Title : Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds - Hwang_2016_Genome.Announc_4_e01226 |
Author(s) : Hwang C , Copeland A , Lucas S , Lapidus A , Barry K , Detter JC , Glavina Del Rio T , Hammon N , Israni S , Dalin E , Tice H , Pitluck S , Chertkov O , Brettin T , Bruce D , Han C , Schmutz J , Larimer F , Land ML , Hauser L , Kyrpides N , Mikhailova N , Ye Q , Zhou J , Richardson P , Fields MW |
Ref : Genome Announc , 4 : , 2016 |
Abstract : |
PubMedSearch : Hwang_2016_Genome.Announc_4_e01226 |
PubMedID: 27811105 |
Gene_locus related to this paper: alkmq-a6tu78 |
Title : Genomic sequences of six botulinum neurotoxin-producing strains representing three clostridial species illustrate the mobility and diversity of botulinum neurotoxin genes - Smith_2015_Infect.Genet.Evol_30_102 |
Author(s) : Smith TJ , Hill KK , Xie G , Foley BT , Williamson CH , Foster JT , Johnson SL , Chertkov O , Teshima H , Gibbons HS , Johnsky LA , Karavis MA , Smith LA |
Ref : Infect Genet Evol , 30 :102 , 2015 |
Abstract : |
PubMedSearch : Smith_2015_Infect.Genet.Evol_30_102 |
PubMedID: 25489752 |
Gene_locus related to this paper: 9clot-a0a0c1u9k6 |
Title : Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome - Fitzsimons_2013_Genome.Res_23_878 |
Author(s) : Fitzsimons MS , Novotny M , Lo CC , Dichosa AE , Yee-Greenbaum JL , Snook JP , Gu W , Chertkov O , Davenport KW , McMurry K , Reitenga KG , Daughton AR , He J , Johnson SL , Gleasner CD , Wills PL , Parson-Quintana B , Chain PS , Detter JC , Lasken RS , Han CS |
Ref : Genome Res , 23 :878 , 2013 |
Abstract : |
PubMedSearch : Fitzsimons_2013_Genome.Res_23_878 |
PubMedID: 23493677 |
Gene_locus related to this paper: 9stre-k0zi65 |
Title : Complete Genome Sequence of Bacillus thuringiensis Serovar Israelensis Strain HD-789 - Doggett_2013_Genome.Announc_1_e01023 |
Author(s) : Doggett NA , Stubben CJ , Chertkov O , Bruce DC , Detter JC , Johnson SL , Han CS |
Ref : Genome Announc , 1 : , 2013 |
Abstract : |
PubMedSearch : Doggett_2013_Genome.Announc_1_e01023 |
PubMedID: 24309743 |
Gene_locus related to this paper: bacce-BC2171 , bacce-BC2337 , bacce-BC4102 |
Title : Genomic comparison of Escherichia coli O104:H4 isolates from 2009 and 2011 reveals plasmid, and prophage heterogeneity, including shiga toxin encoding phage stx2 - Ahmed_2012_PLoS.One_7_e48228 |
Author(s) : Ahmed SA , Awosika J , Baldwin C , Bishop-Lilly KA , Biswas B , Broomall S , Chain PS , Chertkov O , Chokoshvili O , Coyne S , Davenport K , Detter JC , Dorman W , Erkkila TH , Folster JP , Frey KG , George M , Gleasner C , Henry M , Hill KK , Hubbard K , Insalaco J , Johnson S , Kitzmiller A , Krepps M , Lo CC , Luu T , McNew LA , Minogue T , Munk CA , Osborne B , Patel M , Reitenga KG , Rosenzweig CN , Shea A , Shen X , Strockbine N , Tarr C , Teshima H , van Gieson E , Verratti K , Wolcott M , Xie G , Sozhamannan S , Gibbons HS |
Ref : PLoS ONE , 7 :e48228 , 2012 |
Abstract : |
PubMedSearch : Ahmed_2012_PLoS.One_7_e48228 |
PubMedID: 23133618 |
Gene_locus related to this paper: ecoli-MCMK , ecoli-ycfp , ecoli-yqia , ecoli-YfhR |
Title : Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1(T)) - Han_2012_Stand.Genomic.Sci_6_94 |
Author(s) : Han C , Kotsyurbenko O , Chertkov O , Held B , Lapidus A , Nolan M , Lucas S , Hammon N , Deshpande S , Cheng JF , Tapia R , Goodwin LA , Pitluck S , Liolios K , Pagani I , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Brambilla EM , Rohde M , Spring S , Sikorski J , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Detter JC |
Ref : Stand Genomic Sci , 6 :94 , 2012 |
Abstract : |
PubMedSearch : Han_2012_Stand.Genomic.Sci_6_94 |
PubMedID: 22675602 |
Gene_locus related to this paper: sulky-e4u307 |
Title : Complete genome sequence of Serratia plymuthica strain AS12 - Neupane_2012_Stand.Genomic.Sci_6_165 |
Author(s) : Neupane S , Finlay RD , Alstrom S , Goodwin L , Kyrpides NC , Lucas S , Lapidus A , Bruce D , Pitluck S , Peters L , Ovchinnikova G , Chertkov O , Han J , Han C , Tapia R , Detter JC , Land M , Hauser L , Cheng JF , Ivanova N , Pagani I , Klenk HP , Woyke T , Hogberg N |
Ref : Stand Genomic Sci , 6 :165 , 2012 |
Abstract : |
PubMedSearch : Neupane_2012_Stand.Genomic.Sci_6_165 |
PubMedID: 22768360 |
Gene_locus related to this paper: serpl-s0ae95 , serpl-s0aiv6 , sersa-g0bfi6 , serpl-i3aik7 , serpl-s4yi15 |
Title : Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park - Mead_2012_Stand.Genomic.Sci_6_381 |
Author(s) : Mead DA , Lucas S , Copeland A , Lapidus A , Cheng JF , Bruce DC , Goodwin LA , Pitluck S , Chertkov O , Zhang X , Detter JC , Han CS , Tapia R , Land M , Hauser LJ , Chang YJ , Kyrpides NC , Ivanova NN , Ovchinnikova G , Woyke T , Brumm C , Hochstein R , Schoenfeld T , Brumm P |
Ref : Stand Genomic Sci , 6 :381 , 2012 |
Abstract : |
PubMedSearch : Mead_2012_Stand.Genomic.Sci_6_381 |
PubMedID: 23408395 |
Gene_locus related to this paper: geos4-d3efm9 |
Title : Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1) - Mavromatis_2012_Stand.Genomic.Sci_6_210 |
Author(s) : Mavromatis K , Chertkov O , Lapidus A , Nolan M , Lucas S , Tice H , Del Rio TG , Cheng JF , Han C , Tapia R , Bruce D , Goodwin LA , Pitluck S , Huntemann M , Liolios K , Pagani I , Ivanova N , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Brambilla EM , Rohde M , Spring S , Goker M , Detter JC , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Woyke T |
Ref : Stand Genomic Sci , 6 :210 , 2012 |
Abstract : |
PubMedSearch : Mavromatis_2012_Stand.Genomic.Sci_6_210 |
PubMedID: 22768364 |
Gene_locus related to this paper: sapgl-h6kz52 , 9bact-j0p3n9 |
Title : Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010 - Klenk_2011_Stand.Genomic.Sci_5_121 |
Author(s) : Klenk HP , Lapidus A , Chertkov O , Copeland A , Del Rio TG , Nolan M , Lucas S , Chen F , Tice H , Cheng JF , Han C , Bruce D , Goodwin L , Pitluck S , Pati A , Ivanova N , Mavromatis K , Daum C , Chen A , Palaniappan K , Chang YJ , Land M , Hauser L , Jeffries CD , Detter JC , Rohde M , Abt B , Pukall R , Goker M , Bristow J , Markowitz V , Hugenholtz P , Eisen JA |
Ref : Stand Genomic Sci , 5 :121 , 2011 |
Abstract : |
PubMedSearch : Klenk_2011_Stand.Genomic.Sci_5_121 |
PubMedID: 22180816 |
Title : Complete genome sequence of Marivirga tractuosa type strain (H-43) - Pagani_2011_Stand.Genomic.Sci_4_154 |
Author(s) : Pagani I , Chertkov O , Lapidus A , Lucas S , Del Rio TG , Tice H , Copeland A , Cheng JF , Nolan M , Saunders E , Pitluck S , Held B , Goodwin L , Liolios K , Ovchinikova G , Ivanova N , Mavromatis K , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Jeffries CD , Detter JC , Han C , Tapia R , Ngatchou-Djao OD , Rohde M , Goker M , Spring S , Sikorski J , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC |
Ref : Stand Genomic Sci , 4 :154 , 2011 |
Abstract : |
PubMedSearch : Pagani_2011_Stand.Genomic.Sci_4_154 |
PubMedID: 21677852 |
Gene_locus related to this paper: marth-e4tt12 |
Title : Complete genome sequence of Lactobacillus buchneri NRRL B-30929, a novel strain from a commercial ethanol plant - Liu_2011_J.Bacteriol_193_4019 |
Author(s) : Liu S , Leathers TD , Copeland A , Chertkov O , Goodwin L , Mills DA |
Ref : Journal of Bacteriology , 193 :4019 , 2011 |
Abstract : |
PubMedSearch : Liu_2011_J.Bacteriol_193_4019 |
PubMedID: 21622751 |
Title : Genome sequence of Pedosphaera parvula Ellin514, an aerobic Verrucomicrobial isolate from pasture soil - Kant_2011_J.Bacteriol_193_2900 |
Author(s) : Kant R , van Passel MW , Sangwan P , Palva A , Lucas S , Copeland A , Lapidus A , Glavina Del Rio T , Dalin E , Tice H , Bruce D , Goodwin L , Pitluck S , Chertkov O , Larimer FW , Land ML , Hauser L , Brettin TS , Detter JC , Han S , de Vos WM , Janssen PH , Smidt H |
Ref : Journal of Bacteriology , 193 :2900 , 2011 |
Abstract : |
PubMedSearch : Kant_2011_J.Bacteriol_193_2900 |
PubMedID: 21460084 |
Gene_locus related to this paper: 9bact-b9xah7.1 , 9bact-b9xah7.2 , 9bact-b9xba2 , 9bact-b9xfz4 , 9bact-b9xh19 , 9bact-b9xhn8 , 9bact-b9xj62 , 9bact-b9xjh1 , 9bact-b9xku6 , 9bact-b9xku8 , 9bact-b9xnx1 , 9bact-b9xp64 , 9bact-b9xp74 |
Title : Complete genome sequence of the anaerobic, halophilic alkalithermophile Natranaerobius thermophilus JW\/NM-WN-LF - Zhao_2011_J.Bacteriol_193_4023 |
Author(s) : Zhao B , Mesbah NM , Dalin E , Goodwin L , Nolan M , Pitluck S , Chertkov O , Brettin TS , Han J , Larimer FW , Land ML , Hauser L , Kyrpides N , Wiegel J |
Ref : Journal of Bacteriology , 193 :4023 , 2011 |
Abstract : |
PubMedSearch : Zhao_2011_J.Bacteriol_193_4023 |
PubMedID: 21642468 |
Gene_locus related to this paper: nattj-b2a7i3 |
Title : Complete Genome Sequence of a thermotolerant sporogenic lactic acid bacterium, Bacillus coagulans strain 36D1 - Rhee_2011_Stand.Genomic.Sci_5_331 |
Author(s) : Rhee MS , Moritz BE , Xie G , Glavina Del Rio T , Dalin E , Tice H , Bruce D , Goodwin L , Chertkov O , Brettin T , Han C , Detter C , Pitluck S , Land ML , Patel M , Ou M , Harbrucker R , Ingram LO , Shanmugam KT |
Ref : Stand Genomic Sci , 5 :331 , 2011 |
Abstract : |
PubMedSearch : Rhee_2011_Stand.Genomic.Sci_5_331 |
PubMedID: 22675583 |
Gene_locus related to this paper: bacco-c1p801 , bacco-g2tqg6 |
Title : Genome sequence of the mercury-methylating strain Desulfovibrio desulfuricans ND132 - Brown_2011_J.Bacteriol_193_2078 |
Author(s) : Brown SD , Gilmour CC , Kucken AM , Wall JD , Elias DA , Brandt CC , Podar M , Chertkov O , Held B , Bruce DC , Detter JC , Tapia R , Han CS , Goodwin LA , Cheng JF , Pitluck S , Woyke T , Mikhailova N , Ivanova NN , Han J , Lucas S , Lapidus AL , Land ML , Hauser LJ , Palumbo AV |
Ref : Journal of Bacteriology , 193 :2078 , 2011 |
Abstract : |
PubMedSearch : Brown_2011_J.Bacteriol_193_2078 |
PubMedID: 21357488 |
Gene_locus related to this paper: desde-f0jku0 |
Title : Complete genome sequence of the filamentous anoxygenic phototrophic bacterium Chloroflexus aurantiacus - Tang_2011_BMC.Genomics_12_334 |
Author(s) : Tang KH , Barry K , Chertkov O , Dalin E , Han CS , Hauser LJ , Honchak BM , Karbach LE , Land ML , Lapidus A , Larimer FW , Mikhailova N , Pitluck S , Pierson BK , Blankenship RE |
Ref : BMC Genomics , 12 :334 , 2011 |
Abstract : |
PubMedSearch : Tang_2011_BMC.Genomics_12_334 |
PubMedID: 21714912 |
Gene_locus related to this paper: chlaa-a9we32 |
Title : Complete genome of the cellulolytic ruminal bacterium Ruminococcus albus 7 - Suen_2011_J.Bacteriol_193_5574 |
Author(s) : Suen G , Stevenson DM , Bruce DC , Chertkov O , Copeland A , Cheng JF , Detter C , Detter JC , Goodwin LA , Han CS , Hauser LJ , Ivanova NN , Kyrpides NC , Land ML , Lapidus A , Lucas S , Ovchinnikova G , Pitluck S , Tapia R , Woyke T , Boyum J , Mead D , Weimer PJ |
Ref : Journal of Bacteriology , 193 :5574 , 2011 |
Abstract : |
PubMedSearch : Suen_2011_J.Bacteriol_193_5574 |
PubMedID: 21914885 |
Gene_locus related to this paper: ruma7-e6ujm0 , ruma7-e6ukm6 , rumal-a0a011v2q8 , ruma7-e6ukb2 |
Title : Complete genome sequence of Desulfobulbus propionicus type strain (1pr3) - Pagani_2011_Stand.Genomic.Sci_4_100 |
Author(s) : Pagani I , Lapidus A , Nolan M , Lucas S , Hammon N , Deshpande S , Cheng JF , Chertkov O , Davenport K , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Mavromatis K , Ivanova N , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Detter JC , Brambilla E , Kannan KP , Djao OD , Rohde M , Pukall R , Spring S , Goker M , Sikorski J , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP |
Ref : Stand Genomic Sci , 4 :100 , 2011 |
Abstract : |
PubMedSearch : Pagani_2011_Stand.Genomic.Sci_4_100 |
PubMedID: 21475592 |
Gene_locus related to this paper: despd-e8rdj0 , despd-e8rjl1 |
Title : Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21) - Chang_2011_Stand.Genomic.Sci_5_97 |
Author(s) : Chang YJ , Land M , Hauser L , Chertkov O , Del Rio TG , Nolan M , Copeland A , Tice H , Cheng JF , Lucas S , Han C , Goodwin L , Pitluck S , Ivanova N , Ovchinikova G , Pati A , Chen A , Palaniappan K , Mavromatis K , Liolios K , Brettin T , Fiebig A , Rohde M , Abt B , Goker M , Detter JC , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A |
Ref : Stand Genomic Sci , 5 :97 , 2011 |
Abstract : |
PubMedSearch : Chang_2011_Stand.Genomic.Sci_5_97 |
PubMedID: 22180814 |
Gene_locus related to this paper: 9chlr-d6ttv1 , 9chlr-d6thn5 , 9chlr-d6tk73 , 9chlr-d6tzq4 , 9chlr-d6tri7 , 9chlr-d6tuz4 , 9chlr-d6tri9 , 9chlr-d6tsy5 , 9chlr-d6u5k6 , 9chlr-d6u6a8 , 9chlr-d6tye6 , 9chlr-d6tpj9 |
Title : Genome sequence of the 1,4-dioxane-degrading Pseudonocardia dioxanivorans strain CB1190 - Sales_2011_J.Bacteriol_193_4549 |
Author(s) : Sales CM , Mahendra S , Grostern A , Parales RE , Goodwin LA , Woyke T , Nolan M , Lapidus A , Chertkov O , Ovchinnikova G , Sczyrba A , Alvarez-Cohen L |
Ref : Journal of Bacteriology , 193 :4549 , 2011 |
Abstract : |
PubMedSearch : Sales_2011_J.Bacteriol_193_4549 |
PubMedID: 21725009 |
Gene_locus related to this paper: 9pseu-f4ck55 , 9pseu-f4cxt1 , pseux-f4cs60 , pseux-f4cva7 , pseux-f4czc7 , pseux-f4czf1 , pseux-f4czh4 , pseux-f4crs9 , pseux-f4cs44 , pseux-f4cw88 , pseux-f4cxn4 |
Title : Complete genome sequence of Aminobacterium colombiense type strain (ALA-1) - Chertkov_2010_Stand.Genomic.Sci_2_280 |
Author(s) : Chertkov O , Sikorski J , Brambilla E , Lapidus A , Copeland A , Glavina Del Rio T , Nolan M , Lucas S , Tice H , Cheng JF , Han C , Detter JC , Bruce D , Tapia R , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Spring S , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP |
Ref : Stand Genomic Sci , 2 :280 , 2010 |
Abstract : |
PubMedSearch : Chertkov_2010_Stand.Genomic.Sci_2_280 |
PubMedID: 21304712 |
Title : Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07) - Foster_2010_Stand.Genomic.Sci_2_1 |
Author(s) : Foster B , Pukall R , Abt B , Nolan M , Glavina Del Rio T , Chen F , Lucas S , Tice H , Pitluck S , Cheng JF , Chertkov O , Brettin T , Han C , Detter JC , Bruce D , Goodwin L , Ivanova N , Mavromatis K , Pati A , Mikhailova N , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A |
Ref : Stand Genomic Sci , 2 :1 , 2010 |
Abstract : |
PubMedSearch : Foster_2010_Stand.Genomic.Sci_2_1 |
PubMedID: 21304672 |
Title : Complete genome sequence of Arcobacter nitrofigilis type strain (CI) - Pati_2010_Stand.Genomic.Sci_2_300 |
Author(s) : Pati A , Gronow S , Lapidus A , Copeland A , Glavina Del Rio T , Nolan M , Lucas S , Tice H , Cheng JF , Han C , Chertkov O , Bruce D , Tapia R , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Detter JC , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC |
Ref : Stand Genomic Sci , 2 :300 , 2010 |
Abstract : |
PubMedSearch : Pati_2010_Stand.Genomic.Sci_2_300 |
PubMedID: 21304714 |
Gene_locus related to this paper: arcnc-d5v0e6 , arcnc-d5v643 |
Title : Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA) - Mavromatis_2010_Stand.Genomic.Sci_2_9 |
Author(s) : Mavromatis K , Sikorski J , Lapidus A , Glavina Del Rio T , Copeland A , Tice H , Cheng JF , Lucas S , Chen F , Nolan M , Bruce D , Goodwin L , Pitluck S , Ivanova N , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Meincke L , Sims D , Chertkov O , Han C , Brettin T , Detter JC , Wahrenburg C , Rohde M , Pukall R , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC |
Ref : Stand Genomic Sci , 2 :9 , 2010 |
Abstract : |
PubMedSearch : Mavromatis_2010_Stand.Genomic.Sci_2_9 |
PubMedID: 21304673 |
Title : Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1) - Sikorski_2010_Stand.Genomic.Sci_3_304 |
Author(s) : Sikorski J , Chertkov O , Lapidus A , Nolan M , Lucas S , Del Rio TG , Tice H , Cheng JF , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Brambilla E , Yasawong M , Rohde M , Pukall R , Spring S , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP |
Ref : Stand Genomic Sci , 3 :304 , 2010 |
Abstract : |
PubMedSearch : Sikorski_2010_Stand.Genomic.Sci_3_304 |
PubMedID: 21304735 |
Title : Complete genome sequence of Archaeoglobus profundus type strain (AV18) - von Jan_2010_Stand.Genomic.Sci_2_327 |
Author(s) : von Jan M , Lapidus A , Del Rio TG , Copeland A , Tice H , Cheng JF , Lucas S , Chen F , Nolan M , Goodwin L , Han C , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Ovchinnikova G , Chertkov O , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Saunders E , Brettin T , Detter JC , Chain P , Eichinger K , Huber H , Spring S , Rohde M , Goker M , Wirth R , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP |
Ref : Stand Genomic Sci , 2 :327 , 2010 |
Abstract : |
PubMedSearch : von Jan_2010_Stand.Genomic.Sci_2_327 |
PubMedID: 21304717 |
Title : Complete genome sequence of Spirochaeta smaragdinae type strain (SEBR 4228) - Mavromatis_2010_Stand.Genomic.Sci_3_136 |
Author(s) : Mavromatis K , Yasawong M , Chertkov O , Lapidus A , Lucas S , Nolan M , Del Rio TG , Tice H , Cheng JF , Pitluck S , Liolios K , Ivanova N , Tapia R , Han C , Bruce D , Goodwin L , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Detter JC , Rohde M , Brambilla E , Spring S , Goker M , Sikorski J , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC |
Ref : Stand Genomic Sci , 3 :136 , 2010 |
Abstract : |
PubMedSearch : Mavromatis_2010_Stand.Genomic.Sci_3_136 |
PubMedID: 21304743 |
Gene_locus related to this paper: spiss-e1r584 , spiss-e1rce8 |
Title : Complete genome sequence of Sebaldella termitidis type strain (NCTC 11300) - Harmon-Smith_2010_Stand.Genomic.Sci_2_220 |
Author(s) : Harmon-Smith M , Celia L , Chertkov O , Lapidus A , Copeland A , Glavina Del Rio T , Nolan M , Lucas S , Tice H , Cheng JF , Han C , Detter JC , Bruce D , Goodwin L , Pitluck S , Pati A , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Brettin T , Goker M , Beck B , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Chen F |
Ref : Stand Genomic Sci , 2 :220 , 2010 |
Abstract : |
PubMedSearch : Harmon-Smith_2010_Stand.Genomic.Sci_2_220 |
PubMedID: 21304705 |
Gene_locus related to this paper: sebte-d1am65 |
Title : Whole genome sequences of two Xylella fastidiosa strains (M12 and M23) causing almond leaf scorch disease in California - Chen_2010_J.Bacteriol_192_4534 |
Author(s) : Chen J , Xie G , Han S , Chertkov O , Sims D , Civerolo EL |
Ref : Journal of Bacteriology , 192 :4534 , 2010 |
Abstract : |
PubMedSearch : Chen_2010_J.Bacteriol_192_4534 |
PubMedID: 20601474 |
Gene_locus related to this paper: xylfa-cxest , xylfa-metx , xylfa-pip , xylfa-XF0015 , xylfa-XF1029 , xylfa-XF1253 , xylfa-XF1282 , xylfa-XF1356 , xylfa-XF2330 , xylfa-XF2551 |
Title : Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3) - Pitluck_2010_Stand.Genomic.Sci_3_285 |
Author(s) : Pitluck S , Yasawong M , Held B , Lapidus A , Nolan M , Copeland A , Lucas S , Del Rio TG , Tice H , Cheng JF , Chertkov O , Goodwin L , Tapia R , Han C , Liolios K , Ivanova N , Mavromatis K , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Pukall R , Spring S , Rohde M , Sikorski J , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP |
Ref : Stand Genomic Sci , 3 :285 , 2010 |
Abstract : |
PubMedSearch : Pitluck_2010_Stand.Genomic.Sci_3_285 |
PubMedID: 21304733 |
Gene_locus related to this paper: 9bact-e3cyn3 |
Title : Complete genome sequence of Intrasporangium calvum type strain (7 KIP) - Del Rio_2010_Stand.Genomic.Sci_3_294 |
Author(s) : Del Rio TG , Chertkov O , Yasawong M , Lucas S , Deshpande S , Cheng JF , Detter C , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Pukall R , Sikorski J , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A |
Ref : Stand Genomic Sci , 3 :294 , 2010 |
Abstract : |
PubMedSearch : Del Rio_2010_Stand.Genomic.Sci_3_294 |
PubMedID: 21304734 |
Gene_locus related to this paper: intc7-e6s7p7 , intc7-e6s9d8 , intc7-e6sds3 , intc7-e6s7a1 , intc7-e6sc55 |
Title : Complete genome sequence of Acetohalobium arabaticum type strain (Z-7288) - Sikorski_2010_Stand.Genomic.Sci_3_57 |
Author(s) : Sikorski J , Lapidus A , Chertkov O , Lucas S , Copeland A , Glavina Del Rio T , Nolan M , Tice H , Cheng JF , Han C , Brambilla E , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Bruce D , Detter C , Tapia R , Goodwin L , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Goker M , Spring S , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP |
Ref : Stand Genomic Sci , 3 :57 , 2010 |
Abstract : |
PubMedSearch : Sikorski_2010_Stand.Genomic.Sci_3_57 |
PubMedID: 21304692 |
Gene_locus related to this paper: aceaz-d9qsg6 , aceaz-d9qqr0 |
Title : Complete genome sequence of Methanothermus fervidus type strain (V24S) - Anderson_2010_Stand.Genomic.Sci_3_315 |
Author(s) : Anderson I , Djao OD , Misra M , Chertkov O , Nolan M , Lucas S , Lapidus A , Del Rio TG , Tice H , Cheng JF , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Brambilla E , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Sikorski J , Spring S , Rohde M , Eichinger K , Huber H , Wirth R , Goker M , Detter JC , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC |
Ref : Stand Genomic Sci , 3 :315 , 2010 |
Abstract : |
PubMedSearch : Anderson_2010_Stand.Genomic.Sci_3_315 |
PubMedID: 21304736 |
Title : Complete genome sequence of Halorhabdus utahensis type strain (AX-2) - Anderson_2009_Stand.Genomic.Sci_1_218 |
Author(s) : Anderson I , Tindall BJ , Pomrenke H , Goker M , Lapidus A , Nolan M , Copeland A , Glavina Del Rio T , Chen F , Tice H , Cheng JF , Lucas S , Chertkov O , Bruce D , Brettin T , Detter JC , Han C , Goodwin L , Land M , Hauser L , Chang YJ , Jeffries CD , Pitluck S , Pati A , Mavromatis K , Ivanova N , Ovchinnikova G , Chen A , Palaniappan K , Chain P , Rohde M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP |
Ref : Stand Genomic Sci , 1 :218 , 2009 |
Abstract : |
PubMedSearch : Anderson_2009_Stand.Genomic.Sci_1_218 |
PubMedID: 21304660 |
Gene_locus related to this paper: halud-c7npq6 , halud-c7npw0 , halud-c7nsl4 , halud-c7nut6 , halud-c7npw2 |
Title : Complete genome sequence of Atopobium parvulum type strain (IPP 1246) - Copeland_2009_Stand.Genomic.Sci_1_166 |
Author(s) : Copeland A , Sikorski J , Lapidus A , Nolan M , Del Rio TG , Lucas S , Chen F , Tice H , Pitluck S , Cheng JF , Pukall R , Chertkov O , Brettin T , Han C , Detter JC , Kuske C , Bruce D , Goodwin L , Ivanova N , Mavromatis K , Mikhailova N , Chen A , Palaniappan K , Chain P , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP |
Ref : Stand Genomic Sci , 1 :166 , 2009 |
Abstract : |
PubMedSearch : Copeland_2009_Stand.Genomic.Sci_1_166 |
PubMedID: 21304653 |
Gene_locus related to this paper: atopd-c8w7b9 , atopd-c8w7c0 , atopd-c8w7k9 , atopd-c8w886 |
Title : Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3) - Han_2009_Stand.Genomic.Sci_1_54 |
Author(s) : Han C , Spring S , Lapidus A , Del Rio TG , Tice H , Copeland A , Cheng JF , Lucas S , Chen F , Nolan M , Bruce D , Goodwin L , Pitluck S , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CC , Saunders E , Chertkov O , Brettin T , Goker M , Rohde M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Detter JC |
Ref : Stand Genomic Sci , 1 :54 , 2009 |
Abstract : |
PubMedSearch : Han_2009_Stand.Genomic.Sci_1_54 |
PubMedID: 21304637 |
Gene_locus related to this paper: pedhd-c6xsb2 , pedhd-c6xtc2 , pedhd-c6xtt3 , pedhd-c6xwf3 , pedhd-c6xzk8 , pedhd-c6y3i4 , pedhd-c6y3z2 , pedhd-c6y041 , pedhd-c6y150 , pedhd-c6xze4 , pedhd-c6xze5 , pedhd-c6y111 |
Title : Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1) - Pukall_2009_Stand.Genomic.Sci_1_234 |
Author(s) : Pukall R , Lapidus A , Nolan M , Copeland A , Glavina Del Rio T , Lucas S , Chen F , Tice H , Cheng JF , Chertkov O , Bruce D , Goodwin L , Kuske C , Brettin T , Detter JC , Han C , Pitluck S , Pati A , Mavrommatis K , Ivanova N , Ovchinnikova G , Chen A , Palaniappan K , Schneider S , Rohde M , Chain P , D'Haeseleer P , Goker M , Bristow J , Eisen JA , Markowitz V , Kyrpides NC , Klenk HP , Hugenholtz P |
Ref : Stand Genomic Sci , 1 :234 , 2009 |
Abstract : |
PubMedSearch : Pukall_2009_Stand.Genomic.Sci_1_234 |
PubMedID: 21304663 |
Gene_locus related to this paper: slahd-c7n2q9 , slahd-c7n5g8 , slahd-c7n8d3 , slahd-c7n116 , slahd-c7n1y7 , slahd-c7n5i5 , slahd-c7n6x8 , slahd-c7n8a4 , slahd-c7n2t9 |
Title : Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae - Chun_2009_Proc.Natl.Acad.Sci.U.S.A_106_15442 |
Author(s) : Chun J , Grim CJ , Hasan NA , Lee JH , Choi SY , Haley BJ , Taviani E , Jeon YS , Kim DW , Brettin TS , Bruce DC , Challacombe JF , Detter JC , Han CS , Munk AC , Chertkov O , Meincke L , Saunders E , Walters RA , Huq A , Nair GB , Colwell RR |
Ref : Proc Natl Acad Sci U S A , 106 :15442 , 2009 |
Abstract : |
PubMedSearch : Chun_2009_Proc.Natl.Acad.Sci.U.S.A_106_15442 |
PubMedID: 19720995 |
Gene_locus related to this paper: vibch-lipas , vibch-VC0135 , vibch-VC1418 , vibch-VC1974 , vibch-VC2432 , vibch-VC2718 , vibch-VCA0063 , vibch-VCA0490 , vibch-VCA0688 , vibch-VCA0754 , vibch-y1892 , vibch-y2276 |
Title : Complete genome sequence of Pirellula staleyi type strain (ATCC 27377) - Clum_2009_Stand.Genomic.Sci_1_308 |
Author(s) : Clum A , Tindall BJ , Sikorski J , Ivanova N , Mavrommatis K , Lucas S , Glavina T , Del R , Nolan M , Chen F , Tice H , Pitluck S , Cheng JF , Chertkov O , Brettin T , Han C , Detter JC , Kuske C , Bruce D , Goodwin L , Ovchinikova G , Pati A , Mikhailova N , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A |
Ref : Stand Genomic Sci , 1 :308 , 2009 |
Abstract : |
PubMedSearch : Clum_2009_Stand.Genomic.Sci_1_308 |
PubMedID: 21304671 |
Gene_locus related to this paper: pirsd-d2qwf7 , pirsd-d2qya4 , pirsd-d2qyh4 , pirsd-d2qyx7 , pirsd-d2r0n7 , pirsd-d2r1w6 , pirsd-d2r2c5 , pirsd-d2r2f7 , pirsd-d2r3w0 , pirsd-d2r4c3 , pirsd-d2r5t1 , pirsd-d2r9d5 , pirsd-d2r496 , pirsd-d2r881 , pirsd-d2r024 |
Title : Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii - Xie_2007_Appl.Environ.Microbiol_73_3536 |
Author(s) : Xie G , Bruce DC , Challacombe JF , Chertkov O , Detter JC , Gilna P , Han CS , Lucas S , Misra M , Myers GL , Richardson P , Tapia R , Thayer N , Thompson LS , Brettin TS , Henrissat B , Wilson DB , McBride MJ |
Ref : Applied Environmental Microbiology , 73 :3536 , 2007 |
Abstract : |
PubMedSearch : Xie_2007_Appl.Environ.Microbiol_73_3536 |
PubMedID: 17400776 |
Gene_locus related to this paper: cyth3-q11pu3 , cyth3-q11rb1 , cyth3-q11sp5 , cyth3-q11sp6 , cyth3-q11ty5 , cyth3-q11vh6 , cyth3-q11vj5 , cyth3-q11w17 , cyth3-q11xy0 |
Title : Complete genome sequence of Haemophilus somnus (Histophilus somni) strain 129Pt and comparison to Haemophilus ducreyi 35000HP and Haemophilus influenzae Rd - Challacombe_2007_J.Bacteriol_189_1890 |
Author(s) : Challacombe JF , Duncan AJ , Brettin TS , Bruce D , Chertkov O , Detter JC , Han CS , Misra M , Richardson P , Tapia R , Thayer N , Xie G , Inzana TJ |
Ref : Journal of Bacteriology , 189 :1890 , 2007 |
Abstract : |
PubMedSearch : Challacombe_2007_J.Bacteriol_189_1890 |
PubMedID: 17172329 |
Gene_locus related to this paper: haes1-q0i317 , haes1-q0i470 , haes2-b0utw7 , haes2-b0uvn0 , haes2-b0uwc2 |