Chang_2011_Stand.Genomic.Sci_5_97

Reference

Title : Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21) - Chang_2011_Stand.Genomic.Sci_5_97
Author(s) : Chang YJ , Land M , Hauser L , Chertkov O , Del Rio TG , Nolan M , Copeland A , Tice H , Cheng JF , Lucas S , Han C , Goodwin L , Pitluck S , Ivanova N , Ovchinikova G , Pati A , Chen A , Palaniappan K , Mavromatis K , Liolios K , Brettin T , Fiebig A , Rohde M , Abt B , Goker M , Detter JC , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A
Ref : Stand Genomic Sci , 5 :97 , 2011
Abstract :

Ktedonobacter racemifer corrig. Cavaletti et al. 2007 is the type species of the genus Ktedonobacter, which in turn is the type genus of the family Ktedonobacteraceae, the type family of the order Ktedonobacterales within the class Ktedonobacteria in the phylum 'Chloroflexi'. Although K. racemifer shares some morphological features with the actinobacteria, it is of special interest because it was the first cultivated representative of a deep branching unclassified lineage of otherwise uncultivated environmental phylotypes tentatively located within the phylum 'Chloroflexi'. The aerobic, filamentous, non-motile, spore-forming Gram-positive heterotroph was isolated from soil in Italy. The 13,661,586 bp long non-contiguous finished genome consists of ten contigs and is the first reported genome sequence from a member of the class Ktedonobacteria. With its 11,453 protein-coding and 87 RNA genes, it is the largest prokaryotic genome reported so far. It comprises a large number of over-represented COGs, particularly genes associated with transposons, causing the genetic redundancy within the genome being considerably larger than expected by chance. This work is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

PubMedSearch : Chang_2011_Stand.Genomic.Sci_5_97
PubMedID: 22180814
Gene_locus related to this paper: 9chlr-d6ttv1 , 9chlr-d6thn5 , 9chlr-d6tk73 , 9chlr-d6tzq4 , 9chlr-d6tri7 , 9chlr-d6tuz4 , 9chlr-d6tri9 , 9chlr-d6tsy5 , 9chlr-d6u5k6 , 9chlr-d6u6a8 , 9chlr-d6tye6 , 9chlr-d6tpj9

Related information

Gene_locus 9chlr-d6ttv1    9chlr-d6thn5    9chlr-d6tk73    9chlr-d6tzq4    9chlr-d6tri7    9chlr-d6tuz4    9chlr-d6tri9    9chlr-d6tsy5    9chlr-d6u5k6    9chlr-d6u6a8    9chlr-d6tye6    9chlr-d6tpj9
Gene_locus_frgt 9chlr-d6ti79

Citations formats

Chang YJ, Land M, Hauser L, Chertkov O, Del Rio TG, Nolan M, Copeland A, Tice H, Cheng JF, Lucas S, Han C, Goodwin L, Pitluck S, Ivanova N, Ovchinikova G, Pati A, Chen A, Palaniappan K, Mavromatis K, Liolios K, Brettin T, Fiebig A, Rohde M, Abt B, Goker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A (2011)
Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21)
Stand Genomic Sci 5 :97

Chang YJ, Land M, Hauser L, Chertkov O, Del Rio TG, Nolan M, Copeland A, Tice H, Cheng JF, Lucas S, Han C, Goodwin L, Pitluck S, Ivanova N, Ovchinikova G, Pati A, Chen A, Palaniappan K, Mavromatis K, Liolios K, Brettin T, Fiebig A, Rohde M, Abt B, Goker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A (2011)
Stand Genomic Sci 5 :97