Chan_2010_Nat.Biotechnol_28_951

Reference

Title : Draft genome sequence of the oilseed species Ricinus communis - Chan_2010_Nat.Biotechnol_28_951
Author(s) : Chan AP , Crabtree J , Zhao Q , Lorenzi H , Orvis J , Puiu D , Melake-Berhan A , Jones KM , Redman J , Chen G , Cahoon EB , Gedil M , Stanke M , Haas BJ , Wortman JR , Fraser-Liggett CM , Ravel J , Rabinowicz PD
Ref : Nat Biotechnol , 28 :951 , 2010
Abstract :

Castor bean (Ricinus communis) is an oilseed crop that belongs to the spurge (Euphorbiaceae) family, which comprises approximately 6,300 species that include cassava (Manihot esculenta), rubber tree (Hevea brasiliensis) and physic nut (Jatropha curcas). It is primarily of economic interest as a source of castor oil, used for the production of high-quality lubricants because of its high proportion of the unusual fatty acid ricinoleic acid. However, castor bean genomics is also relevant to biosecurity as the seeds contain high levels of ricin, a highly toxic, ribosome-inactivating protein. Here we report the draft genome sequence of castor bean (4.6-fold coverage), the first for a member of the Euphorbiaceae. Whereas most of the key genes involved in oil synthesis and turnover are single copy, the number of members of the ricin gene family is larger than previously thought. Comparative genomics analysis suggests the presence of an ancient hexaploidization event that is conserved across the dicotyledonous lineage.

PubMedSearch : Chan_2010_Nat.Biotechnol_28_951
PubMedID: 20729833
Gene_locus related to this paper: ricco-b9r7h7 , ricco-b9re31 , ricco-b9rgi7 , ricco-b9riy7 , ricco-b9rlg6 , ricco-b9rm64 , ricco-b9rsg5 , ricco-b9rtk6 , ricco-b9rtt3 , ricco-b9ry83 , ricco-b9s8p2 , ricco-b9s817 , ricco-b9sby7 , ricco-b9scn1 , ricco-b9scn2 , ricco-b9scn3 , ricco-b9scn5 , ricco-b9ssj7 , ricco-b9ssj8 , ricco-b9sx01 , ricco-b9szu0 , ricco-b9t4l4 , ricco-b9t5x2 , ricco-b9tb84 , ricco-b9rkb0 , ricco-b9rru1 , ricco-b9rdy5 , ricco-b9tey4 , ricco-b9sfw5 , ricco-b9sjw6 , ricco-b9shs6 , ricco-b9rsl2 , ricco-b9r7f8 , ricco-b9rne4 , ricco-b9r8z8 , ricco-b9rf65 , ricco-b9rjk8 , ricco-b9sip5 , ricco-b9t3r4

Related information

Gene_locus ricco-b9r7h7    ricco-b9re31    ricco-b9rgi7    ricco-b9riy7    ricco-b9rlg6    ricco-b9rm64    ricco-b9rsg5    ricco-b9rtk6    ricco-b9rtt3    ricco-b9ry83    ricco-b9s8p2    ricco-b9s817    ricco-b9sby7    ricco-b9scn1    ricco-b9scn2    ricco-b9scn3    ricco-b9scn5    ricco-b9ssj7    ricco-b9ssj8    ricco-b9sx01    ricco-b9szu0    ricco-b9t4l4    ricco-b9t5x2    ricco-b9tb84    ricco-b9rkb0    ricco-b9rru1    ricco-b9rdy5    ricco-b9tey4    ricco-b9sfw5    ricco-b9sjw6    ricco-b9shs6    ricco-b9rsl2    ricco-b9r7f8    ricco-b9rne4    ricco-b9r8z8    ricco-b9rf65    ricco-b9rjk8    ricco-b9sip5    ricco-b9t3r4
Gene_locus_frgt ricco-b9rcr1    ricco-b9rzi9    ricco-b9s4m7    ricco-b9s4m8    ricco-b9s4m9    ricco-b9s818    ricco-b9ssj6    ricco-b9sx74    ricco-b9t7g4    ricco-b9t8i1    ricco-b9tai5    ricco-b9tnx6    ricco-b9rer6    ricco-b9tm21    ricco-b9rk31    ricco-b9rp54

Citations formats

Chan AP, Crabtree J, Zhao Q, Lorenzi H, Orvis J, Puiu D, Melake-Berhan A, Jones KM, Redman J, Chen G, Cahoon EB, Gedil M, Stanke M, Haas BJ, Wortman JR, Fraser-Liggett CM, Ravel J, Rabinowicz PD (2010)
Draft genome sequence of the oilseed species Ricinus communis
Nat Biotechnol 28 :951

Chan AP, Crabtree J, Zhao Q, Lorenzi H, Orvis J, Puiu D, Melake-Berhan A, Jones KM, Redman J, Chen G, Cahoon EB, Gedil M, Stanke M, Haas BJ, Wortman JR, Fraser-Liggett CM, Ravel J, Rabinowicz PD (2010)
Nat Biotechnol 28 :951