Lapidus A

References (174)

Title : Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus - de Vries_2017_Genome.Biol_18_28
Author(s) : de Vries RP , Riley R , Wiebenga A , Aguilar-Osorio G , Amillis S , Uchima CA , Anderluh G , Asadollahi M , Askin M , Barry K , Battaglia E , Bayram O , Benocci T , Braus-Stromeyer SA , Caldana C , Canovas D , Cerqueira GC , Chen F , Chen W , Choi C , Clum A , Dos Santos RA , Damasio AR , Diallinas G , Emri T , Fekete E , Flipphi M , Freyberg S , Gallo A , Gournas C , Habgood R , Hainaut M , Harispe ML , Henrissat B , Hilden KS , Hope R , Hossain A , Karabika E , Karaffa L , Karanyi Z , Krasevec N , Kuo A , Kusch H , LaButti K , Lagendijk EL , Lapidus A , Levasseur A , Lindquist E , Lipzen A , Logrieco AF , Maccabe A , Makela MR , Malavazi I , Melin P , Meyer V , Mielnichuk N , Miskei M , Molnar AP , Mule G , Ngan CY , Orejas M , Orosz E , Ouedraogo JP , Overkamp KM , Park HS , Perrone G , Piumi F , Punt PJ , Ram AF , Ramon A , Rauscher S , Record E , Riano-Pachon DM , Robert V , Rohrig J , Ruller R , Salamov A , Salih NS , Samson RA , Sandor E , Sanguinetti M , Schutze T , Sepcic K , Shelest E , Sherlock G , Sophianopoulou V , Squina FM , Sun H , Susca A , Todd RB , Tsang A , Unkles SE , van de Wiele N , van Rossen-Uffink D , Oliveira JV , Vesth TC , Visser J , Yu JH , Zhou M , Andersen MR , Archer DB , Baker SE , Benoit I , Brakhage AA , Braus GH , Fischer R , Frisvad JC , Goldman GH , Houbraken J , Oakley B , Pocsi I , Scazzocchio C , Seiboth B , vanKuyk PA , Wortman J , Dyer PS , Grigoriev IV
Ref : Genome Biol , 18 :28 , 2017
PubMedID: 28196534
Gene_locus related to this paper: asptu-a0a1l9nhd0 , aspve-a0a1l9pxx8 , aspve-a0a1l9q4m3 , aspwe-a0a1l9s133 , 9euro-a0a1l9t3v9 , aspwe-a0a1l9rcx6 , aspna-g3y5a6 , aspgl-a0a1l9v4d3 , 9euro-a0a1l9sa36 , aspsb-a0a319eji6 , aspve-a0a1l9px96 , 9euro-a0a1l9tay1 , aspgl-a0a1l9vbc0 , aspc5-a0a1r3rh65 , 9euro-a0a2v5i956 , aspwe-a0a1l9rpp6 , aspna-g3xpw9 , aspve-a0a1l9plv1 , 9euro-a0a1l9tk47 , aspve-a0a1l9pde9 , aspve-a0a1l9pz72 , aspwe-a0a1l9rde6 , 9euro-a0a1l9tdb5 , aspkw-g7xq95 , aspbc-a0a1l9u6h4 , aspbc-a0a1l9u2l4 , asptc-a0a1l9mx83 , aspgl-a0a1l9ve90 , aspve-a0a1l9pvz9 , 9euro-a0a1l9tdh3 , aspc5-a0a1r3rmn9 , aspwe-a0a1l9rlq2 , asptc-a0a1l9nby7 , aspng-a0a100i8t9 , aspc5-a0a1r3rem6 , aspbc-a0a1l9uy89 , aspa1-anee , aspa1-aneh , aspa1-acrc , aspbc-alba , aspa1-acui

Title : Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds - Hwang_2016_Genome.Announc_4_e01226
Author(s) : Hwang C , Copeland A , Lucas S , Lapidus A , Barry K , Detter JC , Glavina Del Rio T , Hammon N , Israni S , Dalin E , Tice H , Pitluck S , Chertkov O , Brettin T , Bruce D , Han C , Schmutz J , Larimer F , Land ML , Hauser L , Kyrpides N , Mikhailova N , Ye Q , Zhou J , Richardson P , Fields MW
Ref : Genome Announc , 4 : , 2016
PubMedID: 27811105
Gene_locus related to this paper: alkmq-a6tu78

Title : Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34 - Anderson_2016_Stand.Genomic.Sci_11_70
Author(s) : Anderson IJ , DasSarma P , Lucas S , Copeland A , Lapidus A , Del Rio TG , Tice H , Dalin E , Bruce DC , Goodwin L , Pitluck S , Sims D , Brettin TS , Detter JC , Han CS , Larimer F , Hauser L , Land M , Ivanova N , Richardson P , Cavicchioli R , DasSarma S , Woese CR , Kyrpides NC
Ref : Stand Genomic Sci , 11 :70 , 2016
PubMedID: 27617060
Gene_locus related to this paper: hallt-metxa

Title : Complete genome sequence of Coriobacterium glomerans type strain (PW2(T)) from the midgut of Pyrrhocoris apterus L. (red soldier bug) - Stackebrandt_2013_Stand.Genomic.Sci_8_15
Author(s) : Stackebrandt E , Zeytun A , Lapidus A , Nolan M , Lucas S , Hammon N , Deshpande S , Cheng JF , Tapia R , Goodwin LA , Pitluck S , Liolios K , Pagani I , Ivanova N , Mavromatis K , Mikhailova N , Huntemann M , Pati A , Chen A , Palaniappan K , Chang YJ , Land M , Hauser L , Rohde M , Pukall R , Goker M , Detter JC , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 8 :15 , 2013
PubMedID: 23961308
Gene_locus related to this paper: corgp-f2n8w7

Title : Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692(T)) from the alkaline Lake Magadi in the East African Rift - Liolos_2013_Stand.Genomic.Sci_8_165
Author(s) : Liolos K , Abt B , Scheuner C , Teshima H , Held B , Lapidus A , Nolan M , Lucas S , Deshpande S , Cheng JF , Tapia R , Goodwin LA , Pitluck S , Pagani I , Ivanova N , Mavromatis K , Mikhailova N , Huntemann M , Pati A , Chen A , Palaniappan K , Land M , Rohde M , Tindall BJ , Detter JC , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Woyke T , Klenk HP , Kyrpides NC
Ref : Stand Genomic Sci , 8 :165 , 2013
PubMedID: 23991249
Gene_locus related to this paper: spiaz-h9uj53

Title : Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1(T)), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema - Abt_2013_Stand.Genomic.Sci_8_88
Author(s) : Abt B , Goker M , Scheuner C , Han C , Lu M , Misra M , Lapidus A , Nolan M , Lucas S , Hammon N , Deshpande S , Cheng JF , Tapia R , Goodwin LA , Pitluck S , Liolios K , Pagani I , Ivanova N , Mavromatis K , Mikhailova N , Huntemann M , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Jeffries CD , Rohde M , Spring S , Gronow S , Detter JC , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Woyke T , Klenk HP
Ref : Stand Genomic Sci , 8 :88 , 2013
PubMedID: 23961314
Gene_locus related to this paper: trech-f8f1l1

Title : Genome Sequence of the Obligate Gammaproteobacterial Methanotroph Methylomicrobium album Strain BG8 - Kits_2013_Genome.Announc_1_e0017013
Author(s) : Kits KD , Kalyuzhnaya MG , Klotz MG , Jetten MS , Op den Camp HJ , Vuilleumier S , Bringel F , DiSpirito AA , Murrell JC , Bruce D , Cheng JF , Copeland A , Goodwin L , Hauser L , Lajus A , Land ML , Lapidus A , Lucas S , Medigue C , Pitluck S , Woyke T , Zeytun A , Stein LY
Ref : Genome Announc , 1 :e0017013 , 2013
PubMedID: 23580712

Title : The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction - Padamsee_2012_Fungal.Genet.Biol_49_217
Author(s) : Padamsee M , Kumar TK , Riley R , Binder M , Boyd A , Calvo AM , Furukawa K , Hesse C , Hohmann S , James TY , LaButti K , Lapidus A , Lindquist E , Lucas S , Miller K , Shantappa S , Grigoriev IV , Hibbett DS , McLaughlin DJ , Spatafora JW , Aime MC
Ref : Fungal Genet Biol , 49 :217 , 2012
PubMedID: 22326418
Gene_locus related to this paper: walsc-i4y6w1 , walmc-i4y5m3

Title : Complete genome sequence of Polynucleobacter necessarius subsp. asymbioticus type strain (QLW-P1DMWA-1(T)) - Meincke_2012_Stand.Genomic.Sci_6_74
Author(s) : Meincke L , Copeland A , Lapidus A , Lucas S , Berry KW , Del Rio TG , Hammon N , Dalin E , Tice H , Pitluck S , Richardson P , Bruce D , Goodwin L , Han C , Tapia R , Detter JC , Schmutz J , Brettin T , Larimer F , Land M , Hauser L , Kyrpides NC , Ivanova N , Goker M , Woyke T , Wu QL , Pockl M , Hahn MW , Klenk HP
Ref : Stand Genomic Sci , 6 :74 , 2012
PubMedID: 22675600
Gene_locus related to this paper: polsq-a4sxg1 , polsq-a4sxf4

Title : Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park - Mead_2012_Stand.Genomic.Sci_6_381
Author(s) : Mead DA , Lucas S , Copeland A , Lapidus A , Cheng JF , Bruce DC , Goodwin LA , Pitluck S , Chertkov O , Zhang X , Detter JC , Han CS , Tapia R , Land M , Hauser LJ , Chang YJ , Kyrpides NC , Ivanova NN , Ovchinnikova G , Woyke T , Brumm C , Hochstein R , Schoenfeld T , Brumm P
Ref : Stand Genomic Sci , 6 :381 , 2012
PubMedID: 23408395
Gene_locus related to this paper: geos4-d3efm9

Title : Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093(T)) - Kappler_2012_Stand.Genomic.Sci_7_44
Author(s) : Kappler U , Davenport K , Beatson S , Lucas S , Lapidus A , Copeland A , Berry KW , Glavina Del Rio T , Hammon N , Dalin E , Tice H , Pitluck S , Richardson P , Bruce D , Goodwin LA , Han C , Tapia R , Detter JC , Chang YJ , Jeffries CD , Land M , Hauser L , Kyrpides NC , Goker M , Ivanova N , Klenk HP , Woyke T
Ref : Stand Genomic Sci , 7 :44 , 2012
PubMedID: 23450099
Gene_locus related to this paper: stand-d7a8r1

Title : Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize - Suzuki_2012_BMC.Genomics_13_444
Author(s) : Suzuki H , MacDonald J , Syed K , Salamov A , Hori C , Aerts A , Henrissat B , Wiebenga A , vanKuyk PA , Barry K , Lindquist E , LaButti K , Lapidus A , Lucas S , Coutinho P , Gong Y , Samejima M , Mahadevan R , Abou-Zaid M , de Vries RP , Igarashi K , Yadav JS , Grigoriev IV , Master ER
Ref : BMC Genomics , 13 :444 , 2012
PubMedID: 22937793
Gene_locus related to this paper: phacs-k5whx2 , phacs-k5v2s8 , phacs-k5v5r2 , phacs-k5vyk5 , phacs-k5vzf8 , phacs-k5wbu9 , phacs-k5wc10 , phacs-k5wpw0 , phacs-k5wzn6 , phacs-k5x1t8 , phacs-k5x5g6 , phacs-k5x5p4

Title : Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T)) - Anderson_2012_Stand.Genomic.Sci_6_174
Author(s) : Anderson I , Held B , Lapidus A , Nolan M , Lucas S , Tice H , Del Rio TG , Cheng JF , Han C , Tapia R , Goodwin LA , Pitluck S , Liolios K , Mavromatis K , Pagani I , Ivanova N , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Brambilla EM , Rohde M , Spring S , Goker M , Detter JC , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC
Ref : Stand Genomic Sci , 6 :174 , 2012
PubMedID: 22768361
Gene_locus related to this paper: 9bact-h1nzy5

Title : Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1) - Mavromatis_2012_Stand.Genomic.Sci_6_210
Author(s) : Mavromatis K , Chertkov O , Lapidus A , Nolan M , Lucas S , Tice H , Del Rio TG , Cheng JF , Han C , Tapia R , Bruce D , Goodwin LA , Pitluck S , Huntemann M , Liolios K , Pagani I , Ivanova N , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Brambilla EM , Rohde M , Spring S , Goker M , Detter JC , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Woyke T
Ref : Stand Genomic Sci , 6 :210 , 2012
PubMedID: 22768364
Gene_locus related to this paper: sapgl-h6kz52 , 9bact-j0p3n9

Title : The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaptation to different hosts and lifestyles but also signatures of common ancestry - de Wit_2012_PLoS.Genet_8_E1003088
Author(s) : de Wit PJ , van der Burgt A , Okmen B , Stergiopoulos I , Abd-Elsalam KA , Aerts AL , Bahkali AH , Beenen HG , Chettri P , Cox MP , Datema E , de Vries RP , Dhillon B , Ganley AR , Griffiths SA , Guo Y , Hamelin RC , Henrissat B , Kabir MS , Jashni MK , Kema G , Klaubauf S , Lapidus A , Levasseur A , Lindquist E , Mehrabi R , Ohm RA , Owen TJ , Salamov A , Schwelm A , Schijlen E , Sun H , van den Burg HA , van Ham RC , Zhang S , Goodwin SB , Grigoriev IV , Collemare J , Bradshaw RE
Ref : PLoS Genet , 8 :e1003088 , 2012
PubMedID: 23209441
Gene_locus related to this paper: mycpj-q30dw8 , mycp1-n1pnd6 , mycp1-n1per0 , mycp1-n1pg49 , mycp1-n1pwj1 , mycp1-n1pcl8 , mycp1-m2y2b1 , mycp1-n1pwu7 , mycp1-n1ppa8 , mycp1-m2yk59 , mycp1-n1pps5 , mycp1-n1pw13 , mycp1-n1pe19 , mycp1-m2xhl1 , mycp1-n1pnh6 , mycp1-n1psn5 , mycp1-n1puh9 , mycp1-n1phf7 , mycp1-m2y2h4 , mycp1-n1q523 , dotsn-n1q1b1 , dotsn-n1q415 , dotsn-est1

Title : Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis - Fernandez-Fueyo_2012_Proc.Natl.Acad.Sci.U.S.A_109_5458
Author(s) : Fernandez-Fueyo E , Ruiz-Duenas FJ , Ferreira P , Floudas D , Hibbett DS , Canessa P , Larrondo LF , James TY , Seelenfreund D , Lobos S , Polanco R , Tello M , Honda Y , Watanabe T , Ryu JS , Kubicek CP , Schmoll M , Gaskell J , Hammel KE , St John FJ , Vanden Wymelenberg A , Sabat G , Splinter BonDurant S , Syed K , Yadav JS , Doddapaneni H , Subramanian V , Lavin JL , Oguiza JA , Perez G , Pisabarro AG , Ramirez L , Santoyo F , Master E , Coutinho PM , Henrissat B , Lombard V , Magnuson JK , Kues U , Hori C , Igarashi K , Samejima M , Held BW , Barry KW , LaButti KM , Lapidus A , Lindquist EA , Lucas SM , Riley R , Salamov AA , Hoffmeister D , Schwenk D , Hadar Y , Yarden O , de Vries RP , Wiebenga A , Stenlid J , Eastwood D , Grigoriev IV , Berka RM , Blanchette RA , Kersten P , Martinez AT , Vicuna R , Cullen D
Ref : Proc Natl Acad Sci U S A , 109 :5458 , 2012
PubMedID: 22434909
Gene_locus related to this paper: cers8-m2r3x2 , cers8-m2qf37 , cers8-m2pcy7 , cers8-m2pcz3 , cers8-m2qn26 , cers8-m2r654 , cers8-m2r8g9 , cers8-m2ps90 , cers8-m2qn44 , cers8-m2q837 , cers8-m2pjy6 , cers8-m2r609 , cers8-m2qy35 , cers8-m2r1n1 , cers8-m2rl22 , cers8-m2qkx5 , cers8-m2qib7 , cers8-m2rgs8 , cers8-m2rlx6 , cers8-m2r4p3 , cers8-m2rf62 , cers8-m2qyx5 , cers8-m2pcz2 , cers8-m2rm22 , cers8-m2qwb7 , cers8-m2r9u3 , cers8-m2pp23 , cers8-m2r613 , cers8-m2rup8 , cers8-m2piv7 , cers8-m2rch3 , cers8-m2qvf7 , cers8-m2qvb7 , cers8-m2qvb2 , cers8-m2pip7 , cers8-m2rb73 , cers8-m2qgd3 , cers8-m2rcg8 , cers8-m2rb68

Title : Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282(T)) - Riedel_2012_Stand.Genomic.Sci_7_107
Author(s) : Riedel T , Held B , Nolan M , Lucas S , Lapidus A , Tice H , Del Rio TG , Cheng JF , Han C , Tapia R , Goodwin LA , Pitluck S , Liolios K , Mavromatis K , Pagani I , Ivanova N , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Rohde M , Tindall BJ , Detter JC , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Woyke T
Ref : Stand Genomic Sci , 7 :107 , 2012
PubMedID: 23450183
Gene_locus related to this paper: 9flao-h2bu38

Title : Complete genome sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T - Pester_2012_J.Bacteriol_194_6300
Author(s) : Pester M , Brambilla E , Alazard D , Rattei T , Weinmaier T , Han J , Lucas S , Lapidus A , Cheng JF , Goodwin L , Pitluck S , Peters L , Ovchinnikova G , Teshima H , Detter JC , Han CS , Tapia R , Land ML , Hauser L , Kyrpides NC , Ivanova NN , Pagani I , Huntmann M , Wei CL , Davenport KW , Daligault H , Chain PS , Chen A , Mavromatis K , Markowitz V , Szeto E , Mikhailova N , Pati A , Wagner M , Woyke T , Ollivier B , Klenk HP , Spring S , Loy A
Ref : Journal of Bacteriology , 194 :6300 , 2012
PubMedID: 23105050
Gene_locus related to this paper: desaj-i4dc82 , desmd-j7j1v2 , desod-g7wg97 , desaj-i4d5q8

Title : Complete genome sequence of the aerobic, heterotroph Marinithermus hydrothermalis type strain (T1(T)) from a deep-sea hydrothermal vent chimney - Copeland_2012_Stand.Genomic.Sci_6_21
Author(s) : Copeland A , Gu W , Yasawong M , Lapidus A , Lucas S , Deshpande S , Pagani I , Tapia R , Cheng JF , Goodwin LA , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Pan C , Brambilla EM , Rohde M , Tindall BJ , Sikorski J , Goker M , Detter JC , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Woyke T
Ref : Stand Genomic Sci , 6 :21 , 2012
PubMedID: 22675595
Gene_locus related to this paper: marht-f2nq80

Title : Complete genome sequence of Halopiger xanaduensis type strain (SH-6(T)) - Anderson_2012_Stand.Genomic.Sci_6_31
Author(s) : Anderson I , Tindall BJ , Rohde M , Lucas S , Han J , Lapidus A , Cheng JF , Goodwin L , Pitluck S , Peters L , Pati A , Mikhailova N , Pagani I , Teshima H , Han C , Tapia R , Land M , Woyke T , Klenk HP , Kyrpides N , Ivanova N
Ref : Stand Genomic Sci , 6 :31 , 2012
PubMedID: 22675596
Gene_locus related to this paper: halxs-f8dda6

Title : Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8(T)) - Anderson_2012_Stand.Genomic.Sci_7_210
Author(s) : Anderson I , Munk C , Lapidus A , Nolan M , Lucas S , Tice H , Del Rio TG , Cheng JF , Han C , Tapia R , Goodwin L , Pitluck S , Liolios K , Mavromatis K , Pagani I , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Rohde M , Tindall BJ , Goker M , Detter JC , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Ivanova N
Ref : Stand Genomic Sci , 7 :210 , 2012
PubMedID: 23408178

Title : Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15(T)) - Klenk_2012_Stand.Genomic.Sci_6_265
Author(s) : Klenk HP , Lu M , Lucas S , Lapidus A , Copeland A , Pitluck S , Goodwin LA , Han C , Tapia R , Brambilla EM , Potter G , Land M , Ivanova N , Rohde M , Goker M , Detter JC , Li WJ , Kyrpides NC , Woyke T
Ref : Stand Genomic Sci , 6 :265 , 2012
PubMedID: 22768369
Gene_locus related to this paper: 9pseu-h5x8w4 , 9pseu-h5x5e2 , 9pseu-h5xbd6 , 9pseu-h5x783

Title : Genome sequence of the soil bacterium Saccharomonospora azurea type strain (NA-128(T)) - Klenk_2012_Stand.Genomic.Sci_6_220
Author(s) : Klenk HP , Held B , Lucas S , Lapidus A , Copeland A , Hammon N , Pitluck S , Goodwin LA , Han C , Tapia R , Brambilla EM , Potter G , Land M , Ivanova N , Rohde M , Goker M , Detter JC , Kyrpides NC , Woyke T
Ref : Stand Genomic Sci , 6 :220 , 2012
PubMedID: 22768365
Gene_locus related to this paper: 9pseu-h8gca1 , 9pseu-h0k1d7 , 9pseu-h0k6z7

Title : Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801(T)) - Riedel_2012_Stand.Genomic.Sci_7_120
Author(s) : Riedel T , Held B , Nolan M , Lucas S , Lapidus A , Tice H , Del Rio TG , Cheng JF , Han C , Tapia R , Goodwin LA , Pitluck S , Liolios K , Mavromatis K , Pagani I , Ivanova N , Mikhailova N , Pati A , Chen A , Palaniappan K , Rohde M , Tindall BJ , Detter JC , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC
Ref : Stand Genomic Sci , 7 :120 , 2012
PubMedID: 23450211
Gene_locus related to this paper: owehd-g8r0w8

Title : Complete genome sequence of the rapeseed plant-growth promoting Serratia plymuthica strain AS9 - Neupane_2012_Stand.Genomic.Sci_6_54
Author(s) : Neupane S , Hogberg N , Alstrom S , Lucas S , Han J , Lapidus A , Cheng JF , Bruce D , Goodwin L , Pitluck S , Peters L , Ovchinnikova G , Lu M , Han C , Detter JC , Tapia R , Fiebig A , Land M , Hauser L , Kyrpides NC , Ivanova N , Pagani I , Klenk HP , Woyke T , Finlay RD
Ref : Stand Genomic Sci , 6 :54 , 2012
PubMedID: 22675598
Gene_locus related to this paper: serpl-s0ae95 , serpl-s0aiv6 , sersa-g0bfi6 , serp5-a8gjr8 , serpl-s4yi15

Title : Complete genome sequence of Serratia plymuthica strain AS12 - Neupane_2012_Stand.Genomic.Sci_6_165
Author(s) : Neupane S , Finlay RD , Alstrom S , Goodwin L , Kyrpides NC , Lucas S , Lapidus A , Bruce D , Pitluck S , Peters L , Ovchinnikova G , Chertkov O , Han J , Han C , Tapia R , Detter JC , Land M , Hauser L , Cheng JF , Ivanova N , Pagani I , Klenk HP , Woyke T , Hogberg N
Ref : Stand Genomic Sci , 6 :165 , 2012
PubMedID: 22768360
Gene_locus related to this paper: serpl-s0ae95 , serpl-s0aiv6 , sersa-g0bfi6 , serpl-i3aik7 , serpl-s4yi15

Title : Complete genome sequence of the plant-associated Serratia plymuthica strain AS13 - Neupane_2012_Stand.Genomic.Sci_7_22
Author(s) : Neupane S , Finlay RD , Kyrpides NC , Goodwin L , Alstrom S , Lucas S , Land M , Han J , Lapidus A , Cheng JF , Bruce D , Pitluck S , Peters L , Ovchinnikova G , Held B , Han C , Detter JC , Tapia R , Hauser L , Ivanova N , Pagani I , Woyke T , Klenk HP , Hogberg N
Ref : Stand Genomic Sci , 7 :22 , 2012
PubMedID: 23450001
Gene_locus related to this paper: serpl-s0ae95 , serpl-s0aiv6 , sersa-g0bfi6 , serp5-a8gjr8 , serpl-s4yi15

Title : Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1(T)) - Han_2012_Stand.Genomic.Sci_6_94
Author(s) : Han C , Kotsyurbenko O , Chertkov O , Held B , Lapidus A , Nolan M , Lucas S , Hammon N , Deshpande S , Cheng JF , Tapia R , Goodwin LA , Pitluck S , Liolios K , Pagani I , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Brambilla EM , Rohde M , Spring S , Sikorski J , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Detter JC
Ref : Stand Genomic Sci , 6 :94 , 2012
PubMedID: 22675602
Gene_locus related to this paper: sulky-e4u307

Title : Complete genome sequence of Desulfobulbus propionicus type strain (1pr3) - Pagani_2011_Stand.Genomic.Sci_4_100
Author(s) : Pagani I , Lapidus A , Nolan M , Lucas S , Hammon N , Deshpande S , Cheng JF , Chertkov O , Davenport K , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Mavromatis K , Ivanova N , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Detter JC , Brambilla E , Kannan KP , Djao OD , Rohde M , Pukall R , Spring S , Goker M , Sikorski J , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 4 :100 , 2011
PubMedID: 21475592
Gene_locus related to this paper: despd-e8rdj0 , despd-e8rjl1

Title : Complete genome sequence of Weeksella virosa type strain (9751) - Lang_2011_Stand.Genomic.Sci_4_81
Author(s) : Lang E , Teshima H , Lucas S , Lapidus A , Hammon N , Deshpande S , Nolan M , Cheng JF , Pitluck S , Liolios K , Pagani I , Mikhailova N , Ivanova N , Mavromatis K , Pati A , Tapia R , Han C , Goodwin L , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Brambilla EM , Kopitz M , Rohde M , Goker M , Tindall BJ , Detter JC , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC
Ref : Stand Genomic Sci , 4 :81 , 2011
PubMedID: 21475590
Gene_locus related to this paper: weevc-f0nz59 , weevc-f0p0t6 , weevc-f0p2m6 , weevc-f0p272 , weevc-f0nzv7 , weevc-f0p2m3

Title : Complete genome sequence of Truepera radiovictrix type strain (RQ-24) - Ivanova_2011_Stand.Genomic.Sci_4_91
Author(s) : Ivanova N , Rohde C , Munk C , Nolan M , Lucas S , Del Rio TG , Tice H , Deshpande S , Cheng JF , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Brambilla E , Rohde M , Goker M , Tindall BJ , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A
Ref : Stand Genomic Sci , 4 :91 , 2011
PubMedID: 21475591
Gene_locus related to this paper: trurr-d7cxw6

Title : Complete genome sequence of Paludibacter propionicigenes type strain (WB4) - Gronow_2011_Stand.Genomic.Sci_4_36
Author(s) : Gronow S , Munk C , Lapidus A , Nolan M , Lucas S , Hammon N , Deshpande S , Cheng JF , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Brambilla E , Rohde M , Goker M , Detter JC , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 4 :36 , 2011
PubMedID: 21475585
Gene_locus related to this paper: palpw-e4t0i0 , palpw-e4t5j4 , palpw-e4t287 , palpw-e4t2d5 , palpw-e4t2d6 , palpw-e4t5h4

Title : Complete genome sequence of Oceanithermus profundus type strain (506) - Pati_2011_Stand.Genomic.Sci_4_210
Author(s) : Pati A , Zhang X , Lapidus A , Nolan M , Lucas S , Del Rio TG , Tice H , Cheng JF , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Pagani I , Ivanova N , Mavromatis K , Chen A , Palaniappan K , Hauser L , Jeffries CD , Brambilla EM , Rohl A , Mwirichia R , Rohde M , Tindall BJ , Sikorski J , Wirth R , Goker M , Woyke T , Detter JC , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Land M
Ref : Stand Genomic Sci , 4 :210 , 2011
PubMedID: 21677858
Gene_locus related to this paper: ocep5-e4u9z9 , ocep5-e4u767

Title : Complete genome sequence of Tsukamurella paurometabola type strain (no. 33) - Munk_2011_Stand.Genomic.Sci_4_342
Author(s) : Munk AC , Lapidus A , Lucas S , Nolan M , Tice H , Cheng JF , Del Rio TG , Goodwin L , Pitluck S , Liolios K , Huntemann M , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Tapia R , Han C , Land M , Hauser L , Chang YJ , Jeffries CD , Brettin T , Yasawong M , Brambilla EM , Rohde M , Sikorski J , Goker M , Detter JC , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 4 :342 , 2011
PubMedID: 21886861
Gene_locus related to this paper: tsupd-d5uxc3

Title : Complete genome sequence of Cellulophaga algicola type strain (IC166) - Abt_2011_Stand.Genomic.Sci_4_72
Author(s) : Abt B , Lu M , Misra M , Han C , Nolan M , Lucas S , Hammon N , Deshpande S , Cheng JF , Tapia R , Goodwin L , Pitluck S , Liolios K , Pagani I , Ivanova N , Mavromatis K , Ovchinikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Detter JC , Brambilla E , Rohde M , Tindall BJ , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A
Ref : Stand Genomic Sci , 4 :72 , 2011
PubMedID: 21475589
Gene_locus related to this paper: celad-e6x4e5 , celad-e6x420 , celad-e6x777 , celad-e6xbe7

Title : The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri - Frese_2011_PLoS.Genet_7_e1001314
Author(s) : Frese SA , Benson AK , Tannock GW , Loach DM , Kim J , Zhang M , Oh PL , Heng NC , Patil PB , Juge N , Mackenzie DA , Pearson BM , Lapidus A , Dalin E , Tice H , Goltsman E , Land M , Hauser L , Ivanova N , Kyrpides NC , Walter J
Ref : PLoS Genet , 7 :e1001314 , 2011
PubMedID: 21379339
Gene_locus related to this paper: lacre-b3xl60 , lacrj-b2g622 , lacre-a0a0s4nmr3

Title : Complete genome sequence of Cellulophaga lytica type strain (LIM-21) - Pati_2011_Stand.Genomic.Sci_4_221
Author(s) : Pati A , Abt B , Teshima H , Nolan M , Lapidus A , Lucas S , Hammon N , Deshpande S , Cheng JF , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Pagani I , Mavromatis K , Ovchinikova G , Chen A , Palaniappan K , Land M , Hauser L , Jeffries CD , Detter JC , Brambilla EM , Kannan KP , Rohde M , Spring S , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Ivanova N
Ref : Stand Genomic Sci , 4 :221 , 2011
PubMedID: 21677859
Gene_locus related to this paper: cellc-f0re62 , cellc-f0rek7 , cellc-f0rf75 , cellc-f0rgt2

Title : Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95(T)) - Kiss_2011_Stand.Genomic.Sci_5_356
Author(s) : Kiss H , Nett M , Domin N , Martin K , Maresca JA , Copeland A , Lapidus A , Lucas S , Berry KW , Glavina Del Rio T , Dalin E , Tice H , Pitluck S , Richardson P , Bruce D , Goodwin L , Han C , Detter JC , Schmutz J , Brettin T , Land M , Hauser L , Kyrpides NC , Ivanova N , Goker M , Woyke T , Klenk HP , Bryant DA
Ref : Stand Genomic Sci , 5 :356 , 2011
PubMedID: 22675585
Gene_locus related to this paper: hera2-a9b061

Title : Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010 - Klenk_2011_Stand.Genomic.Sci_5_121
Author(s) : Klenk HP , Lapidus A , Chertkov O , Copeland A , Del Rio TG , Nolan M , Lucas S , Chen F , Tice H , Cheng JF , Han C , Bruce D , Goodwin L , Pitluck S , Pati A , Ivanova N , Mavromatis K , Daum C , Chen A , Palaniappan K , Chang YJ , Land M , Hauser L , Jeffries CD , Detter JC , Rohde M , Abt B , Pukall R , Goker M , Bristow J , Markowitz V , Hugenholtz P , Eisen JA
Ref : Stand Genomic Sci , 5 :121 , 2011
PubMedID: 22180816

Title : Genome sequence of Chthoniobacter flavus Ellin428, an aerobic heterotrophic soil bacterium - Kant_2011_J.Bacteriol_193_2902
Author(s) : Kant R , van Passel MW , Palva A , Lucas S , Lapidus A , Glavina Del Rio T , Dalin E , Tice H , Bruce D , Goodwin L , Pitluck S , Larimer FW , Land ML , Hauser L , Sangwan P , de Vos WM , Janssen PH , Smidt H
Ref : Journal of Bacteriology , 193 :2902 , 2011
PubMedID: 21460085
Gene_locus related to this paper: 9bact-b4cw55 , 9bact-b4cx55 , 9bact-b4cy19 , 9bact-b4cyt2 , 9bact-b4cyu5 , 9bact-b4cza3 , 9bact-b4d1u0 , 9bact-b4d2s5 , 9bact-b4d373 , 9bact-b4d393 , 9bact-b4d914 , 9bact-b4daa7 , 9bact-b4dav5 , 9bact-b4db04 , 9bact-b4dc95 , 9bact-b4d3q8.1 , 9bact-b4d3q8.2

Title : Complete genome sequence of Isosphaera pallida type strain (IS1B) - Goker_2011_Stand.Genomic.Sci_4_63
Author(s) : Goker M , Cleland D , Saunders E , Lapidus A , Nolan M , Lucas S , Hammon N , Deshpande S , Cheng JF , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Pagani I , Ivanova N , Mavromatis K , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Detter JC , Beck B , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 4 :63 , 2011
PubMedID: 21475588
Gene_locus related to this paper: isopi-e8qx42 , isopi-e8qz61 , isopi-e8r2k6 , isopi-e8r4h2 , isopi-e8r5e4 , isopi-e8r123 , isopi-e8qz30

Title : Complete genome of the cellulolytic ruminal bacterium Ruminococcus albus 7 - Suen_2011_J.Bacteriol_193_5574
Author(s) : Suen G , Stevenson DM , Bruce DC , Chertkov O , Copeland A , Cheng JF , Detter C , Detter JC , Goodwin LA , Han CS , Hauser LJ , Ivanova NN , Kyrpides NC , Land ML , Lapidus A , Lucas S , Ovchinnikova G , Pitluck S , Tapia R , Woyke T , Boyum J , Mead D , Weimer PJ
Ref : Journal of Bacteriology , 193 :5574 , 2011
PubMedID: 21914885
Gene_locus related to this paper: ruma7-e6ujm0 , ruma7-e6ukm6 , rumal-a0a011v2q8 , ruma7-e6ukb2

Title : Genome sequence of Pedosphaera parvula Ellin514, an aerobic Verrucomicrobial isolate from pasture soil - Kant_2011_J.Bacteriol_193_2900
Author(s) : Kant R , van Passel MW , Sangwan P , Palva A , Lucas S , Copeland A , Lapidus A , Glavina Del Rio T , Dalin E , Tice H , Bruce D , Goodwin L , Pitluck S , Chertkov O , Larimer FW , Land ML , Hauser L , Brettin TS , Detter JC , Han S , de Vos WM , Janssen PH , Smidt H
Ref : Journal of Bacteriology , 193 :2900 , 2011
PubMedID: 21460084
Gene_locus related to this paper: 9bact-b9xah7.1 , 9bact-b9xah7.2 , 9bact-b9xba2 , 9bact-b9xfz4 , 9bact-b9xh19 , 9bact-b9xhn8 , 9bact-b9xj62 , 9bact-b9xjh1 , 9bact-b9xku6 , 9bact-b9xku8 , 9bact-b9xnx1 , 9bact-b9xp64 , 9bact-b9xp74

Title : Non-contiguous finished genome sequence of Bacteroides coprosuis type strain (PC139) - Land_2011_Stand.Genomic.Sci_4_233
Author(s) : Land M , Held B , Gronow S , Abt B , Lucas S , Del Rio TG , Nolan M , Tice H , Cheng JF , Pitluck S , Liolios K , Pagani I , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Tapia R , Han C , Goodwin L , Chen A , Palaniappan K , Hauser L , Brambilla EM , Rohde M , Goker M , Detter JC , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A
Ref : Stand Genomic Sci , 4 :233 , 2011
PubMedID: 21677860
Gene_locus related to this paper: 9bace-f3zpr3 , 9bace-f3zre7

Title : Complete genome sequence of Mahella australiensis type strain (50-1 BON) - Sikorski_2011_Stand.Genomic.Sci_4_331
Author(s) : Sikorski J , Teshima H , Nolan M , Lucas S , Hammon N , Deshpande S , Cheng JF , Pitluck S , Liolios K , Pagani I , Ivanova N , Huntemann M , Mavromatis K , Ovchinikova G , Pati A , Tapia R , Han C , Goodwin L , Chen A , Palaniappan K , Land M , Hauser L , Ngatchou-Djao OD , Rohde M , Pukall R , Spring S , Abt B , Goker M , Detter JC , Woyke T , Bristow J , Markowitz V , Hugenholtz P , Eisen JA , Kyrpides NC , Klenk HP , Lapidus A
Ref : Stand Genomic Sci , 4 :331 , 2011
PubMedID: 21886860
Gene_locus related to this paper: maha5-f3zvv5

Title : Complete genome sequence of the filamentous anoxygenic phototrophic bacterium Chloroflexus aurantiacus - Tang_2011_BMC.Genomics_12_334
Author(s) : Tang KH , Barry K , Chertkov O , Dalin E , Han CS , Hauser LJ , Honchak BM , Karbach LE , Land ML , Lapidus A , Larimer FW , Mikhailova N , Pitluck S , Pierson BK , Blankenship RE
Ref : BMC Genomics , 12 :334 , 2011
PubMedID: 21714912
Gene_locus related to this paper: chlaa-a9we32

Title : Genome sequence of Victivallis vadensis ATCC BAA-548, an anaerobic bacterium from the phylum Lentisphaerae, isolated from the human gastrointestinal tract - van Passel_2011_J.Bacteriol_193_2373
Author(s) : van Passel MW , Kant R , Palva A , Lucas S , Copeland A , Lapidus A , Glavina Del Rio T , Dalin E , Tice H , Bruce D , Goodwin L , Pitluck S , Davenport KW , Sims D , Brettin TS , Detter JC , Han S , Larimer FW , Land ML , Hauser L , Kyrpides N , Ovchinnikova G , Richardson PP , de Vos WM , Smidt H , Zoetendal EG
Ref : Journal of Bacteriology , 193 :2373 , 2011
PubMedID: 21398537
Gene_locus related to this paper: 9bact-d1n3e0 , 9bact-d1n3w1 , 9bact-d1n5u2 , 9bact-d1n6r9 , 9bact-d1n8l2 , 9bact-d1n8z8 , 9bact-d1n9n1 , 9bact-d1n9u1 , 9bact-d1n752 , 9bact-d1n881 , 9bact-d1naa7 , 9bact-d1nb62 , 9bact-d1nbd5 , 9bact-d1nbg1 , 9bact-d1nbh9 , 9bact-d1nbv9

Title : Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21) - Chang_2011_Stand.Genomic.Sci_5_97
Author(s) : Chang YJ , Land M , Hauser L , Chertkov O , Del Rio TG , Nolan M , Copeland A , Tice H , Cheng JF , Lucas S , Han C , Goodwin L , Pitluck S , Ivanova N , Ovchinikova G , Pati A , Chen A , Palaniappan K , Mavromatis K , Liolios K , Brettin T , Fiebig A , Rohde M , Abt B , Goker M , Detter JC , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A
Ref : Stand Genomic Sci , 5 :97 , 2011
PubMedID: 22180814
Gene_locus related to this paper: 9chlr-d6ttv1 , 9chlr-d6thn5 , 9chlr-d6tk73 , 9chlr-d6tzq4 , 9chlr-d6tri7 , 9chlr-d6tuz4 , 9chlr-d6tri9 , 9chlr-d6tsy5 , 9chlr-d6u5k6 , 9chlr-d6u6a8 , 9chlr-d6tye6 , 9chlr-d6tpj9

Title : Complete genome sequence of the cellulose-degrading bacterium Cellulosilyticum lentocellum - Miller_2011_J.Bacteriol_193_2357
Author(s) : Miller DA , Suen G , Bruce D , Copeland A , Cheng JF , Detter C , Goodwin LA , Han CS , Hauser LJ , Land ML , Lapidus A , Lucas S , Meincke L , Pitluck S , Tapia R , Teshima H , Woyke T , Fox BG , Angert ER , Currie CR
Ref : Journal of Bacteriology , 193 :2357 , 2011
PubMedID: 21398547
Gene_locus related to this paper: celld-f2js06

Title : Complete genome sequence of Bacteroides salanitronis type strain (BL78) - Gronow_2011_Stand.Genomic.Sci_4_191
Author(s) : Gronow S , Held B , Lucas S , Lapidus A , Del Rio TG , Nolan M , Tice H , Deshpande S , Cheng JF , Pitluck S , Liolios K , Pagani I , Ivanova N , Mavromatis K , Pati A , Tapia R , Han C , Goodwin L , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Brambilla EM , Rohde M , Goker M , Detter JC , Woyke T , Bristow J , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Eisen JA
Ref : Stand Genomic Sci , 4 :191 , 2011
PubMedID: 21677856
Gene_locus related to this paper: bacsh-f0qz10 , bacsh-f0qz83 , bacsh-f0r0m7 , bacsh-f0r0s7 , bacsh-f0r5r9 , bacsh-f0r030 , bacsh-f0r440 , bacsh-f0r869 , bacsh-f0qzb0 , bacsh-f0r6i2

Title : Complete genome sequence of Leadbetterella byssophila type strain (4M15) - Abt_2011_Stand.Genomic.Sci_4_2
Author(s) : Abt B , Teshima H , Lucas S , Lapidus A , Del Rio TG , Nolan M , Tice H , Cheng JF , Pitluck S , Liolios K , Pagani I , Ivanova N , Mavromatis K , Pati A , Tapia R , Han C , Goodwin L , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Goker M , Tindall BJ , Detter JC , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC
Ref : Stand Genomic Sci , 4 :2 , 2011
PubMedID: 21475582
Gene_locus related to this paper: leab4-e4rqy5 , leab4-e4ru27 , leab4-e4ruf5 , leab4-e4rul3 , leab4-e4rut6 , leab4-e4rwa2 , leab4-e4rwt5 , leab4-e4rwv8 , leab4-e4ry52 , leab4-e4rzw2

Title : Complete genome sequence of the cellulolytic thermophile Clostridium thermocellum DSM1313 - Feinberg_2011_J.Bacteriol_193_2906
Author(s) : Feinberg L , Foden J , Barrett T , Davenport KW , Bruce D , Detter C , Tapia R , Han C , Lapidus A , Lucas S , Cheng JF , Pitluck S , Woyke T , Ivanova N , Mikhailova N , Land M , Hauser L , Argyros DA , Goodwin L , Hogsett D , Caiazza N
Ref : Journal of Bacteriology , 193 :2906 , 2011
PubMedID: 21460082
Gene_locus related to this paper: cloth-a3dgp4 , cloth-a3dhx6 , clotm-c7hgp9 , clotm-c7hjn0

Title : Massive changes in genome architecture accompany the transition to self-fertility in the filamentous fungus Neurospora tetrasperma - Ellison_2011_Genetics_189_55
Author(s) : Ellison CE , Stajich JE , Jacobson DJ , Natvig DO , Lapidus A , Foster B , Aerts A , Riley R , Lindquist EA , Grigoriev IV , Taylor JW
Ref : Genetics , 189 :55 , 2011
PubMedID: 21750257
Gene_locus related to this paper: neucr-90C4.300 , neucr-B19A17.360 , neucr-B23G1.090 , neucr-NCU00292.1 , neucr-NCU02679.1 , neucr-NCU04930.1 , neucr-NCU06573.1 , neucr-NCU08752.1 , neucr-NCU09575.1 , neucr-NCU10022.1 , neucr-q7s1x0 , neucr-q7s216 , neucr-q7s259 , neucr-q7s260 , neucr-q7scr4 , neut8-f8n463 , neut9-g4uk39 , neucr-f5hbr2 , neut8-f8mcp7 , neucr-q7ry64 , neucr-FAED , neut8-f8mrh8

Title : Complete genome sequence of Arthrobacter phenanthrenivorans type strain (Sphe3) - Kallimanis_2011_Stand.Genomic.Sci_4_123
Author(s) : Kallimanis A , LaButti KM , Lapidus A , Clum A , Lykidis A , Mavromatis K , Pagani I , Liolios K , Ivanova N , Goodwin L , Pitluck S , Chen A , Palaniappan K , Markowitz V , Bristow J , Velentzas AD , Perisynakis A , Ouzounis CC , Kyrpides NC , Koukkou AI , Drainas C
Ref : Stand Genomic Sci , 4 :123 , 2011
PubMedID: 21677849
Gene_locus related to this paper: artpp-f0m1v4 , artpp-f0m1v5 , artpp-f0m2s7 , artpp-f0m5g1 , artpp-f0m7u7 , artpp-f0m8i0 , artpp-f0m8w6 , artpp-f0m8w7 , artpp-f0m393 , artpp-f0mb51

Title : Genome sequence of the 1,4-dioxane-degrading Pseudonocardia dioxanivorans strain CB1190 - Sales_2011_J.Bacteriol_193_4549
Author(s) : Sales CM , Mahendra S , Grostern A , Parales RE , Goodwin LA , Woyke T , Nolan M , Lapidus A , Chertkov O , Ovchinnikova G , Sczyrba A , Alvarez-Cohen L
Ref : Journal of Bacteriology , 193 :4549 , 2011
PubMedID: 21725009
Gene_locus related to this paper: 9pseu-f4ck55 , 9pseu-f4cxt1 , pseux-f4cs60 , pseux-f4cva7 , pseux-f4czc7 , pseux-f4czf1 , pseux-f4czh4 , pseux-f4crs9 , pseux-f4cs44 , pseux-f4cw88 , pseux-f4cxn4

Title : Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti - Galardini_2011_BMC.Genomics_12_235
Author(s) : Galardini M , Mengoni A , Brilli M , Pini F , Fioravanti A , Lucas S , Lapidus A , Cheng JF , Goodwin L , Pitluck S , Land M , Hauser L , Woyke T , Mikhailova N , Ivanova N , Daligault H , Bruce D , Detter C , Tapia R , Han C , Teshima H , Mocali S , Bazzicalupo M , Biondi EG
Ref : BMC Genomics , 12 :235 , 2011
PubMedID: 21569405
Gene_locus related to this paper: rhime-PCAD , rhime-RB1395 , sinmb-a0a0e0ub90

Title : Complete genome sequence of Marivirga tractuosa type strain (H-43) - Pagani_2011_Stand.Genomic.Sci_4_154
Author(s) : Pagani I , Chertkov O , Lapidus A , Lucas S , Del Rio TG , Tice H , Copeland A , Cheng JF , Nolan M , Saunders E , Pitluck S , Held B , Goodwin L , Liolios K , Ovchinikova G , Ivanova N , Mavromatis K , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Jeffries CD , Detter JC , Han C , Tapia R , Ngatchou-Djao OD , Rohde M , Goker M , Spring S , Sikorski J , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC
Ref : Stand Genomic Sci , 4 :154 , 2011
PubMedID: 21677852
Gene_locus related to this paper: marth-e4tt12

Title : Genome sequence of the methanotrophic alphaproteobacterium Methylocystis sp. strain Rockwell (ATCC 49242) - Stein_2011_J.Bacteriol_193_2668
Author(s) : Stein LY , Bringel F , DiSpirito AA , Han S , Jetten MS , Kalyuzhnaya MG , Kits KD , Klotz MG , Op den Camp HJ , Semrau JD , Vuilleumier S , Bruce DC , Cheng JF , Davenport KW , Goodwin L , Hauser L , Lajus A , Land ML , Lapidus A , Lucas S , Medigue C , Pitluck S , Woyke T
Ref : Journal of Bacteriology , 193 :2668 , 2011
PubMedID: 21441518
Gene_locus related to this paper: 9rhiz-e8ky64 , 9rhiz-e8l0f5 , 9rhiz-e8l1r9 , 9rhiz-e8l2p9 , 9rhiz-e8l5j3 , 9rhiz-e8l733

Title : Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and Caldicellulosiruptor lactoaceticus - Blumer-Schuette_2011_J.Bacteriol_193_1483
Author(s) : Blumer-Schuette SE , Ozdemir I , Mistry D , Lucas S , Lapidus A , Cheng JF , Goodwin LA , Pitluck S , Land ML , Hauser LJ , Woyke T , Mikhailova N , Pati A , Kyrpides NC , Ivanova N , Detter JC , Walston-Davenport K , Han S , Adams MW , Kelly RM
Ref : Journal of Bacteriology , 193 :1483 , 2011
PubMedID: 21216991
Gene_locus related to this paper: calki-e4s634 , calh1-e4q772

Title : Genome Sequence of the ethene- and vinyl chloride-oxidizing actinomycete Nocardioides sp. strain JS614 - Coleman_2011_J.Bacteriol_193_3399
Author(s) : Coleman NV , Wilson NL , Barry K , Brettin TS , Bruce DC , Copeland A , Dalin E , Detter JC , Del Rio TG , Goodwin LA , Hammon NM , Han S , Hauser LJ , Israni S , Kim E , Kyrpides N , Land ML , Lapidus A , Larimer FW , Lucas S , Pitluck S , Richardson P , Schmutz J , Tapia R , Thompson S , Tice HN , Spain JC , Gossett JG , Mattes TE
Ref : Journal of Bacteriology , 193 :3399 , 2011
PubMedID: 21551312
Gene_locus related to this paper: nocsj-a1sil5

Title : Complete genome sequence of Thioalkalivibrio sulfidophilus HL-EbGr7 - Muyzer_2011_Stand.Genomic.Sci_4_23
Author(s) : Muyzer G , Sorokin DY , Mavromatis K , Lapidus A , Clum A , Ivanova N , Pati A , D'Haeseleer P , Woyke T , Kyrpides NC
Ref : Stand Genomic Sci , 4 :23 , 2011
PubMedID: 21475584
Gene_locus related to this paper: thish-b8gp07 , thish-b8gpt7 , thish-b8gs68 , thish-b8gu24 , thish-b8guj8 , thish-b8gqw0

Title : Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1) - Pitluck_2011_Stand.Genomic.Sci_4_54
Author(s) : Pitluck S , Sikorski J , Zeytun A , Lapidus A , Nolan M , Lucas S , Hammon N , Deshpande S , Cheng JF , Tapia R , Han C , Goodwin L , Liolios K , Pagani I , Ivanova N , Mavromatis K , Pati A , Chen A , Palaniappan K , Hauser L , Chang YJ , Jeffries CD , Detter JC , Brambilla E , Djao OD , Rohde M , Spring S , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Land M
Ref : Stand Genomic Sci , 4 :54 , 2011
PubMedID: 21475587

Title : Comparative genomics of xylose-fermenting fungi for enhanced biofuel production - Wohlbach_2011_Proc.Natl.Acad.Sci.U.S.A_108_13212
Author(s) : Wohlbach DJ , Kuo A , Sato TK , Potts KM , Salamov AA , LaButti KM , Sun H , Clum A , Pangilinan JL , Lindquist EA , Lucas S , Lapidus A , Jin M , Gunawan C , Balan V , Dale BE , Jeffries TW , Zinkel R , Barry KW , Grigoriev IV , Gasch AP
Ref : Proc Natl Acad Sci U S A , 108 :13212 , 2011
PubMedID: 21788494
Gene_locus related to this paper: cantc-g3b3r0 , spapn-g3ap60 , spapn-g3aif9 , cantc-g3axw7

Title : Complete genome sequence of Haliscomenobacter hydrossis type strain (O) - Daligault_2011_Stand.Genomic.Sci_4_352
Author(s) : Daligault H , Lapidus A , Zeytun A , Nolan M , Lucas S , Del Rio TG , Tice H , Cheng JF , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Pagani I , Ivanova N , Huntemann M , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Brambilla EM , Rohde M , Verbarg S , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Woyke T
Ref : Stand Genomic Sci , 4 :352 , 2011
PubMedID: 21886862
Gene_locus related to this paper: halh1-f4kq83 , halh1-f4kt82 , halh1-f4l3j3 , halh1-f4krm2 , halh1-f4kqu5 , halh1-f4l2w7

Title : Genome sequence of the verrucomicrobium Opitutus terrae PB90-1, an abundant inhabitant of rice paddy soil ecosystems - van Passel_2011_J.Bacteriol_193_2367
Author(s) : van Passel MW , Kant R , Palva A , Copeland A , Lucas S , Lapidus A , Glavina Del Rio T , Pitluck S , Goltsman E , Clum A , Sun H , Schmutz J , Larimer FW , Land ML , Hauser L , Kyrpides N , Mikhailova N , Richardson PP , Janssen PH , de Vos WM , Smidt H
Ref : Journal of Bacteriology , 193 :2367 , 2011
PubMedID: 21398538
Gene_locus related to this paper: opitp-b1zrm2

Title : Complete genome sequence of Bacteroides helcogenes type strain (P 36-108) - Pati_2011_Stand.Genomic.Sci_4_45
Author(s) : Pati A , Gronow S , Zeytun A , Lapidus A , Nolan M , Hammon N , Deshpande S , Cheng JF , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Pagani I , Ivanova N , Mavromatis K , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Detter JC , Brambilla E , Rohde M , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lucas S
Ref : Stand Genomic Sci , 4 :45 , 2011
PubMedID: 21475586
Gene_locus related to this paper: bact6-e6sny5 , bact6-e6sqv4 , bact6-e6str2 , bact6-e6suh8 , bact6-e6suk4 , bact6-e6sn75

Title : Complete genome sequence of Vulcanisaeta distributa type strain (IC-017) - Mavromatis_2010_Stand.Genomic.Sci_3_117
Author(s) : Mavromatis K , Sikorski J , Pabst E , Teshima H , Lapidus A , Lucas S , Nolan M , Glavina Del Rio T , Cheng JF , Bruce D , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Spring S , Goker M , Wirth R , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC
Ref : Stand Genomic Sci , 3 :117 , 2010
PubMedID: 21304741
Gene_locus related to this paper: vuldi-e1qt20 , vuldi-e1qqi6

Title : Complete genome sequence of Haliangium ochraceum type strain (SMP-2) - Ivanova_2010_Stand.Genomic.Sci_2_96
Author(s) : Ivanova N , Daum C , Lang E , Abt B , Kopitz M , Saunders E , Lapidus A , Lucas S , Glavina Del Rio T , Nolan M , Tice H , Copeland A , Cheng JF , Chen F , Bruce D , Goodwin L , Pitluck S , Mavromatis K , Pati A , Mikhailova N , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Detter JC , Brettin T , Rohde M , Goker M , Bristow J , Markowitz V , Eisen JA , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 2 :96 , 2010
PubMedID: 21304682
Gene_locus related to this paper: halo1-d0lid9 , halo1-d0lm49 , halo1-d0lrn3 , halo1-d0ljm2

Title : Complete genome sequence of Coraliomargarita akajimensis type strain (04OKA010-24) - Mavromatis_2010_Stand.Genomic.Sci_2_290
Author(s) : Mavromatis K , Abt B , Brambilla E , Lapidus A , Copeland A , Deshpande S , Nolan M , Lucas S , Tice H , Cheng JF , Han C , Detter JC , Woyke T , Goodwin L , Pitluck S , Held B , Brettin T , Tapia R , Ivanova N , Mikhailova N , Pati A , Liolios K , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC
Ref : Stand Genomic Sci , 2 :290 , 2010
PubMedID: 21304713
Gene_locus related to this paper: corad-d5ehl2 , corad-d5ene2 , corad-d5epb6 , corad-d5epc2 , corad-d5epz5

Title : Genome sequence of the Fleming strain of Micrococcus luteus, a simple free-living actinobacterium - Young_2010_J.Bacteriol_192_841
Author(s) : Young M , Artsatbanov V , Beller HR , Chandra G , Chater KF , Dover LG , Goh EB , Kahan T , Kaprelyants AS , Kyrpides N , Lapidus A , Lowry SR , Lykidis A , Mahillon J , Markowitz V , Mavromatis K , Mukamolova GV , Oren A , Rokem JS , Smith MC , Young DI , Greenblatt CL
Ref : Journal of Bacteriology , 192 :841 , 2010
PubMedID: 19948807
Gene_locus related to this paper: miclc-c5cbn3

Title : Complete genome sequence of Planctomyces limnophilus type strain (Mu 290) - Labutti_2010_Stand.Genomic.Sci_3_47
Author(s) : LaButti K , Sikorski J , Schneider S , Nolan M , Lucas S , Glavina Del Rio T , Tice H , Cheng JF , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Tindall BJ , Rohde M , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A
Ref : Stand Genomic Sci , 3 :47 , 2010
PubMedID: 21304691
Gene_locus related to this paper: plal2-d5spy8 , plal2-d5ssg7 , plal2-d5ssq1 , plal2-d5stl8 , plal2-d5su74 , plal2-d5swy9 , plal2-d5sxa1 , plal2-d5sxi9 , plal2-d5swp5

Title : Complete genome sequence of Cellulomonas flavigena type strain (134) - Abt_2010_Stand.Genomic.Sci_3_15
Author(s) : Abt B , Foster B , Lapidus A , Clum A , Sun H , Pukall R , Lucas S , Glavina Del Rio T , Nolan M , Tice H , Cheng JF , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Ovchinnikova G , Pati A , Goodwin L , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 3 :15 , 2010
PubMedID: 21304688
Gene_locus related to this paper: celfn-d5uif8 , celfn-d5uil9 , celfn-d5ukl6 , celfn-d5ulu1 , celfn-d5ulp3 , celfn-d5ul75 , celfn-d5ufu5 , celfn-d5ugh8

Title : Complete genome sequence of Sulfurimonas autotrophica type strain (OK10) - Sikorski_2010_Stand.Genomic.Sci_3_194
Author(s) : Sikorski J , Munk C , Lapidus A , Ngatchou Djao OD , Lucas S , Glavina Del Rio T , Nolan M , Tice H , Han C , Cheng JF , Tapia R , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Sims D , Meincke L , Brettin T , Detter JC , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Lang E , Spring S , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 3 :194 , 2010
PubMedID: 21304749
Gene_locus related to this paper: sulao-e0up24 , sulao-e0ute6 , sulao-metxa

Title : Complete genome sequence of Methanothermus fervidus type strain (V24S) - Anderson_2010_Stand.Genomic.Sci_3_315
Author(s) : Anderson I , Djao OD , Misra M , Chertkov O , Nolan M , Lucas S , Lapidus A , Del Rio TG , Tice H , Cheng JF , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Brambilla E , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Sikorski J , Spring S , Rohde M , Eichinger K , Huber H , Wirth R , Goker M , Detter JC , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC
Ref : Stand Genomic Sci , 3 :315 , 2010
PubMedID: 21304736

Title : Complete genome sequence of Aminobacterium colombiense type strain (ALA-1) - Chertkov_2010_Stand.Genomic.Sci_2_280
Author(s) : Chertkov O , Sikorski J , Brambilla E , Lapidus A , Copeland A , Glavina Del Rio T , Nolan M , Lucas S , Tice H , Cheng JF , Han C , Detter JC , Bruce D , Tapia R , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Spring S , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 2 :280 , 2010
PubMedID: 21304712

Title : Complete genome sequence of Olsenella uli type strain (VPI D76D-27C) - Goker_2010_Stand.Genomic.Sci_3_76
Author(s) : Goker M , Held B , Lucas S , Nolan M , Yasawong M , Glavina Del Rio T , Tice H , Cheng JF , Bruce D , Detter JC , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Sikorski J , Pukall R , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A
Ref : Stand Genomic Sci , 3 :76 , 2010
PubMedID: 21304694
Gene_locus related to this paper: olsuv-e1qw86 , olsuv-e1qw87 , olsuv-e1qz20 , olsuv-e1qwd9

Title : Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07) - Foster_2010_Stand.Genomic.Sci_2_1
Author(s) : Foster B , Pukall R , Abt B , Nolan M , Glavina Del Rio T , Chen F , Lucas S , Tice H , Pitluck S , Cheng JF , Chertkov O , Brettin T , Han C , Detter JC , Bruce D , Goodwin L , Ivanova N , Mavromatis K , Pati A , Mikhailova N , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A
Ref : Stand Genomic Sci , 2 :1 , 2010
PubMedID: 21304672

Title : Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1) - Goker_2010_Stand.Genomic.Sci_3_66
Author(s) : Goker M , Held B , Lapidus A , Nolan M , Spring S , Yasawong M , Lucas S , Glavina Del Rio T , Tice H , Cheng JF , Goodwin L , Tapia R , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Brambilla E , Land M , Hauser L , Chang YJ , Jeffries CD , Brettin T , Detter JC , Han C , Rohde M , Sikorski J , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 3 :66 , 2010
PubMedID: 21304693

Title : Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1) - Djao_2010_Stand.Genomic.Sci_3_268
Author(s) : Djao OD , Zhang X , Lucas S , Lapidus A , Del Rio TG , Nolan M , Tice H , Cheng JF , Han C , Tapia R , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Ovchinnikova G , Pati A , Brambilla E , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Sikorski J , Spring S , Goker M , Detter JC , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 3 :268 , 2010
PubMedID: 21304731
Gene_locus related to this paper: synlt-d7cpg4

Title : Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA) - Mavromatis_2010_Stand.Genomic.Sci_2_9
Author(s) : Mavromatis K , Sikorski J , Lapidus A , Glavina Del Rio T , Copeland A , Tice H , Cheng JF , Lucas S , Chen F , Nolan M , Bruce D , Goodwin L , Pitluck S , Ivanova N , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Meincke L , Sims D , Chertkov O , Han C , Brettin T , Detter JC , Wahrenburg C , Rohde M , Pukall R , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC
Ref : Stand Genomic Sci , 2 :9 , 2010
PubMedID: 21304673

Title : Complete genome sequence of Intrasporangium calvum type strain (7 KIP) - Del Rio_2010_Stand.Genomic.Sci_3_294
Author(s) : Del Rio TG , Chertkov O , Yasawong M , Lucas S , Deshpande S , Cheng JF , Detter C , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Pukall R , Sikorski J , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A
Ref : Stand Genomic Sci , 3 :294 , 2010
PubMedID: 21304734
Gene_locus related to this paper: intc7-e6s7p7 , intc7-e6s9d8 , intc7-e6sds3 , intc7-e6s7a1 , intc7-e6sc55

Title : Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3) - Pitluck_2010_Stand.Genomic.Sci_3_285
Author(s) : Pitluck S , Yasawong M , Held B , Lapidus A , Nolan M , Copeland A , Lucas S , Del Rio TG , Tice H , Cheng JF , Chertkov O , Goodwin L , Tapia R , Han C , Liolios K , Ivanova N , Mavromatis K , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Pukall R , Spring S , Rohde M , Sikorski J , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 3 :285 , 2010
PubMedID: 21304733
Gene_locus related to this paper: 9bact-e3cyn3

Title : Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022) - Pati_2010_Stand.Genomic.Sci_2_49
Author(s) : Pati A , LaButti K , Pukall R , Nolan M , Glavina Del Rio T , Tice H , Cheng JF , Lucas S , Chen F , Copeland A , Ivanova N , Mavromatis K , Mikhailova N , Pitluck S , Bruce D , Goodwin L , Land M , Hauser L , Chang YJ , Jeffries CD , Chen A , Palaniappan K , Chain P , Brettin T , Sikorski J , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A
Ref : Stand Genomic Sci , 2 :49 , 2010
PubMedID: 21304677

Title : Complete genome sequence of Thermaerobacter marianensis type strain (7p75a) - Han_2010_Stand.Genomic.Sci_3_337
Author(s) : Han C , Gu W , Zhang X , Lapidus A , Nolan M , Copeland A , Lucas S , Del Rio TG , Tice H , Cheng JF , Tapia R , Goodwin L , Pitluck S , Pagani I , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Schneider S , Rohde M , Goker M , Pukall R , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Detter JC
Ref : Stand Genomic Sci , 3 :337 , 2010
PubMedID: 21304738
Gene_locus related to this paper: them7-e6sh68 , them7-e6shq4 , them7-e6shv1

Title : Complete genome sequence of the Medicago microsymbiont Ensifer (Sinorhizobium) medicae strain WSM419 - Reeve_2010_Stand.Genomic.Sci_2_77
Author(s) : Reeve W , Chain P , O'Hara G , Ardley J , Nandesena K , Brau L , Tiwari R , Malfatti S , Kiss H , Lapidus A , Copeland A , Nolan M , Land M , Hauser L , Chang YJ , Ivanova N , Mavromatis K , Markowitz V , Kyrpides N , Gollagher M , Yates R , Dilworth M , Howieson J
Ref : Stand Genomic Sci , 2 :77 , 2010
PubMedID: 21304680

Title : Complete genome sequence of Arcanobacterium haemolyticum type strain (11018) - Yasawong_2010_Stand.Genomic.Sci_3_126
Author(s) : Yasawong M , Teshima H , Lapidus A , Nolan M , Lucas S , Glavina Del Rio T , Tice H , Cheng JF , Bruce D , Detter C , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Sikorski J , Pukall R , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 3 :126 , 2010
PubMedID: 21304742
Gene_locus related to this paper: archd-d7bl98 , archd-d7bm52 , archd-d7bne1 , archd-d7bkh7

Title : Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1) - Sikorski_2010_Stand.Genomic.Sci_3_304
Author(s) : Sikorski J , Chertkov O , Lapidus A , Nolan M , Lucas S , Del Rio TG , Tice H , Cheng JF , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Brambilla E , Yasawong M , Rohde M , Pukall R , Spring S , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 3 :304 , 2010
PubMedID: 21304735

Title : Complete genome sequence of Archaeoglobus profundus type strain (AV18) - von Jan_2010_Stand.Genomic.Sci_2_327
Author(s) : von Jan M , Lapidus A , Del Rio TG , Copeland A , Tice H , Cheng JF , Lucas S , Chen F , Nolan M , Goodwin L , Han C , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Ovchinnikova G , Chertkov O , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Saunders E , Brettin T , Detter JC , Chain P , Eichinger K , Huber H , Spring S , Rohde M , Goker M , Wirth R , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 2 :327 , 2010
PubMedID: 21304717

Title : Complete genome sequence of Acidaminococcus fermentans type strain (VR4) - Chang_2010_Stand.Genomic.Sci_3_1
Author(s) : Chang YJ , Pukall R , Saunders E , Lapidus A , Copeland A , Nolan M , Glavina Del Rio T , Lucas S , Chen F , Tice H , Cheng JF , Han C , Detter JC , Bruce D , Goodwin L , Pitluck S , Mikhailova N , Liolios K , Pati A , Ivanova N , Mavromatis K , Chen A , Palaniappan K , Land M , Hauser L , Jeffries CD , Brettin T , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 3 :1 , 2010
PubMedID: 21304687
Gene_locus related to this paper: acifv-d2rju3 , acifv-d2rk38 , acifv-d2rmp3

Title : Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207) - Labutti_2010_Stand.Genomic.Sci_3_85
Author(s) : LaButti K , Mayilraj S , Clum A , Lucas S , Glavina Del Rio T , Nolan M , Tice H , Cheng JF , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Goodwin L , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Spring S , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A
Ref : Stand Genomic Sci , 3 :85 , 2010
PubMedID: 21304695

Title : Complete genome sequence of Streptosporangium roseum type strain (NI 9100) - Nolan_2010_Stand.Genomic.Sci_2_29
Author(s) : Nolan M , Sikorski J , Jando M , Lucas S , Lapidus A , Glavina Del Rio T , Chen F , Tice H , Pitluck S , Cheng JF , Chertkov O , Sims D , Meincke L , Brettin T , Han C , Detter JC , Bruce D , Goodwin L , Land M , Hauser L , Chang YJ , Jeffries CD , Ivanova N , Mavromatis K , Mikhailova N , Chen A , Palaniappan K , Chain P , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 2 :29 , 2010
PubMedID: 21304675
Gene_locus related to this paper: strrd-d2aqk6 , strrd-d2aqt5 , strrd-d2ar22 , strrd-d2ar75 , strrd-d2arp5 , strrd-d2auf6 , strrd-d2aw37 , strrd-d2awh0 , strrd-d2awp2 , strrd-d2axt7 , strrd-d2ayh4 , strrd-d2ayq3 , strrd-d2ayx8 , strrd-d2az98 , strrd-d2b0g2 , strrd-d2b0t3 , strrd-d2b0u2 , strrd-d2b0u6 , strrd-d2b0w5 , strrd-d2b2m3 , strrd-d2b2r7 , strrd-d2b3g9 , strrd-d2b3i2 , strrd-d2b3i7 , strrd-d2b4f5 , strrd-d2b4y4 , strrd-d2b4z9 , strrd-d2b5z6 , strrd-d2b6v8 , strrd-d2b6y3 , strrd-d2b7a9 , strrd-d2b7h6 , strrd-d2b9k5 , strrd-d2b9n9 , strrd-d2b152 , strrd-d2b235 , strrd-d2b519 , strrd-d2b540 , strrd-d2b638 , strrd-d2b812 , strrd-d2ba59 , strrd-d2bae6 , strrd-d2bai2 , strrd-d2bbp7 , strrd-d2bc04 , strrd-d2bc32 , strrd-d2bc93 , strrd-d2bd97 , strrd-d2bdh0 , strrd-d2bdh1 , strrd-d2bdl4 , strrd-d2bdq5 , strrd-d2bdt5 , strrd-d2bdv3 , strrd-d2be60 , strrd-d2be88 , strrd-d2bf33 , strrd-d2bf77 , strrd-d2b7c2 , strrd-d2awc2 , strrd-d2as88 , strrd-d2aw56 , strrd-d2b3r3 , strrd-d2bf75 , strrd-d2b2d4 , strrd-d2b1i6

Title : Complete genome sequence of Spirochaeta smaragdinae type strain (SEBR 4228) - Mavromatis_2010_Stand.Genomic.Sci_3_136
Author(s) : Mavromatis K , Yasawong M , Chertkov O , Lapidus A , Lucas S , Nolan M , Del Rio TG , Tice H , Cheng JF , Pitluck S , Liolios K , Ivanova N , Tapia R , Han C , Bruce D , Goodwin L , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Detter JC , Rohde M , Brambilla E , Spring S , Goker M , Sikorski J , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC
Ref : Stand Genomic Sci , 3 :136 , 2010
PubMedID: 21304743
Gene_locus related to this paper: spiss-e1r584 , spiss-e1rce8

Title : Complete genome sequence of Meiothermus silvanus type strain (VI-R2) - Sikorski_2010_Stand.Genomic.Sci_3_37
Author(s) : Sikorski J , Tindall BJ , Lowry S , Lucas S , Nolan M , Copeland A , Glavina Del Rio T , Tice H , Cheng JF , Han C , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Goodwin L , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A
Ref : Stand Genomic Sci , 3 :37 , 2010
PubMedID: 21304690
Gene_locus related to this paper: meisd-d7bbz4 , meisd-d7bbu2 , meisd-d7bjh0 , meisd-d7bez6 , meisd-d7bfp6

Title : Complete genome sequence of 'Thermobaculum terrenum' type strain (YNP1) - Kiss_2010_Stand.Genomic.Sci_3_153
Author(s) : Kiss H , Cleland D , Lapidus A , Lucas S , Del Rio TG , Nolan M , Tice H , Han C , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Lu M , Brettin T , Detter JC , Goker M , Tindall BJ , Beck B , McDermott TR , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Cheng JF
Ref : Stand Genomic Sci , 3 :153 , 2010
PubMedID: 21304745
Gene_locus related to this paper: thet1-d1cbe2 , thet1-d1cbh1 , thet1-d1cbh5 , thet1-d1cdw7 , thet1-d1cej0 , thet1-d1cfr4 , thet1-d1chv7 , thet1-d1cih9

Title : Complete genome sequence of Arcobacter nitrofigilis type strain (CI) - Pati_2010_Stand.Genomic.Sci_2_300
Author(s) : Pati A , Gronow S , Lapidus A , Copeland A , Glavina Del Rio T , Nolan M , Lucas S , Tice H , Cheng JF , Han C , Chertkov O , Bruce D , Tapia R , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Detter JC , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC
Ref : Stand Genomic Sci , 2 :300 , 2010
PubMedID: 21304714
Gene_locus related to this paper: arcnc-d5v0e6 , arcnc-d5v643

Title : Complete genome sequence of Acetohalobium arabaticum type strain (Z-7288) - Sikorski_2010_Stand.Genomic.Sci_3_57
Author(s) : Sikorski J , Lapidus A , Chertkov O , Lucas S , Copeland A , Glavina Del Rio T , Nolan M , Tice H , Cheng JF , Han C , Brambilla E , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Bruce D , Detter C , Tapia R , Goodwin L , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Goker M , Spring S , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 3 :57 , 2010
PubMedID: 21304692
Gene_locus related to this paper: aceaz-d9qsg6 , aceaz-d9qqr0

Title : Complete genome sequence of Desulfohalobium retbaense type strain (HR(100)) - Spring_2010_Stand.Genomic.Sci_2_38
Author(s) : Spring S , Nolan M , Lapidus A , Glavina Del Rio T , Copeland A , Tice H , Cheng JF , Lucas S , Land M , Chen F , Bruce D , Goodwin L , Pitluck S , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Hauser L , Chang YJ , Jeffries CD , Munk C , Kiss H , Chain P , Han C , Brettin T , Detter JC , Schuler E , Goker M , Rohde M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 2 :38 , 2010
PubMedID: 21304676
Gene_locus related to this paper: sphtd-d1c5v2

Title : Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034) - Glavina_2010_Stand.Genomic.Sci_2_87
Author(s) : Glavina Del Rio T , Abt B , Spring S , Lapidus A , Nolan M , Tice H , Copeland A , Cheng JF , Chen F , Bruce D , Goodwin L , Pitluck S , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Saunders E , Detter JC , Brettin T , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lucas S
Ref : Stand Genomic Sci , 2 :87 , 2010
PubMedID: 21304681
Gene_locus related to this paper: chipd-c7pkc8

Title : Complete genome sequence of the photosynthetic purple nonsulfur bacterium Rhodobacter capsulatus SB 1003 - Strnad_2010_J.Bacteriol_192_3545
Author(s) : Strnad H , Lapidus A , Paces J , Ulbrich P , Vlcek C , Paces V , Haselkorn R
Ref : Journal of Bacteriology , 192 :3545 , 2010
PubMedID: 20418398
Gene_locus related to this paper: achxa-e3hx77 , rhoca-bchO , rhoca-PHAC , rhocb-d5akf6 , rhocb-d5ap20 , rhocb-d5al14 , rhocb-d5alc0 , rhocb-d5arh6

Title : The complete multipartite genome sequence of Cupriavidus necator JMP134, a versatile pollutant degrader - Lykidis_2010_PLoS.One_5_e9729
Author(s) : Lykidis A , Perez-Pantoja D , Ledger T , Mavromatis K , Anderson IJ , Ivanova NN , Hooper SD , Lapidus A , Lucas S , Gonzalez B , Kyrpides NC
Ref : PLoS ONE , 5 :e9729 , 2010
PubMedID: 20339589
Gene_locus related to this paper: cupnj-hboh

Title : Complete genome sequence of Sebaldella termitidis type strain (NCTC 11300) - Harmon-Smith_2010_Stand.Genomic.Sci_2_220
Author(s) : Harmon-Smith M , Celia L , Chertkov O , Lapidus A , Copeland A , Glavina Del Rio T , Nolan M , Lucas S , Tice H , Cheng JF , Han C , Detter JC , Bruce D , Goodwin L , Pitluck S , Pati A , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Brettin T , Goker M , Beck B , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Chen F
Ref : Stand Genomic Sci , 2 :220 , 2010
PubMedID: 21304705
Gene_locus related to this paper: sebte-d1am65

Title : Complete genome sequence of Thermocrinis albus type strain (HI 11\/12) - Wirth_2010_Stand.Genomic.Sci_2_194
Author(s) : Wirth R , Sikorski J , Brambilla E , Misra M , Lapidus A , Copeland A , Nolan M , Lucas S , Chen F , Tice H , Cheng JF , Han C , Detter JC , Tapia R , Bruce D , Goodwin L , Pitluck S , Pati A , Anderson I , Ivanova N , Mavromatis K , Mikhailova N , Chen A , Palaniappan K , Bilek Y , Hader T , Land M , Hauser L , Chang YJ , Jeffries CD , Tindall BJ , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 2 :194 , 2010
PubMedID: 21304702
Gene_locus related to this paper: theah-d3smz6

Title : Complete genome sequence of Thermosphaera aggregans type strain (M11TL) - Spring_2010_Stand.Genomic.Sci_2_245
Author(s) : Spring S , Rachel R , Lapidus A , Davenport K , Tice H , Copeland A , Cheng JF , Lucas S , Chen F , Nolan M , Bruce D , Goodwin L , Pitluck S , Ivanova N , Mavromatis K , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CC , Brettin T , Detter JC , Tapia R , Han C , Heimerl T , Weikl F , Brambilla E , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 2 :245 , 2010
PubMedID: 21304709
Gene_locus related to this paper: theam-d5u0z4

Title : Complete genome sequence of Brachyspira murdochii type strain (56-150) - Pati_2010_Stand.Genomic.Sci_2_260
Author(s) : Pati A , Sikorski J , Gronow S , Munk C , Lapidus A , Copeland A , Glavina Del Tio T , Nolan M , Lucas S , Chen F , Tice H , Cheng JF , Han C , Detter JC , Bruce D , Tapia R , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Spring S , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 2 :260 , 2010
PubMedID: 21304710
Gene_locus related to this paper: bram5-d5u3y5 , bram5-d5u7a7 , bram5-d5u9f8 , bram5-d5ua75 , bram5-d5u886

Title : Complete genome sequence of Gordonia bronchialis type strain (3410) - Ivanova_2010_Stand.Genomic.Sci_2_19
Author(s) : Ivanova N , Sikorski J , Jando M , Lapidus A , Nolan M , Lucas S , Del Rio TG , Tice H , Copeland A , Cheng JF , Chen F , Bruce D , Goodwin L , Pitluck S , Mavromatis K , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Saunders E , Han C , Detter JC , Brettin T , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC
Ref : Stand Genomic Sci , 2 :19 , 2010
PubMedID: 21304674
Gene_locus related to this paper: gorb4-d0lfd8

Title : Complete genome sequence of Methanoplanus petrolearius type strain (SEBR 4847) - Brambilla_2010_Stand.Genomic.Sci_3_203
Author(s) : Brambilla E , Djao OD , Daligault H , Lapidus A , Lucas S , Hammon N , Nolan M , Tice H , Cheng JF , Han C , Tapia R , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Spring S , Sikorski J , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 3 :203 , 2010
PubMedID: 21304750
Gene_locus related to this paper: metp4-e1rj85 , metp4-e1rk92 , metp4-e1ree0

Title : Complete genome sequence of Conexibacter woesei type strain (ID131577) - Pukall_2010_Stand.Genomic.Sci_2_212
Author(s) : Pukall R , Lapidus A , Glavina Del Rio T , Copeland A , Tice H , Cheng JF , Lucas S , Chen F , Nolan M , Bruce D , Goodwin L , Pitluck S , Mavromatis K , Ivanova N , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Meincke L , Sims D , Brettin T , Detter JC , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Kyrpides NC , Klenk HP , Hugenholtz P
Ref : Stand Genomic Sci , 2 :212 , 2010
PubMedID: 21304704
Gene_locus related to this paper: conwi-d3fc89

Title : Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460) - Kiss_2010_Stand.Genomic.Sci_2_270
Author(s) : Kiss H , Lang E , Lapidus A , Copeland A , Nolan M , Glavina Del Rio T , Chen F , Lucas S , Tice H , Cheng JF , Han C , Goodwin L , Pitluck S , Liolios K , Pati A , Ivanova N , Mavromatis K , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Detter JC , Brettin T , Spring S , Rohde M , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 2 :270 , 2010
PubMedID: 21304711
Gene_locus related to this paper: dena2-d4h2g2 , dena2-d4h260

Title : Genome sequence of the obligate methanotroph Methylosinus trichosporium strain OB3b - Stein_2010_J.Bacteriol_192_6497
Author(s) : Stein LY , Yoon S , Semrau JD , DiSpirito AA , Crombie A , Murrell JC , Vuilleumier S , Kalyuzhnaya MG , Op den Camp HJ , Bringel F , Bruce D , Cheng JF , Copeland A , Goodwin L , Han S , Hauser L , Jetten MS , Lajus A , Land ML , Lapidus A , Lucas S , Medigue C , Pitluck S , Woyke T , Zeytun A , Klotz MG
Ref : Journal of Bacteriology , 192 :6497 , 2010
PubMedID: 20952571
Gene_locus related to this paper: mettr-d5qk82 , mettr-d5qqb3 , mettr-d5qrl9

Title : Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509) - Sun_2010_Stand.Genomic.Sci_3_325
Author(s) : Sun H , Lapidus A , Nolan M , Lucas S , Del Rio TG , Tice H , Cheng JF , Tapia R , Han C , Goodwin L , Pitluck S , Pagani I , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Djao OD , Rohde M , Sikorski J , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 3 :325 , 2010
PubMedID: 21304737
Gene_locus related to this paper: nocdd-d7auf1 , nocdd-d7avl6 , nocdd-d7b2j7 , nocdd-d7b3b3 , nocdd-d7b6l9 , nocdd-d7b210 , nocdd-d7b279 , nocdd-d7b3k0 , nocdd-d7awb2

Title : Complete genome sequence of Desulfarculus baarsii type strain (2st14) - Sun_2010_Stand.Genomic.Sci_3_276
Author(s) : Sun H , Spring S , Lapidus A , Davenport K , Del Rio TG , Tice H , Nolan M , Copeland A , Cheng JF , Lucas S , Tapia R , Goodwin L , Pitluck S , Ivanova N , Pagani I , Mavromatis K , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Hauser L , Chang YJ , Jeffries CD , Detter JC , Han C , Rohde M , Brambilla E , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Land M
Ref : Stand Genomic Sci , 3 :276 , 2010
PubMedID: 21304732
Gene_locus related to this paper: desb2-e1qfv0 , desb2-e1qiq4 , desb2-e1qd85

Title : Complete genome sequence of Halomicrobium mukohataei type strain (arg-2) - Tindall_2009_Stand.Genomic.Sci_1_270
Author(s) : Tindall BJ , Schneider S , Lapidus A , Copeland A , Glavina Del Rio T , Nolan M , Lucas S , Chen F , Tice H , Cheng JF , Saunders E , Bruce D , Goodwin L , Pitluck S , Mikhailova N , Pati A , Ivanova N , Mavrommatis K , Chen A , Palaniappan K , Chain P , Land M , Hauser L , Chang YJ , Jeffries CD , Brettin T , Han C , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC , Detter JC
Ref : Stand Genomic Sci , 1 :270 , 2009
PubMedID: 21304667
Gene_locus related to this paper: halmd-c7nwe5 , halmd-c7nwh2 , halmd-c7p0c0 , halmd-c7p2d1 , halmd-c7p3m9

Title : Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii - Mavromatis_2009_PLoS.One_4_e4192
Author(s) : Mavromatis K , Ivanova N , Anderson I , Lykidis A , Hooper SD , Sun H , Kunin V , Lapidus A , Hugenholtz P , Patel B , Kyrpides NC
Ref : PLoS ONE , 4 :e4192 , 2009
PubMedID: 19145256
Gene_locus related to this paper: haloh-b8cwa6 , haloh-b8czv0

Title : Complete genome sequence of Halorhabdus utahensis type strain (AX-2) - Anderson_2009_Stand.Genomic.Sci_1_218
Author(s) : Anderson I , Tindall BJ , Pomrenke H , Goker M , Lapidus A , Nolan M , Copeland A , Glavina Del Rio T , Chen F , Tice H , Cheng JF , Lucas S , Chertkov O , Bruce D , Brettin T , Detter JC , Han C , Goodwin L , Land M , Hauser L , Chang YJ , Jeffries CD , Pitluck S , Pati A , Mavromatis K , Ivanova N , Ovchinnikova G , Chen A , Palaniappan K , Chain P , Rohde M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 1 :218 , 2009
PubMedID: 21304660
Gene_locus related to this paper: halud-c7npq6 , halud-c7npw0 , halud-c7nsl4 , halud-c7nut6 , halud-c7npw2

Title : Complete genome sequence of Cryptobacterium curtum type strain (12-3) - Mavrommatis_2009_Stand.Genomic.Sci_1_93
Author(s) : Mavrommatis K , Pukall R , Rohde C , Chen F , Sims D , Brettin T , Kuske C , Detter JC , Han C , Lapidus A , Copeland A , Glavina Del Rio T , Nolan M , Lucas S , Tice H , Cheng JF , Bruce D , Goodwin L , Pitluck S , Ovchinnikova G , Pati A , Ivanova N , Chen A , Palaniappan K , Chain P , D'Haeseleer P , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Rohde M , Klenk HP , Kyrpides NC
Ref : Stand Genomic Sci , 1 :93 , 2009
PubMedID: 21304644

Title : Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1) - Pukall_2009_Stand.Genomic.Sci_1_234
Author(s) : Pukall R , Lapidus A , Nolan M , Copeland A , Glavina Del Rio T , Lucas S , Chen F , Tice H , Cheng JF , Chertkov O , Bruce D , Goodwin L , Kuske C , Brettin T , Detter JC , Han C , Pitluck S , Pati A , Mavrommatis K , Ivanova N , Ovchinnikova G , Chen A , Palaniappan K , Schneider S , Rohde M , Chain P , D'Haeseleer P , Goker M , Bristow J , Eisen JA , Markowitz V , Kyrpides NC , Klenk HP , Hugenholtz P
Ref : Stand Genomic Sci , 1 :234 , 2009
PubMedID: 21304663
Gene_locus related to this paper: slahd-c7n2q9 , slahd-c7n5g8 , slahd-c7n8d3 , slahd-c7n116 , slahd-c7n1y7 , slahd-c7n5i5 , slahd-c7n6x8 , slahd-c7n8a4 , slahd-c7n2t9

Title : The genomic basis of trophic strategy in marine bacteria - Lauro_2009_Proc.Natl.Acad.Sci.U.S.A_106_15527
Author(s) : Lauro FM , McDougald D , Thomas T , Williams TJ , Egan S , Rice S , DeMaere MZ , Ting L , Ertan H , Johnson J , Ferriera S , Lapidus A , Anderson I , Kyrpides N , Munk AC , Detter C , Han CS , Brown MV , Robb FT , Kjelleberg S , Cavicchioli R
Ref : Proc Natl Acad Sci U S A , 106 :15527 , 2009
PubMedID: 19805210
Gene_locus related to this paper: phoas-q1zm99 , phoas-q1zpt1 , phoas-q1zwh7 , phoas-q1zx01 , phoas-q1zlj9 , sphal-q1grs6

Title : Complete genome sequence of Rhodothermus marinus type strain (R-10) - Nolan_2009_Stand.Genomic.Sci_1_283
Author(s) : Nolan M , Tindall BJ , Pomrenke H , Lapidus A , Copeland A , Glavina Del Rio T , Lucas S , Chen F , Tice H , Cheng JF , Saunders E , Han C , Bruce D , Goodwin L , Chain P , Pitluck S , Ovchinikova G , Pati A , Ivanova N , Mavromatis K , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Brettin T , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Detter JC
Ref : Stand Genomic Sci , 1 :283 , 2009
PubMedID: 21304669
Gene_locus related to this paper: rhom4-d0mhy8 , rhom4-d0mg25 , rhom4-d0mhd2 , rhom4-d0mhw6

Title : Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICP) - Clum_2009_Stand.Genomic.Sci_1_38
Author(s) : Clum A , Nolan M , Lang E , Glavina Del Rio T , Tice H , Copeland A , Cheng JF , Lucas S , Chen F , Bruce D , Goodwin L , Pitluck S , Ivanova N , Mavrommatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Goker M , Spring S , Land M , Hauser L , Chang YJ , Jeffries CC , Chain P , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A
Ref : Stand Genomic Sci , 1 :38 , 2009
PubMedID: 21304635
Gene_locus related to this paper: acifd-c7m0l6 , acifd-c7m0z1 , acifd-c7m1g1 , acifd-c7m1p7

Title : Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255) - Saunders_2009_Stand.Genomic.Sci_1_174
Author(s) : Saunders E , Pukall R , Abt B , Lapidus A , Glavina Del Rio T , Copeland A , Tice H , Cheng JF , Lucas S , Chen F , Nolan M , Bruce D , Goodwin L , Pitluck S , Ivanova N , Mavromatis K , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Meincke L , Sims D , Brettin T , Detter JC , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Han C
Ref : Stand Genomic Sci , 1 :174 , 2009
PubMedID: 21304654
Gene_locus related to this paper: eggle-c8wmc6 , eggle-c8wpb6

Title : Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134) - Pukall_2009_Stand.Genomic.Sci_1_262
Author(s) : Pukall R , Gehrich-Schroter G , Lapidus A , Nolan M , Glavina Del Rio T , Lucas S , Chen F , Tice H , Pitluck S , Cheng JF , Copeland A , Saunders E , Brettin T , Detter JC , Bruce D , Goodwin L , Pati A , Ivanova N , Mavromatis K , Ovchinnikova G , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Han C
Ref : Stand Genomic Sci , 1 :262 , 2009
PubMedID: 21304666
Gene_locus related to this paper: jondd-c7qz27 , jondd-c7qza6 , jondd-c7r0s6 , jondd-c7r2p4 , jondd-c7r2s4 , jondd-c7r5f7 , jondd-c7r044 , jondd-c7r128 , jondd-c7r357

Title : The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota - Anderson_2009_BMC.Genomics_10_145
Author(s) : Anderson IJ , Dharmarajan L , Rodriguez J , Hooper S , Porat I , Ulrich LE , Elkins JG , Mavromatis K , Sun H , Land M , Lapidus A , Lucas S , Barry K , Huber H , Zhulin IB , Whitman WB , Mukhopadhyay B , Woese C , Bristow J , Kyrpides N
Ref : BMC Genomics , 10 :145 , 2009
PubMedID: 19341479

Title : Complete genome sequence of Methanoculleus marisnigri Romesser et al. 1981 type strain JR1 - Anderson_2009_Stand.Genomic.Sci_1_189
Author(s) : Anderson IJ , Sieprawska-Lupa M , Lapidus A , Nolan M , Copeland A , Glavina Del Rio T , Tice H , Dalin E , Barry K , Saunders E , Han C , Brettin T , Detter JC , Bruce D , Mikhailova N , Pitluck S , Hauser L , Land M , Lucas S , Richardson P , Whitman WB , Kyrpides NC
Ref : Stand Genomic Sci , 1 :189 , 2009
PubMedID: 21304656

Title : Complete genome sequence of Staphylothermus marinus Stetter and Fiala 1986 type strain F1 - Anderson_2009_Stand.Genomic.Sci_1_183
Author(s) : Anderson IJ , Sun H , Lapidus A , Copeland A , Glavina Del Rio T , Tice H , Dalin E , Lucas S , Barry K , Land M , Richardson P , Huber H , Kyrpides NC
Ref : Stand Genomic Sci , 1 :183 , 2009
PubMedID: 21304655

Title : Complete genome sequence of Atopobium parvulum type strain (IPP 1246) - Copeland_2009_Stand.Genomic.Sci_1_166
Author(s) : Copeland A , Sikorski J , Lapidus A , Nolan M , Del Rio TG , Lucas S , Chen F , Tice H , Pitluck S , Cheng JF , Pukall R , Chertkov O , Brettin T , Han C , Detter JC , Kuske C , Bruce D , Goodwin L , Ivanova N , Mavromatis K , Mikhailova N , Chen A , Palaniappan K , Chain P , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 1 :166 , 2009
PubMedID: 21304653
Gene_locus related to this paper: atopd-c8w7b9 , atopd-c8w7c0 , atopd-c8w7k9 , atopd-c8w886

Title : Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10) - Lapidus_2009_Stand.Genomic.Sci_1_3
Author(s) : Lapidus A , Pukall R , Labuttii K , Copeland A , Del Rio TG , Nolan M , Chen F , Lucas S , Tice H , Cheng JF , Bruce D , Goodwin L , Pitluck S , Rohde M , Goker M , Pati A , Ivanova N , Mavrommatis K , Chen A , Palaniappan K , D'Haeseleer P , Chain P , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 1 :3 , 2009
PubMedID: 21304631
Gene_locus related to this paper: brafd-c7maj6 , brafd-c7mb43 , brafd-c7mc54 , brafd-c7mcf0 , brafd-c7mfs9 , brafd-c7mfx9 , brafd-c7mg22 , brafd-c7mbr0 , brafd-c7mi27 , brafd-c7mhn6

Title : Complete genome sequence of Leptotrichia buccalis type strain (C-1013-b) - Ivanova_2009_Stand.Genomic.Sci_1_126
Author(s) : Ivanova N , Gronow S , Lapidus A , Copeland A , Glavina Del Rio T , Nolan M , Lucas S , Chen F , Tice H , Cheng JF , Saunders E , Bruce D , Goodwin L , Brettin T , Detter JC , Han C , Pitluck S , Mikhailova N , Pati A , Mavrommatis K , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Rohde C , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 1 :126 , 2009
PubMedID: 21304648
Gene_locus related to this paper: lepbd-c7naa9 , lepbd-c7nay1 , lepbd-c7ncm7

Title : Complete genome sequence of Anaerococcus prevotii type strain (PC1) - Labutti_2009_Stand.Genomic.Sci_1_159
Author(s) : LaButti K , Pukall R , Steenblock K , Glavina Del Rio T , Tice H , Copeland A , Cheng JF , Lucas S , Chen F , Nolan M , Bruce D , Goodwin L , Pitluck S , Ivanova N , Mavromatis K , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Saunders E , Brettin T , Detter JC , Han C , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A
Ref : Stand Genomic Sci , 1 :159 , 2009
PubMedID: 21304652
Gene_locus related to this paper: anapd-c7ri43

Title : Genomic analysis of Elusimicrobium minutum, the first cultivated representative of the phylum Elusimicrobia (formerly termite group 1) - Herlemann_2009_Appl.Environ.Microbiol_75_2841
Author(s) : Herlemann DP , Geissinger O , Ikeda-Ohtsubo W , Kunin V , Sun H , Lapidus A , Hugenholtz P , Brune A
Ref : Applied Environmental Microbiology , 75 :2841 , 2009
PubMedID: 19270133

Title : Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis - McBride_2009_Appl.Environ.Microbiol_75_6864
Author(s) : McBride MJ , Xie G , Martens EC , Lapidus A , Henrissat B , Rhodes RG , Goltsman E , Wang W , Xu J , Hunnicutt DW , Staroscik AM , Hoover TR , Cheng YQ , Stein JL
Ref : Applied Environmental Microbiology , 75 :6864 , 2009
PubMedID: 19717629
Gene_locus related to this paper: flaj1-a5fb12 , flaj1-a5fmd7 , flaj1-a5fns3

Title : Complete genome sequence of Kytococcus sedentarius type strain (541) - Sims_2009_Stand.Genomic.Sci_1_12
Author(s) : Sims D , Brettin T , Detter JC , Han C , Lapidus A , Copeland A , Glavina Del Rio T , Nolan M , Chen F , Lucas S , Tice H , Cheng JF , Bruce D , Goodwin L , Pitluck S , Ovchinnikova G , Pati A , Ivanova N , Mavrommatis K , Chen A , Palaniappan K , D'Haeseleer P , Chain P , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Schneider S , Goker M , Pukall R , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 1 :12 , 2009
PubMedID: 21304632
Gene_locus related to this paper: kytsd-c7nfq8 , kytsd-c7nib9 , kytsd-c7niy9 , kytsd-c7nl26 , kytsd-c7nj46 , kytsd-c7nig1

Title : Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides - McMurdie_2009_PLoS.Genet_5_e1000714
Author(s) : McMurdie PJ , Behrens SF , Muller JA , Goke J , Ritalahti KM , Wagner R , Goltsman E , Lapidus A , Holmes S , Loffler FE , Spormann AM
Ref : PLoS Genet , 5 :e1000714 , 2009
PubMedID: 19893622
Gene_locus related to this paper: dehm1-q3z8f3 , dehmv-d2bg80

Title : Complete genome sequence of Methanocorpusculum labreanum type strain Z - Anderson_2009_Stand.Genomic.Sci_1_197
Author(s) : Anderson IJ , Sieprawska-Lupa M , Goltsman E , Lapidus A , Copeland A , Glavina Del Rio T , Tice H , Dalin E , Barry K , Pitluck S , Hauser L , Land M , Lucas S , Richardson P , Whitman WB , Kyrpides NC
Ref : Stand Genomic Sci , 1 :197 , 2009
PubMedID: 21304657
Gene_locus related to this paper: metlz-a2sqw3 , metlz-a2su60 , metlz-a2su61 , metlz-a2su62

Title : Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845) - Mavrommatis_2009_Stand.Genomic.Sci_1_101
Author(s) : Mavrommatis K , Gronow S , Saunders E , Land M , Lapidus A , Copeland A , Glavina Del Rio T , Nolan M , Lucas S , Chen F , Tice H , Cheng JF , Bruce D , Goodwin L , Pitluck S , Pati A , Ivanova N , Chen A , Palaniappan K , Chain P , Hauser L , Chang YJ , Jeffries CD , Brettin T , Detter JC , Han C , Bristow J , Goker M , Rohde M , Eisen JA , Markowitz V , Kyrpides NC , Klenk HP , Hugenholtz P
Ref : Stand Genomic Sci , 1 :101 , 2009
PubMedID: 21304645
Gene_locus related to this paper: capgi-c2m6q0 , capod-c7m434 , capod-c7m7m0 , capod-c7m8e1 , capod-c7m590 , capoc-e4mus7

Title : Complete genome sequence of Streptobacillus moniliformis type strain (9901) - Nolan_2009_Stand.Genomic.Sci_1_300
Author(s) : Nolan M , Gronow S , Lapidus A , Ivanova N , Copeland A , Lucas S , Del Rio TG , Chen F , Tice H , Pitluck S , Cheng JF , Sims D , Meincke L , Bruce D , Goodwin L , Brettin T , Han C , Detter JC , Ovchinikova G , Pati A , Mavromatis K , Mikhailova N , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Sproer C , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Chain P
Ref : Stand Genomic Sci , 1 :300 , 2009
PubMedID: 21304670
Gene_locus related to this paper: strm9-d1ayq9 , strm9-d1avt1

Title : Complete genome sequence of Catenulispora acidiphila type strain (ID 139908) - Copeland_2009_Stand.Genomic.Sci_1_119
Author(s) : Copeland A , Lapidus A , Glavina Del Rio T , Nolan M , Lucas S , Chen F , Tice H , Cheng JF , Bruce D , Goodwin L , Pitluck S , Mikhailova N , Pati A , Ivanova N , Mavromatis K , Chen A , Palaniappan K , Chain P , Land M , Hauser L , Chang YJ , Jeffries CD , Chertkov O , Brettin T , Detter JC , Han C , Ali Z , Tindall BJ , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 1 :119 , 2009
PubMedID: 21304647
Gene_locus related to this paper: catad-c7pvc2 , catad-c7pvf9 , catad-c7pwm0 , catad-c7pwp0 , catad-c7pws9 , catad-c7pxh4 , catad-c7py99 , catad-c7pyw2 , catad-c7pz32 , catad-c7pz91 , catad-c7pze9 , catad-c7pzn0 , catad-c7q0c0 , catad-c7q0r2 , catad-c7q1d2 , catad-c7q1l8 , catad-c7q3r3 , catad-c7q3t4 , catad-c7q4e4 , catad-c7q5v1 , catad-c7q6u5 , catad-c7q6u8 , catad-c7q7m3 , catad-c7q7s8 , catad-c7q8l0 , catad-c7q8u5 , catad-c7q8y2 , catad-c7q9c0 , catad-c7q209 , catad-c7q740 , catad-c7q940 , catad-c7q983 , catad-c7qam3 , catad-c7qam5 , catad-c7qam7 , catad-c7qat2 , catad-c7qav4 , catad-c7qc64 , catad-c7qdc4 , catad-c7qds2 , catad-c7qdv2 , catad-c7qe72 , catad-c7qed5 , catad-c7qfj4 , catad-c7qfu6 , catad-c7qg26 , catad-c7qgn7 , catad-c7qh87 , catad-c7qh95 , catad-c7qi49 , catad-c7qi50 , catad-c7qib3 , catad-c7qju9 , catad-c7q631 , catad-c7pzc9 , catad-c7pw02 , catad-c7pvj4 , catad-c7q6w1 , catad-c7q7k2 , catad-c7q329

Title : Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575) - Spring_2009_Stand.Genomic.Sci_1_242
Author(s) : Spring S , Lapidus A , Schroder M , Gleim D , Sims D , Meincke L , Glavina Del Rio T , Tice H , Copeland A , Cheng JF , Lucas S , Chen F , Nolan M , Bruce D , Goodwin L , Pitluck S , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Saunders E , Brettin T , Detter JC , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Han C
Ref : Stand Genomic Sci , 1 :242 , 2009
PubMedID: 21304664
Gene_locus related to this paper: desas-c8vw82 , desas-c8vxd2

Title : Complete genome sequence of Desulfomicrobium baculatum type strain (X) - Copeland_2009_Stand.Genomic.Sci_1_29
Author(s) : Copeland A , Spring S , Goker M , Schneider S , Lapidus A , Del Rio TG , Tice H , Cheng JF , Chen F , Nolan M , Bruce D , Goodwin L , Pitluck S , Ivanova N , Mavrommatis K , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CC , Meincke L , Sims D , Brettin T , Detter JC , Han C , Chain P , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lucas S
Ref : Stand Genomic Sci , 1 :29 , 2009
PubMedID: 21304634
Gene_locus related to this paper: desbd-c7ln23 , desbd-c7lrc0 , desbd-c7lw38 , desbd-c7ls17

Title : Genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans - Sievert_2008_Appl.Environ.Microbiol_74_1145
Author(s) : Sievert SM , Scott KM , Klotz MG , Chain PS , Hauser LJ , Hemp J , Hugler M , Land M , Lapidus A , Larimer FW , Lucas S , Malfatti SA , Meyer F , Paulsen IT , Ren Q , Simon J
Ref : Applied Environmental Microbiology , 74 :1145 , 2008
PubMedID: 18065616
Gene_locus related to this paper: suldn-q30ua6 , suldn-q30rs9

Title : Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction - Anderson_2008_J.Bacteriol_190_2957
Author(s) : Anderson I , Rodriguez J , Susanti D , Porat I , Reich C , Ulrich LE , Elkins JG , Mavromatis K , Lykidis A , Kim E , Thompson LS , Nolan M , Land M , Copeland A , Lapidus A , Lucas S , Detter C , Zhulin IB , Olsen GJ , Whitman W , Mukhopadhyay B , Bristow J , Kyrpides N
Ref : Journal of Bacteriology , 190 :2957 , 2008
PubMedID: 18263724
Gene_locus related to this paper: thepd-a1s004

Title : A korarchaeal genome reveals insights into the evolution of the Archaea - Elkins_2008_Proc.Natl.Acad.Sci.U.S.A_105_8102
Author(s) : Elkins JG , Podar M , Graham DE , Makarova KS , Wolf Y , Randau L , Hedlund BP , Brochier-Armanet C , Kunin V , Anderson I , Lapidus A , Goltsman E , Barry K , Koonin EV , Hugenholtz P , Kyrpides N , Wanner G , Richardson P , Keller M , Stetter KO
Ref : Proc Natl Acad Sci U S A , 105 :8102 , 2008
PubMedID: 18535141

Title : The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome - Sela_2008_Proc.Natl.Acad.Sci.U.S.A_105_18964
Author(s) : Sela DA , Chapman J , Adeuya A , Kim JH , Chen F , Whitehead TR , Lapidus A , Rokhsar DS , Lebrilla CB , German JB , Price NP , Richardson PM , Mills DA
Ref : Proc Natl Acad Sci U S A , 105 :18964 , 2008
PubMedID: 19033196
Gene_locus related to this paper: bifli-c2gxu7 , biflo-BL0073 , biflo-BL0336 , biflo-BL0581 , biflo-BL0582 , biflo-BL0787 , biflo-BL0807 , biflo-BL1514 , biflo-PTRB , bifln-c2gtr2

Title : Genome sequence and analysis of the soil cellulolytic actinomycete Thermobifida fusca YX - Lykidis_2007_J.Bacteriol_189_2477
Author(s) : Lykidis A , Mavromatis K , Ivanova N , Anderson I , Land M , DiBartolo G , Martinez M , Lapidus A , Lucas S , Copeland A , Richardson P , Wilson DB , Kyrpides N
Ref : Journal of Bacteriology , 189 :2477 , 2007
PubMedID: 17209016
Gene_locus related to this paper: thefu-q6a0i3 , thefy-q47l17 , thefy-q47p38 , thefy-q47pm5

Title : Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography - Normand_2007_Genome.Res_17_7
Author(s) : Normand P , Lapierre P , Tisa LS , Gogarten JP , Alloisio N , Bagnarol E , Bassi CA , Berry AM , Bickhart DM , Choisne N , Couloux A , Cournoyer B , Cruveiller S , Daubin V , Demange N , Francino MP , Goltsman E , Huang Y , Kopp OR , Labarre L , Lapidus A , Lavire C , Marechal J , Martinez M , Mastronunzio JE , Mullin BC , Niemann J , Pujic P , Rawnsley T , Rouy Z , Schenowitz C , Sellstedt A , Tavares F , Tomkins JP , Vallenet D , Valverde C , Wall LG , Wang Y , Medigue C , Benson DR
Ref : Genome Res , 17 :7 , 2007
PubMedID: 17151343
Gene_locus related to this paper: frasn-a8leg3 , fraaa-q0rau9 , fraaa-q0rbj9 , fraaa-q0rc03 , fraaa-q0rc89 , fraaa-q0rci1 , fraaa-q0rdx4 , fraaa-q0ref4 , fraaa-q0rel4 , fraaa-q0req5 , fraaa-q0rev2 , fraaa-q0rfl4 , fraaa-q0rfz5 , fraaa-q0rhz6 , fraaa-q0rjm3 , fraaa-q0rjt2 , fraaa-q0rkm8 , fraaa-q0rkv5 , fraaa-q0rl43 , fraaa-q0rlp9 , fraaa-q0rm04 , fraaa-q0rmn2 , fraaa-q0rmz5 , fraaa-q0rqg7 , fraaa-q0rr69 , fraaa-q0rrm7 , fraaa-q0rs07 , fraaa-q0rt07 , fraaa-q0rt55 , fraaa-q0rt70 , fraaa-q0rt91 , fraaa-q0rtc4 , fraaa-q0rte4 , fraaa-q0rtv2 , fraaa-q0rum6 , frasc-q2j5v5 , frasc-q2j8e6 , frasc-q2jct6 , frasn-a8kx42 , frasn-a8kyp2 , frasn-A8L0F8 , frasn-a8l0g7 , frasn-a8l1j7 , frasn-a8l1t9 , frasn-a8l4h8 , frasn-a8l7f8 , frasn-a8l8i4 , frasn-a8l8k8 , frasn-a8l9e9 , frasn-a8l051 , frasn-a8l115 , frasn-a8l161 , frasn-a8l265 , frasn-a8l268 , frasn-a8l720 , frasn-a8l745 , frasn-a8l755 , frasn-a8l875 , frasn-a8lab3 , frasn-a8lag3 , frasn-a8lb99 , frasn-a8lbd8 , frasn-a8lbj7 , frasn-a8lbj8 , frasn-a8lby7 , frasn-a8ldb7 , frasn-a8ldd0 , frasn-a8le91 , frasn-a8leg6 , frasn-a8leq6 , frasn-a8let0 , frasn-a8lf43 , frasn-a8lfg3 , frasn-a8lfl1 , frasn-a8lgw1 , frasn-a8lgy1 , frasc-q2j553 , frasn-a8l2m3 , fraaa-q0rd38 , frasc-q2j6h2 , frasn-a8lfl3 , frasn-a8leg7 , frasn-a8l5b8 , fraaa-q0rgz4 , fraaa-q0rtv3 , frasn-a8le98 , frasn-a8leb4