ciosa-d2x2f8

 
Ciona savignyi (Pacific transparent sea squirt) Neuroligin

Relationship
Family Neuroligin
Block C
Ciona savignyi position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Tunicata: N E > Ascidiacea: N E > Enterogona: N E > Phlebobranchia: N E > Cionidae: N E > Ciona: N E > Ciona savignyi: N E

Molecular evidence
Database
No mutation
No structure
No kinetic



1 Genbank : GQ489189
2 UniProt : D2X2F8, H2YJH1
2 UniProtTrembl : D2X2F8, H2YJH1
2 Interpro : D2X2F8, H2YJH1
2 Prodom : D2X2F8, H2YJH1
2 Pfam : D2X2F8, H2YJH1
2 PIRSF : D2X2F8, H2YJH1
2 SUPERFAM : D2X2F8, H2YJH1
2 QuickSwissBlast : D2X2F8, H2YJH1
 
Sequence
Graphical view for this peptide sequence: ciosa-d2x2f8
Colored MSA for Neuroligin (raw)
MFVFIFAIFLLNDITVVSTSPSRNQFQRIFRSPDWTNIMKRDAYSRIQNQ
QSNDFSEEVLDQRIEAIKFVQIRTNSGRVRGHKTVLENQSIKPVVKFLGI
PYAAPPVGKFRWKKTEKPKPWDGVRNASTFGPICPQARNGPLPAALLPVW
YRANHSLVQRMRMDEDCLYLNIYVPAKLYASGKLDLILPSLCLTLICRNL
CNPLPVMVHFHGYTYAEGSGNFYDGSVLASYGEVIVVTFNYRLGVLGFMS
TMESNSPGNYGLWDQVAALKWVSENIDRFGGDPNSVTVFGSGAGASCIGL
LMVSVQLDAYFQRAILQSGTALAPWSMVRNPRQQTLGLARAPSVNCYRES
SREMVECLKGKSWRDLISVAISTEPYDLAFSPVVDGQDMFLVDNPFNLME
KGEFLNYPVMIGVSPGDGFGYLRDRILYPSGKSFGSDLFDVVVAKFTDSF
YDDSEVPLEAIEKLVRFIYTDWADRENPMRLKSSLMELYTDRQFVEPAVR
TALHNTNYKNNAFFYTFYHHPGKDPNRSWIESALGEQDPFVFGAPLMGNS
AETLFPYNYTKDDIMISTAVMTYWTNFAKNGDPGKGKKQQTRFITEKANC
FENVVWPQYEEAGRQHLKISTSPEVGSHYRAQKVELWRSFLPSLSGVSRS
SIGDGVNPLKPPRAEPPTISPGTKNPNLATPKVSIFYSDTLTNHRSQPKP
STSETNGLSLQLNITLAVGFVLLFLNIIAFAVVSYHKEKDKYKIDVSTVK
T
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MFVFIFAIFLLNDITVVSTSPSRNQFQRIFRSPDWTNIMKRDAYSRIQNQ
QSNDFSEEVLDQRIEAIKFVQIRTNSGRVRGHKTVLENQSIKPVVKFLGI
PYAAPPVGKFRWKKTEKPKPWDGVRNASTFGPICPQARNGPLPAALLPVW
YRANHSLVQRMRMDEDCLYLNIYVPAKLYASGKLDLILPSLCLTLICRNL
CNPLPVMVHFHGYTYAEGSGNFYDGSVLASYGEVIVVTFNYRLGVLGFMS
TMESNSPGNYGLWDQVAALKWVSENIDRFGGDPNSVTVFGSGAGASCIGL
LMVSVQLDAYFQRAILQSGTALAPWSMVRNPRQQTLGLARAPSVNCYRES
SREMVECLKGKSWRDLISVAISTEPYDLAFSPVVDGQDMFLVDNPFNLME
KGEFLNYPVMIGVSPGDGFGYLRDRILYPSGKSFGSDLFDVVVAKFTDSF
YDDSEVPLEAIEKLVRFIYTDWADRENPMRLKSSLMELYTDRQFVEPAVR
TALHNTNYKNNAFFYTFYHHPGKDPNRSWIESALGEQDPFVFGAPLMGNS
AETLFPYNYTKDDIMISTAVMTYWTNFAKNGDPGKGKKQQTRFITEKANC
FENVVWPQYEEAGRQHLKISTSPEVGSHYRAQKVELWRSFLPSLSGVSRS
SIGDGVNPLKPPRAEPPTISPGTKNPNLATPKVSIFYSDTLTNHRSQPKP
STSETNGLSLQLNITLAVGFVLLFLNIIAFAVVSYHKEKDKYKIDVSTVK
T

no DNA




Reference
    Title: Characterization of the neuroligin gene family expression and evolution in zebrafish
    Rissone A, Sangiorgio L, Monopoli M, Beltrame M, Zucchi I, Bussolino F, Arese M, Cotelli F
    Ref: Developmental Dynamics, 239:688, 2010 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
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