Gene_Locus Report

Biblio print

Add to basket

Go to basket

Tree Display

AceDB Schema

XML Display

Feedback

Gene_locus Report for: orysj-q0jga1

Oryza sativa subsp. japonica subsp. indica (Rice) Os01g0934600 protein

Relationship
Family|Hydroxynitrile_lyase
Block| X
Position in NCBI Life Tree|Oryza sativa subsp. japonica
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > Liliopsida: N E > Petrosaviidae: N E > commelinids: N E > Poales: N E > Poaceae: N E > BOP clade: N E > Oryzoideae: N E > Oryzeae: N E > Oryzinae: N E > Oryza: N E > Oryza sativa: N E > Oryza sativa Japonica Group: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : AP008207
1 UniProt : Q0JGA1
1 UniProt : Q0JGA1
1 Interpro : Q0JGA1
1 Prodom : Q0JGA1
1 Pfam : Q0JGA1
1 PIRSF : Q0JGA1
1 SUPERFAM : Q0JGA1
Sequence
Graphical view for this peptide sequence: orysj-q0jga1
Colored MSA for Hydroxynitrile_lyase (raw)
MEGSGGGSSKHFIPVHGLCHGAWCWYKVVTMLRSEGHRVTALDLAASGVH
PARIDESRPLLDTVAVAPAGERLILVGHSFGGLSIALAMERFPDKIAVAV
FAASSMPCVGKHMGIVRELMRERAPKGLLMDSKMIPMNNKRGPGTADLTL
AKLLMTPGSQFQDDPMMKDDKLLTSANYGSVKRVCLIGMGDDIKELHRYL
ITLSPGTEVEEIAGADHNIMCSKPRELCDLLAKISSKYD
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MEGSGGGSSKHFIPVHGLCHGAWCWYKVVTMLRSEGHRVTALDLAASGVH
PARIDESRPLLDTVAVAPAGERLILVGHSFGGLSIALAMERFPDKIAVAV
FAASSMPCVGKHMGIVRELMRERAPKGLLMDSKMIPMNNKRGPGTADLTL
AKLLMTPGSQFQDDPMMKDDKLLTSANYGSVKRVCLIGMGDDIKELHRYL
ITLSPGTEVEEIAGADHNIMCSKPRELCDLLAKISSKYD


References
1 more
    Title: Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana
    Itoh T, Tanaka T, Barrero RA, Yamasaki C, Fujii Y, Hilton PB, Antonio BA, Aono H, Apweiler R and Sasaki T <85 more author(s)>
    Ref: Genome Res, 17:175, 2007 : PubMed

            

    Title: The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information
    Ohyanagi H, Tanaka T, Sakai H, Shigemoto Y, Yamaguchi K, Habara T, Fujii Y, Antonio BA, Nagamura Y and Sasaki T <4 more author(s)>
    Ref: Nucleic Acids Research, 34:D741, 2006 : PubMed

            

    Title: The map-based sequence of the rice genome.
    Matsumo T, Sasaki T
    Ref: Nature, 436:793, 2005 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
webmaster

Acknowledgements and disclaimer