gasac-nlgn4

 
Gasterosteus aculeatus (Three-spined stickleback) Neuroligin 4

Relationship
Family Neuroligin
Block C
Gasterosteus aculeatus position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Craniata: N E > Vertebrata: N E > Gnathostomata: N E > Teleostomi: N E > Euteleostomi: N E > Actinopterygii: N E > Actinopteri: N E > Neopterygii: N E > Teleostei: N E > Osteoglossocephalai: N E > Clupeocephala: N E > Euteleosteomorpha: N E > Neoteleostei: N E > Eurypterygia: N E > Ctenosquamata: N E > Acanthomorphata: N E > Euacanthomorphacea: N E > Percomorphaceae: N E > Eupercaria: N E > Perciformes: N E > Cottioidei: N E > Gasterosteales: N E > Gasterosteidae: N E > Gasterosteus: N E > Gasterosteus aculeatus: N E

Molecular evidence
Database
No mutation
No structure
No kinetic



1 Genbank : GQ489226
1 UniProt : D2X2J5
1 UniProtTrembl : D2X2J5
1 Interpro : D2X2J5
1 Prodom : D2X2J5
1 Pfam : D2X2J5
1 PIRSF : D2X2J5
1 SUPERFAM : D2X2J5
1 QuickSwissBlast : D2X2J5
 
Sequence
Graphical view for this peptide sequence: gasac-nlgn4
Colored MSA for Neuroligin (raw)
MSAPRSPSCMCRSMTKVNLLLWVGLASICLASVQSQLHPVVTTNYGKLRG
VKVTLPNEILGPVEQYLGIPYALAPTGERRFQPPEPPMSWPGIRNATQFA
PVCPQFLEDRFLLNDMLPVWFTANLDTVVNYVQEQSEDCLYLNIYVPTED
DIHDENGLKPVMVYIHGGSYMEGTGNMIDGSILASYGNVIVITINYRLGI
LGFLSTGDQAAKGNYGLLDQIQALRWIKENIQAFKGDPKRVTIFGSGAGA
SCVSLLTLSHYSEDLFQKAIIQSGTALSSWAVNYQPAKYTRALAEKVGCN
MLDTIDLVECLQNKNYKELIEQYITPAKYHIAFGPVIDGDVIPDDPQILM
EQGEFLNYDIMLGVNQGEGFKFVDGIVDSEDGVSANDFDFAVSDFVDHLY
GYPEGKDTLRETIKFMYTDWADKENPETRRKTLVALFTDHQWVAPAVATA
DLHAQYGSPTYFYAFYHHCQSDMKPSWADSAHGDEVPYVFGIPMIGPTDL
FNCNFSKNDVMLSAVVMTYWTNFAKTGDPNQPVPQDTKFIHTKPNRFEEV
AWTKYNPKDQLYLHIGLKPRVRDHYRATKVAFWLELVPHLHNINEFFQYV
STTTKIPPQDTTPYPYTKRFPGKNTWPSTTRHPGVPPANTKQTTDQRKSG
DLTDESTVVIETKRDYSTELSVTIAVGASLLFLNILAFAALYYKKDKRRH
ESNRRVLTPQRNSVAANTPSATNDVAHLQSEELMSLQMKQQQLELEHHHE
CESLQTHDTLRLTCPPDYTLTLRRSPDDIPLMTPSTITMIPNSLAGMQPL
HNFNTFGGSQNSTNLPHGHSTTRV
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MSAPRSPSCMCRSMTKVNLLLWVGLASICLASVQSQLHPVVTTNYGKLRG
VKVTLPNEILGPVEQYLGIPYALAPTGERRFQPPEPPMSWPGIRNATQFA
PVCPQFLEDRFLLNDMLPVWFTANLDTVVNYVQEQSEDCLYLNIYVPTED
DIHDENGLKPVMVYIHGGSYMEGTGNMIDGSILASYGNVIVITINYRLGI
LGFLSTGDQAAKGNYGLLDQIQALRWIKENIQAFKGDPKRVTIFGSGAGA
SCVSLLTLSHYSEDLFQKAIIQSGTALSSWAVNYQPAKYTRALAEKVGCN
MLDTIDLVECLQNKNYKELIEQYITPAKYHIAFGPVIDGDVIPDDPQILM
EQGEFLNYDIMLGVNQGEGFKFVDGIVDSEDGVSANDFDFAVSDFVDHLY
GYPEGKDTLRETIKFMYTDWADKENPETRRKTLVALFTDHQWVAPAVATA
DLHAQYGSPTYFYAFYHHCQSDMKPSWADSAHGDEVPYVFGIPMIGPTDL
FNCNFSKNDVMLSAVVMTYWTNFAKTGDPNQPVPQDTKFIHTKPNRFEEV
AWTKYNPKDQLYLHIGLKPRVRDHYRATKVAFWLELVPHLHNINEFFQYV
STTTKIPPQDTTPYPYTKRFPGKNTWPSTTRHPGVPPANTKQTTDQRKSG
DLTDESTVVIETKRDYSTELSVTIAVGASLLFLNILAFAALYYKKDKRRH
ESNRRVLTPQRNSVAANTPSATNDVAHLQSEELMSLQMKQQQLELEHHHE
CESLQTHDTLRLTCPPDYTLTLRRSPDDIPLMTPSTITMIPNSLAGMQPL
HNFNTFGGSQNSTNLPHGHSTTRV

no DNA




Reference
    Title: Characterization of the neuroligin gene family expression and evolution in zebrafish
    Rissone A, Sangiorgio L, Monopoli M, Beltrame M, Zucchi I, Bussolino F, Arese M, Cotelli F
    Ref: Developmental Dynamics, 239:688, 2010 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
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