xentr-d2x2k7

 
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis) Neuroligin 4

Relationship
Family Neuroligin
Block C
Xenopus tropicalis position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Craniata: N E > Vertebrata: N E > Gnathostomata: N E > Teleostomi: N E > Euteleostomi: N E > Sarcopterygii: N E > Dipnotetrapodomorpha: N E > Tetrapoda: N E > Amphibia: N E > Batrachia: N E > Anura: N E > Pipoidea: N E > Pipidae: N E > Xenopodinae: N E > Xenopus [genus]: N E > Silurana: N E > Xenopus tropicalis: N E

Molecular evidence
Database
No mutation
No structure
No kinetic



1 Genbank : GQ489238
1 UniProt : D2X2K7
1 UniProtTrembl : D2X2K7
1 Interpro : D2X2K7
1 Prodom : D2X2K7
1 Pfam : D2X2K7
1 PIRSF : D2X2K7
1 SUPERFAM : D2X2K7
1 QuickSwissBlast : D2X2K7
 
Sequence
Graphical view for this peptide sequence: xentr-d2x2k7
Colored MSA for Neuroligin (raw)
MSRPNGLLWLPLIFTPVCVLVNSNLLLWIAALAVRFTIVDCQAQHPIVPT
NYGKIRGTRTPLPIEILGPVEQYLGVPYASPPTGERRFQPPEPPSSWTGI
KNATQFAPVCPQFLDERSLLNDMLPIWFTANLDTVVSYVQDQNEDCLYLN
IYVPTEDDIHDPNNKKPVMVYIHGGSYMEGTGNMIDGSILASHGNVIVIT
VNYRLGVLGFLSTGDQAAKGNYGLLDQIQALRWIEENIGAFGGDPKRVTI
FGSGAGASCVSLLTLSHYSEGLFQKAIIQSGTALSSWAVNYQPAKYTRIL
ADKVGCDMLDTIDLVECLRDKNYKELIQQSITPATYHIAFGPVIDGDVIP
DDPQILMEQGEFLNYDIMLGVNQGEGLKFVDGMVDNEDGVSLSDFDFSVS
NFVDNLYGYPEGKDTLRETIKFMYTDWADKENPETRRKTLVALFTDHQWV
APAVATADLHARYGSPTYFYAFYHHCQSEMKPTWADSAHGDEVPYVFGIP
MIGPTELFNCNFSKNDVMLSAVVMTYWTNFAKTGDPNKPVPQDTKFIHTK
PNRFEEVAWSKYDPKDQLYLHIGLKPRVRDHYRATKVAFWLELVPHLHNL
NEIFQYVSTTTKVPPPDMTSYPHVTRRPPLKPRITTKRPAMTPANNAKET
QKNVLGENTIITEDKRDYSTELSVTIAVGASLLFLNILAFAALYYKKDKR
RHETHRRPSPQRNTTNDIAHIQNEEIMSLQMKQLEHDHECEALQAHDTLR
LTCPPDYTLTLRRSPDDIPLMTPNTITMIPNTLTGMQPLHTFNTFSGGQN
STNLPHGHSTTRV
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MSRPNGLLWLPLIFTPVCVLVNSNLLLWIAALAVRFTIVDCQAQHPIVPT
NYGKIRGTRTPLPIEILGPVEQYLGVPYASPPTGERRFQPPEPPSSWTGI
KNATQFAPVCPQFLDERSLLNDMLPIWFTANLDTVVSYVQDQNEDCLYLN
IYVPTEDDIHDPNNKKPVMVYIHGGSYMEGTGNMIDGSILASHGNVIVIT
VNYRLGVLGFLSTGDQAAKGNYGLLDQIQALRWIEENIGAFGGDPKRVTI
FGSGAGASCVSLLTLSHYSEGLFQKAIIQSGTALSSWAVNYQPAKYTRIL
ADKVGCDMLDTIDLVECLRDKNYKELIQQSITPATYHIAFGPVIDGDVIP
DDPQILMEQGEFLNYDIMLGVNQGEGLKFVDGMVDNEDGVSLSDFDFSVS
NFVDNLYGYPEGKDTLRETIKFMYTDWADKENPETRRKTLVALFTDHQWV
APAVATADLHARYGSPTYFYAFYHHCQSEMKPTWADSAHGDEVPYVFGIP
MIGPTELFNCNFSKNDVMLSAVVMTYWTNFAKTGDPNKPVPQDTKFIHTK
PNRFEEVAWSKYDPKDQLYLHIGLKPRVRDHYRATKVAFWLELVPHLHNL
NEIFQYVSTTTKVPPPDMTSYPHVTRRPPLKPRITTKRPAMTPANNAKET
QKNVLGENTIITEDKRDYSTELSVTIAVGASLLFLNILAFAALYYKKDKR
RHETHRRPSPQRNTTNDIAHIQNEEIMSLQMKQLEHDHECEALQAHDTLR
LTCPPDYTLTLRRSPDDIPLMTPNTITMIPNTLTGMQPLHTFNTFSGGQN
STNLPHGHSTTRV

no DNA




Reference
    Title: Characterization of the neuroligin gene family expression and evolution in zebrafish
    Rissone A, Sangiorgio L, Monopoli M, Beltrame M, Zucchi I, Bussolino F, Arese M, Cotelli F
    Ref: Developmental Dynamics, 239:688, 2010 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
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