Relationship
Family|ABHD16
Block| X
Position in NCBI Life Tree|Bos taurus
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Craniata: N E > Vertebrata: N E > Gnathostomata: N E > Teleostomi: N E > Euteleostomi: N E > Sarcopterygii: N E > Dipnotetrapodomorpha: N E > Tetrapoda: N E > Amniota: N E > Mammalia: N E > Theria: N E > Eutheria: N E > Boreoeutheria: N E > Laurasiatheria: N E > Cetartiodactyla: N E > Ruminantia: N E > Pecora: N E > Bovidae: N E > Bovinae: N E > Bos: N E > Bos taurus: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : BT025421, DAAA02055381
2 UniProt : Q1JPD2, F1MRZ4
2 UniProt : Q1JPD2, F1MRZ4
2 Interpro : Q1JPD2, F1MRZ4
2 Prodom : Q1JPD2, F1MRZ4
2 Pfam : Q1JPD2, F1MRZ4
2 PIRSF : Q1JPD2, F1MRZ4
2 SUPERFAM : Q1JPD2, F1MRZ4
Sequence
Graphical view for this peptide sequence: bovin-ABHD16A
Colored MSA for ABHD16 (raw)
MAKLLSCVLGPRLYKIYRERDSERAPSSVPGTPTSVTNPHSSSWDTYYQP
RALEKHADSILALASVFWSISYYSSPFAFFYLYRKGYLSLSKVVPFSHYA
GTLLLLLAGVACLRGIGRWTNPQYRQFITILEATHRNHSAENKRQLANYN
FDFRSWPVDFHWEEPSSRKESRGGPSRRGVALLRPEPLHRGTADTFLNRV
KKLPCQITSYLVAHTLGRRMLYPGSVYLLQKALMPVLLQGQARLVEECHG
RRAKLLACDGNEIDTMFVDRRGTAEPQGQKLVICCEGNAGFYEVGCVSTP
LEAGYSVLGWNHPGFAGSTGVPFPQNEANAMDVVVQFAIHRLGFQPEDII
LYAWSIGGFTATWAAMSYPDISAVILDASFDDLVPLALKVMPDSWRGLVT
RTVRQHLNLNNAEQLCRYQGPVLLIRRTRDEIITTTVPEDIMSNRGNDLL
LKFLQHRYPRVMAEEGLRVVRQWLEASSQLEEASIYSRWEVEEDWCLSVL
RSYQAEHGPEFPWSVGEDMSADGRRQLALFLAQKHLNNFEATHCTPLPAQ
NFQMPWHL
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MAKLLSCVLGPRLYKIYRERDSERAPSSVPGTPTSVTNPHSSSWDTYYQP
RALEKHADSILALASVFWSISYYSSPFAFFYLYRKGYLSLSKVVPFSHYA
GTLLLLLAGVACLRGIGRWTNPQYRQFITILEATHRNHSAENKRQLANYN
FDFRSWPVDFHWEEPSSRKESRGGPSRRGVALLRPEPLHRGTADTFLNRV
KKLPCQITSYLVAHTLGRRMLYPGSVYLLQKALMPVLLQGQARLVEECHG
RRAKLLACDGNEIDTMFVDRRGTAEPQGQKLVICCEGNAGFYEVGCVSTP
LEAGYSVLGWNHPGFAGSTGVPFPQNEANAMDVVVQFAIHRLGFQPEDII
LYAWSIGGFTATWAAMSYPDISAVILDASFDDLVPLALKVMPDSWRGLVT
RTVRQHLNLNNAEQLCRYQGPVLLIRRTRDEIITTTVPEDIMSNRGNDLL
LKFLQHRYPRVMAEEGLRVVRQWLEASSQLEEASIYSRWEVEEDWCLSVL
RSYQAEHGPEFPWSVGEDMSADGRRQLALFLAQKHLNNFEATHCTPLPAQ
NFQMPWHL


References
    Title: A whole-genome assembly of the domestic cow, Bos taurus
    Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP and Salzberg SL <5 more author(s)>
    Ref: Genome Biol, 10:R42, 2009 : PubMed

            

    Title: Characterization of 954 bovine full-CDS cDNA sequences
    Harhay GP, Sonstegard TS, Keele JW, Heaton MP, Clawson ML, Snelling WM, Wiedmann RT, Van Tassell CP, Smith TP
    Ref: BMC Genomics, 6:166, 2005 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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