Chertkov O

References (53)

Title : Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds - Hwang_2016_Genome.Announc_4_e01226
Author(s) : Hwang C , Copeland A , Lucas S , Lapidus A , Barry K , Detter JC , Glavina Del Rio T , Hammon N , Israni S , Dalin E , Tice H , Pitluck S , Chertkov O , Brettin T , Bruce D , Han C , Schmutz J , Larimer F , Land ML , Hauser L , Kyrpides N , Mikhailova N , Ye Q , Zhou J , Richardson P , Fields MW
Ref : Genome Announc , 4 : , 2016
PubMedID: 27811105
Gene_locus related to this paper: alkmq-a6tu78

Title : Genomic sequences of six botulinum neurotoxin-producing strains representing three clostridial species illustrate the mobility and diversity of botulinum neurotoxin genes - Smith_2015_Infect.Genet.Evol_30_102
Author(s) : Smith TJ , Hill KK , Xie G , Foley BT , Williamson CH , Foster JT , Johnson SL , Chertkov O , Teshima H , Gibbons HS , Johnsky LA , Karavis MA , Smith LA
Ref : Infect Genet Evol , 30 :102 , 2015
PubMedID: 25489752
Gene_locus related to this paper: 9clot-a0a0c1u9k6

Title : Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome - Fitzsimons_2013_Genome.Res_23_878
Author(s) : Fitzsimons MS , Novotny M , Lo CC , Dichosa AE , Yee-Greenbaum JL , Snook JP , Gu W , Chertkov O , Davenport KW , McMurry K , Reitenga KG , Daughton AR , He J , Johnson SL , Gleasner CD , Wills PL , Parson-Quintana B , Chain PS , Detter JC , Lasken RS , Han CS
Ref : Genome Res , 23 :878 , 2013
PubMedID: 23493677
Gene_locus related to this paper: 9stre-k0zi65

Title : Complete Genome Sequence of Bacillus thuringiensis Serovar Israelensis Strain HD-789 - Doggett_2013_Genome.Announc_1_e01023
Author(s) : Doggett NA , Stubben CJ , Chertkov O , Bruce DC , Detter JC , Johnson SL , Han CS
Ref : Genome Announc , 1 : , 2013
PubMedID: 24309743
Gene_locus related to this paper: bacce-BC2171 , bacce-BC2337 , bacce-BC4102

Title : Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park - Mead_2012_Stand.Genomic.Sci_6_381
Author(s) : Mead DA , Lucas S , Copeland A , Lapidus A , Cheng JF , Bruce DC , Goodwin LA , Pitluck S , Chertkov O , Zhang X , Detter JC , Han CS , Tapia R , Land M , Hauser LJ , Chang YJ , Kyrpides NC , Ivanova NN , Ovchinnikova G , Woyke T , Brumm C , Hochstein R , Schoenfeld T , Brumm P
Ref : Stand Genomic Sci , 6 :381 , 2012
PubMedID: 23408395
Gene_locus related to this paper: geos4-d3efm9

Title : Genomic comparison of Escherichia coli O104:H4 isolates from 2009 and 2011 reveals plasmid, and prophage heterogeneity, including shiga toxin encoding phage stx2 - Ahmed_2012_PLoS.One_7_e48228
Author(s) : Ahmed SA , Awosika J , Baldwin C , Bishop-Lilly KA , Biswas B , Broomall S , Chain PS , Chertkov O , Chokoshvili O , Coyne S , Davenport K , Detter JC , Dorman W , Erkkila TH , Folster JP , Frey KG , George M , Gleasner C , Henry M , Hill KK , Hubbard K , Insalaco J , Johnson S , Kitzmiller A , Krepps M , Lo CC , Luu T , McNew LA , Minogue T , Munk CA , Osborne B , Patel M , Reitenga KG , Rosenzweig CN , Shea A , Shen X , Strockbine N , Tarr C , Teshima H , van Gieson E , Verratti K , Wolcott M , Xie G , Sozhamannan S , Gibbons HS
Ref : PLoS ONE , 7 :e48228 , 2012
PubMedID: 23133618
Gene_locus related to this paper: ecoli-MCMK , ecoli-ycfp , ecoli-yqia , ecoli-YfhR

Title : Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1) - Mavromatis_2012_Stand.Genomic.Sci_6_210
Author(s) : Mavromatis K , Chertkov O , Lapidus A , Nolan M , Lucas S , Tice H , Del Rio TG , Cheng JF , Han C , Tapia R , Bruce D , Goodwin LA , Pitluck S , Huntemann M , Liolios K , Pagani I , Ivanova N , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Brambilla EM , Rohde M , Spring S , Goker M , Detter JC , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Woyke T
Ref : Stand Genomic Sci , 6 :210 , 2012
PubMedID: 22768364
Gene_locus related to this paper: sapgl-h6kz52 , 9bact-j0p3n9

Title : Complete genome sequence of Serratia plymuthica strain AS12 - Neupane_2012_Stand.Genomic.Sci_6_165
Author(s) : Neupane S , Finlay RD , Alstrom S , Goodwin L , Kyrpides NC , Lucas S , Lapidus A , Bruce D , Pitluck S , Peters L , Ovchinnikova G , Chertkov O , Han J , Han C , Tapia R , Detter JC , Land M , Hauser L , Cheng JF , Ivanova N , Pagani I , Klenk HP , Woyke T , Hogberg N
Ref : Stand Genomic Sci , 6 :165 , 2012
PubMedID: 22768360
Gene_locus related to this paper: serpl-s0ae95 , serpl-s0aiv6 , sersa-g0bfi6 , serpl-i3aik7 , serpl-s4yi15

Title : Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1(T)) - Han_2012_Stand.Genomic.Sci_6_94
Author(s) : Han C , Kotsyurbenko O , Chertkov O , Held B , Lapidus A , Nolan M , Lucas S , Hammon N , Deshpande S , Cheng JF , Tapia R , Goodwin LA , Pitluck S , Liolios K , Pagani I , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Brambilla EM , Rohde M , Spring S , Sikorski J , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Detter JC
Ref : Stand Genomic Sci , 6 :94 , 2012
PubMedID: 22675602
Gene_locus related to this paper: sulky-e4u307

Title : Complete genome sequence of Desulfobulbus propionicus type strain (1pr3) - Pagani_2011_Stand.Genomic.Sci_4_100
Author(s) : Pagani I , Lapidus A , Nolan M , Lucas S , Hammon N , Deshpande S , Cheng JF , Chertkov O , Davenport K , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Mavromatis K , Ivanova N , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Detter JC , Brambilla E , Kannan KP , Djao OD , Rohde M , Pukall R , Spring S , Goker M , Sikorski J , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 4 :100 , 2011
PubMedID: 21475592
Gene_locus related to this paper: despd-e8rdj0 , despd-e8rjl1

Title : Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma - Kubicek_2011_Genome.Biol_12_R40
Author(s) : Kubicek CP , Herrera-Estrella A , Seidl-Seiboth V , Martinez DA , Druzhinina IS , Thon M , Zeilinger S , Casas-Flores S , Horwitz BA , Mukherjee PK , Mukherjee M , Kredics L , Alcaraz LD , Aerts A , Antal Z , Atanasova L , Cervantes-Badillo MG , Challacombe J , Chertkov O , McCluskey K , Coulpier F , Deshpande N , von Dohren H , Ebbole DJ , Esquivel-Naranjo EU , Fekete E , Flipphi M , Glaser F , Gomez-Rodriguez EY , Gruber S , Han C , Henrissat B , Hermosa R , Hernandez-Onate M , Karaffa L , Kosti I , Le Crom S , Lindquist E , Lucas S , Lubeck M , Lubeck PS , Margeot A , Metz B , Misra M , Nevalainen H , Omann M , Packer N , Perrone G , Uresti-Rivera EE , Salamov A , Schmoll M , Seiboth B , Shapiro H , Sukno S , Tamayo-Ramos JA , Tisch D , Wiest A , Wilkinson HH , Zhang M , Coutinho PM , Kenerley CM , Monte E , Baker SE , Grigoriev IV
Ref : Genome Biol , 12 :R40 , 2011
PubMedID: 21501500
Gene_locus related to this paper: hypai-g9nem6 , hypai-g9ng36 , hypai-g9ngu2 , hypai-g9nks5 , hypai-g9nks6 , hypai-g9nqe5 , hypai-g9nqk5 , hypai-g9nrx6 , hypai-g9nsx1 , hypai-g9ntn3 , hypai-g9nzc9 , hypai-g9nzd7 , hypai-g9p1t1 , hypai-g9p1v2 , hypai-g9p2n8 , hypai-g9p4z2 , hypai-g9p878 , hypai-g9pa17 , hypai-g9pbz9 , hypvg-g9mem8 , hypvg-g9mg52 , hypvg-g9mga2 , hypvg-g9mhi3 , hypvg-g9mjc7 , hypvg-g9mk44 , hypvg-g9mms1 , hypvg-g9mnf0 , hypvg-g9mng3 , hypvg-g9mpt0 , hypvg-g9mrp9 , hypvg-g9ms16 , hypvg-g9ms32 , hypvg-g9msv5 , hypvg-g9muh6 , hypvg-g9muk0 , hypvg-g9mwe2 , hypvg-g9my79 , hypvg-g9n0p7 , hypvg-g9n2g3 , hypvg-g9n2g4 , hypvg-g9n4k5 , hypvg-g9n9n0 , hypvg-g9n561 , hypvg-g9n988 , hypvg-g9nb12 , hypvg-g9nb54 , hypvg-g9nbh8 , hypai-g9npz7 , hypai-g9njw6 , hypvg-g9mx08 , hypvg-g9mlt2 , hypai-g9p4j3 , hypvg-g9nbd3 , hypai-g9nxf6 , hypvg-g9n3y9 , hypvg-g9mgs4 , hypai-g9p6m2 , hypvg-g9my62 , hypvg-g9nbv2 , hypvg-g9my22 , hypai-g9p2e2 , hypai-g9p596 , hypai-g9nf87 , hypvg-g9me87 , hypvg-g9ndn9 , hypai-g9niy5 , hypai-g9ntx6 , hypvg-g9n3e7 , hypai-g9nu29 , hypvg-g9n2z0 , hypvg-g9ndf4 , 9hypo-a0a2p4zt82 , hypvg-g9n0g0 , hypvg-g9muj2 , hypvg-g9mud0 , hypai-g9nkx5

Title : Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010 - Klenk_2011_Stand.Genomic.Sci_5_121
Author(s) : Klenk HP , Lapidus A , Chertkov O , Copeland A , Del Rio TG , Nolan M , Lucas S , Chen F , Tice H , Cheng JF , Han C , Bruce D , Goodwin L , Pitluck S , Pati A , Ivanova N , Mavromatis K , Daum C , Chen A , Palaniappan K , Chang YJ , Land M , Hauser L , Jeffries CD , Detter JC , Rohde M , Abt B , Pukall R , Goker M , Bristow J , Markowitz V , Hugenholtz P , Eisen JA
Ref : Stand Genomic Sci , 5 :121 , 2011
PubMedID: 22180816

Title : Complete genome of the cellulolytic ruminal bacterium Ruminococcus albus 7 - Suen_2011_J.Bacteriol_193_5574
Author(s) : Suen G , Stevenson DM , Bruce DC , Chertkov O , Copeland A , Cheng JF , Detter C , Detter JC , Goodwin LA , Han CS , Hauser LJ , Ivanova NN , Kyrpides NC , Land ML , Lapidus A , Lucas S , Ovchinnikova G , Pitluck S , Tapia R , Woyke T , Boyum J , Mead D , Weimer PJ
Ref : Journal of Bacteriology , 193 :5574 , 2011
PubMedID: 21914885
Gene_locus related to this paper: ruma7-e6ujm0 , ruma7-e6ukm6 , rumal-a0a011v2q8 , ruma7-e6ukb2

Title : Genome sequence of Pedosphaera parvula Ellin514, an aerobic Verrucomicrobial isolate from pasture soil - Kant_2011_J.Bacteriol_193_2900
Author(s) : Kant R , van Passel MW , Sangwan P , Palva A , Lucas S , Copeland A , Lapidus A , Glavina Del Rio T , Dalin E , Tice H , Bruce D , Goodwin L , Pitluck S , Chertkov O , Larimer FW , Land ML , Hauser L , Brettin TS , Detter JC , Han S , de Vos WM , Janssen PH , Smidt H
Ref : Journal of Bacteriology , 193 :2900 , 2011
PubMedID: 21460084
Gene_locus related to this paper: 9bact-b9xah7.1 , 9bact-b9xah7.2 , 9bact-b9xba2 , 9bact-b9xfz4 , 9bact-b9xh19 , 9bact-b9xhn8 , 9bact-b9xj62 , 9bact-b9xjh1 , 9bact-b9xku6 , 9bact-b9xku8 , 9bact-b9xnx1 , 9bact-b9xp64 , 9bact-b9xp74

Title : Complete genome sequence of the filamentous anoxygenic phototrophic bacterium Chloroflexus aurantiacus - Tang_2011_BMC.Genomics_12_334
Author(s) : Tang KH , Barry K , Chertkov O , Dalin E , Han CS , Hauser LJ , Honchak BM , Karbach LE , Land ML , Lapidus A , Larimer FW , Mikhailova N , Pitluck S , Pierson BK , Blankenship RE
Ref : BMC Genomics , 12 :334 , 2011
PubMedID: 21714912
Gene_locus related to this paper: chlaa-a9we32

Title : Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21) - Chang_2011_Stand.Genomic.Sci_5_97
Author(s) : Chang YJ , Land M , Hauser L , Chertkov O , Del Rio TG , Nolan M , Copeland A , Tice H , Cheng JF , Lucas S , Han C , Goodwin L , Pitluck S , Ivanova N , Ovchinikova G , Pati A , Chen A , Palaniappan K , Mavromatis K , Liolios K , Brettin T , Fiebig A , Rohde M , Abt B , Goker M , Detter JC , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A
Ref : Stand Genomic Sci , 5 :97 , 2011
PubMedID: 22180814
Gene_locus related to this paper: 9chlr-d6ttv1 , 9chlr-d6thn5 , 9chlr-d6tk73 , 9chlr-d6tzq4 , 9chlr-d6tri7 , 9chlr-d6tuz4 , 9chlr-d6tri9 , 9chlr-d6tsy5 , 9chlr-d6u5k6 , 9chlr-d6u6a8 , 9chlr-d6tye6 , 9chlr-d6tpj9

Title : Complete genome sequence of Lactobacillus buchneri NRRL B-30929, a novel strain from a commercial ethanol plant - Liu_2011_J.Bacteriol_193_4019
Author(s) : Liu S , Leathers TD , Copeland A , Chertkov O , Goodwin L , Mills DA
Ref : Journal of Bacteriology , 193 :4019 , 2011
PubMedID: 21622751

Title : Genome sequence of the 1,4-dioxane-degrading Pseudonocardia dioxanivorans strain CB1190 - Sales_2011_J.Bacteriol_193_4549
Author(s) : Sales CM , Mahendra S , Grostern A , Parales RE , Goodwin LA , Woyke T , Nolan M , Lapidus A , Chertkov O , Ovchinnikova G , Sczyrba A , Alvarez-Cohen L
Ref : Journal of Bacteriology , 193 :4549 , 2011
PubMedID: 21725009
Gene_locus related to this paper: 9pseu-f4ck55 , 9pseu-f4cxt1 , pseux-f4cs60 , pseux-f4cva7 , pseux-f4czc7 , pseux-f4czf1 , pseux-f4czh4 , pseux-f4crs9 , pseux-f4cs44 , pseux-f4cw88 , pseux-f4cxn4

Title : Complete genome sequence of Marivirga tractuosa type strain (H-43) - Pagani_2011_Stand.Genomic.Sci_4_154
Author(s) : Pagani I , Chertkov O , Lapidus A , Lucas S , Del Rio TG , Tice H , Copeland A , Cheng JF , Nolan M , Saunders E , Pitluck S , Held B , Goodwin L , Liolios K , Ovchinikova G , Ivanova N , Mavromatis K , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Jeffries CD , Detter JC , Han C , Tapia R , Ngatchou-Djao OD , Rohde M , Goker M , Spring S , Sikorski J , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC
Ref : Stand Genomic Sci , 4 :154 , 2011
PubMedID: 21677852
Gene_locus related to this paper: marth-e4tt12

Title : Complete Genome Sequence of a thermotolerant sporogenic lactic acid bacterium, Bacillus coagulans strain 36D1 - Rhee_2011_Stand.Genomic.Sci_5_331
Author(s) : Rhee MS , Moritz BE , Xie G , Glavina Del Rio T , Dalin E , Tice H , Bruce D , Goodwin L , Chertkov O , Brettin T , Han C , Detter C , Pitluck S , Land ML , Patel M , Ou M , Harbrucker R , Ingram LO , Shanmugam KT
Ref : Stand Genomic Sci , 5 :331 , 2011
PubMedID: 22675583
Gene_locus related to this paper: bacco-c1p801 , bacco-g2tqg6

Title : Genome sequence of the mercury-methylating strain Desulfovibrio desulfuricans ND132 - Brown_2011_J.Bacteriol_193_2078
Author(s) : Brown SD , Gilmour CC , Kucken AM , Wall JD , Elias DA , Brandt CC , Podar M , Chertkov O , Held B , Bruce DC , Detter JC , Tapia R , Han CS , Goodwin LA , Cheng JF , Pitluck S , Woyke T , Mikhailova N , Ivanova NN , Han J , Lucas S , Lapidus AL , Land ML , Hauser LJ , Palumbo AV
Ref : Journal of Bacteriology , 193 :2078 , 2011
PubMedID: 21357488
Gene_locus related to this paper: desde-f0jku0

Title : Complete genome sequence of Methanothermus fervidus type strain (V24S) - Anderson_2010_Stand.Genomic.Sci_3_315
Author(s) : Anderson I , Djao OD , Misra M , Chertkov O , Nolan M , Lucas S , Lapidus A , Del Rio TG , Tice H , Cheng JF , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Brambilla E , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Sikorski J , Spring S , Rohde M , Eichinger K , Huber H , Wirth R , Goker M , Detter JC , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC
Ref : Stand Genomic Sci , 3 :315 , 2010
PubMedID: 21304736

Title : Complete genome sequence of Aminobacterium colombiense type strain (ALA-1) - Chertkov_2010_Stand.Genomic.Sci_2_280
Author(s) : Chertkov O , Sikorski J , Brambilla E , Lapidus A , Copeland A , Glavina Del Rio T , Nolan M , Lucas S , Tice H , Cheng JF , Han C , Detter JC , Bruce D , Tapia R , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Spring S , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 2 :280 , 2010
PubMedID: 21304712

Title : Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07) - Foster_2010_Stand.Genomic.Sci_2_1
Author(s) : Foster B , Pukall R , Abt B , Nolan M , Glavina Del Rio T , Chen F , Lucas S , Tice H , Pitluck S , Cheng JF , Chertkov O , Brettin T , Han C , Detter JC , Bruce D , Goodwin L , Ivanova N , Mavromatis K , Pati A , Mikhailova N , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A
Ref : Stand Genomic Sci , 2 :1 , 2010
PubMedID: 21304672

Title : Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA) - Mavromatis_2010_Stand.Genomic.Sci_2_9
Author(s) : Mavromatis K , Sikorski J , Lapidus A , Glavina Del Rio T , Copeland A , Tice H , Cheng JF , Lucas S , Chen F , Nolan M , Bruce D , Goodwin L , Pitluck S , Ivanova N , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Meincke L , Sims D , Chertkov O , Han C , Brettin T , Detter JC , Wahrenburg C , Rohde M , Pukall R , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC
Ref : Stand Genomic Sci , 2 :9 , 2010
PubMedID: 21304673

Title : Complete genome sequence of Intrasporangium calvum type strain (7 KIP) - Del Rio_2010_Stand.Genomic.Sci_3_294
Author(s) : Del Rio TG , Chertkov O , Yasawong M , Lucas S , Deshpande S , Cheng JF , Detter C , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Pukall R , Sikorski J , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lapidus A
Ref : Stand Genomic Sci , 3 :294 , 2010
PubMedID: 21304734
Gene_locus related to this paper: intc7-e6s7p7 , intc7-e6s9d8 , intc7-e6sds3 , intc7-e6s7a1 , intc7-e6sc55

Title : Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3) - Pitluck_2010_Stand.Genomic.Sci_3_285
Author(s) : Pitluck S , Yasawong M , Held B , Lapidus A , Nolan M , Copeland A , Lucas S , Del Rio TG , Tice H , Cheng JF , Chertkov O , Goodwin L , Tapia R , Han C , Liolios K , Ivanova N , Mavromatis K , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Pukall R , Spring S , Rohde M , Sikorski J , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 3 :285 , 2010
PubMedID: 21304733
Gene_locus related to this paper: 9bact-e3cyn3

Title : Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1) - Sikorski_2010_Stand.Genomic.Sci_3_304
Author(s) : Sikorski J , Chertkov O , Lapidus A , Nolan M , Lucas S , Del Rio TG , Tice H , Cheng JF , Tapia R , Han C , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Brambilla E , Yasawong M , Rohde M , Pukall R , Spring S , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 3 :304 , 2010
PubMedID: 21304735

Title : Complete genome sequence of Archaeoglobus profundus type strain (AV18) - von Jan_2010_Stand.Genomic.Sci_2_327
Author(s) : von Jan M , Lapidus A , Del Rio TG , Copeland A , Tice H , Cheng JF , Lucas S , Chen F , Nolan M , Goodwin L , Han C , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Ovchinnikova G , Chertkov O , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Saunders E , Brettin T , Detter JC , Chain P , Eichinger K , Huber H , Spring S , Rohde M , Goker M , Wirth R , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 2 :327 , 2010
PubMedID: 21304717

Title : Complete genome sequence of Streptosporangium roseum type strain (NI 9100) - Nolan_2010_Stand.Genomic.Sci_2_29
Author(s) : Nolan M , Sikorski J , Jando M , Lucas S , Lapidus A , Glavina Del Rio T , Chen F , Tice H , Pitluck S , Cheng JF , Chertkov O , Sims D , Meincke L , Brettin T , Han C , Detter JC , Bruce D , Goodwin L , Land M , Hauser L , Chang YJ , Jeffries CD , Ivanova N , Mavromatis K , Mikhailova N , Chen A , Palaniappan K , Chain P , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 2 :29 , 2010
PubMedID: 21304675
Gene_locus related to this paper: strrd-d2aqk6 , strrd-d2aqt5 , strrd-d2ar22 , strrd-d2ar75 , strrd-d2arp5 , strrd-d2auf6 , strrd-d2aw37 , strrd-d2awh0 , strrd-d2awp2 , strrd-d2axt7 , strrd-d2ayh4 , strrd-d2ayq3 , strrd-d2ayx8 , strrd-d2az98 , strrd-d2b0g2 , strrd-d2b0t3 , strrd-d2b0u2 , strrd-d2b0u6 , strrd-d2b0w5 , strrd-d2b2m3 , strrd-d2b2r7 , strrd-d2b3g9 , strrd-d2b3i2 , strrd-d2b3i7 , strrd-d2b4f5 , strrd-d2b4y4 , strrd-d2b4z9 , strrd-d2b5z6 , strrd-d2b6v8 , strrd-d2b6y3 , strrd-d2b7a9 , strrd-d2b7h6 , strrd-d2b9k5 , strrd-d2b9n9 , strrd-d2b152 , strrd-d2b235 , strrd-d2b519 , strrd-d2b540 , strrd-d2b638 , strrd-d2b812 , strrd-d2ba59 , strrd-d2bae6 , strrd-d2bai2 , strrd-d2bbp7 , strrd-d2bc04 , strrd-d2bc32 , strrd-d2bc93 , strrd-d2bd97 , strrd-d2bdh0 , strrd-d2bdh1 , strrd-d2bdl4 , strrd-d2bdq5 , strrd-d2bdt5 , strrd-d2bdv3 , strrd-d2be60 , strrd-d2be88 , strrd-d2bf33 , strrd-d2bf77 , strrd-d2b7c2 , strrd-d2awc2 , strrd-d2as88 , strrd-d2aw56 , strrd-d2b3r3 , strrd-d2bf75 , strrd-d2b2d4 , strrd-d2b1i6

Title : Complete genome sequence of Spirochaeta smaragdinae type strain (SEBR 4228) - Mavromatis_2010_Stand.Genomic.Sci_3_136
Author(s) : Mavromatis K , Yasawong M , Chertkov O , Lapidus A , Lucas S , Nolan M , Del Rio TG , Tice H , Cheng JF , Pitluck S , Liolios K , Ivanova N , Tapia R , Han C , Bruce D , Goodwin L , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Detter JC , Rohde M , Brambilla E , Spring S , Goker M , Sikorski J , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC
Ref : Stand Genomic Sci , 3 :136 , 2010
PubMedID: 21304743
Gene_locus related to this paper: spiss-e1r584 , spiss-e1rce8

Title : Complete genome sequence of Arcobacter nitrofigilis type strain (CI) - Pati_2010_Stand.Genomic.Sci_2_300
Author(s) : Pati A , Gronow S , Lapidus A , Copeland A , Glavina Del Rio T , Nolan M , Lucas S , Tice H , Cheng JF , Han C , Chertkov O , Bruce D , Tapia R , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Detter JC , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC
Ref : Stand Genomic Sci , 2 :300 , 2010
PubMedID: 21304714
Gene_locus related to this paper: arcnc-d5v0e6 , arcnc-d5v643

Title : Complete genome sequence of Acetohalobium arabaticum type strain (Z-7288) - Sikorski_2010_Stand.Genomic.Sci_3_57
Author(s) : Sikorski J , Lapidus A , Chertkov O , Lucas S , Copeland A , Glavina Del Rio T , Nolan M , Tice H , Cheng JF , Han C , Brambilla E , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Bruce D , Detter C , Tapia R , Goodwin L , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Goker M , Spring S , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 3 :57 , 2010
PubMedID: 21304692
Gene_locus related to this paper: aceaz-d9qsg6 , aceaz-d9qqr0

Title : Complete genome sequence of Sebaldella termitidis type strain (NCTC 11300) - Harmon-Smith_2010_Stand.Genomic.Sci_2_220
Author(s) : Harmon-Smith M , Celia L , Chertkov O , Lapidus A , Copeland A , Glavina Del Rio T , Nolan M , Lucas S , Tice H , Cheng JF , Han C , Detter JC , Bruce D , Goodwin L , Pitluck S , Pati A , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Brettin T , Goker M , Beck B , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Chen F
Ref : Stand Genomic Sci , 2 :220 , 2010
PubMedID: 21304705
Gene_locus related to this paper: sebte-d1am65

Title : Whole genome sequences of two Xylella fastidiosa strains (M12 and M23) causing almond leaf scorch disease in California - Chen_2010_J.Bacteriol_192_4534
Author(s) : Chen J , Xie G , Han S , Chertkov O , Sims D , Civerolo EL
Ref : Journal of Bacteriology , 192 :4534 , 2010
PubMedID: 20601474
Gene_locus related to this paper: xylfa-cxest , xylfa-metx , xylfa-pip , xylfa-XF0015 , xylfa-XF1029 , xylfa-XF1253 , xylfa-XF1282 , xylfa-XF1356 , xylfa-XF2330 , xylfa-XF2551

Title : Complete genome sequence of Halorhabdus utahensis type strain (AX-2) - Anderson_2009_Stand.Genomic.Sci_1_218
Author(s) : Anderson I , Tindall BJ , Pomrenke H , Goker M , Lapidus A , Nolan M , Copeland A , Glavina Del Rio T , Chen F , Tice H , Cheng JF , Lucas S , Chertkov O , Bruce D , Brettin T , Detter JC , Han C , Goodwin L , Land M , Hauser L , Chang YJ , Jeffries CD , Pitluck S , Pati A , Mavromatis K , Ivanova N , Ovchinnikova G , Chen A , Palaniappan K , Chain P , Rohde M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 1 :218 , 2009
PubMedID: 21304660
Gene_locus related to this paper: halud-c7npq6 , halud-c7npw0 , halud-c7nsl4 , halud-c7nut6 , halud-c7npw2

Title : Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1) - Pukall_2009_Stand.Genomic.Sci_1_234
Author(s) : Pukall R , Lapidus A , Nolan M , Copeland A , Glavina Del Rio T , Lucas S , Chen F , Tice H , Cheng JF , Chertkov O , Bruce D , Goodwin L , Kuske C , Brettin T , Detter JC , Han C , Pitluck S , Pati A , Mavrommatis K , Ivanova N , Ovchinnikova G , Chen A , Palaniappan K , Schneider S , Rohde M , Chain P , D'Haeseleer P , Goker M , Bristow J , Eisen JA , Markowitz V , Kyrpides NC , Klenk HP , Hugenholtz P
Ref : Stand Genomic Sci , 1 :234 , 2009
PubMedID: 21304663
Gene_locus related to this paper: slahd-c7n2q9 , slahd-c7n5g8 , slahd-c7n8d3 , slahd-c7n116 , slahd-c7n1y7 , slahd-c7n5i5 , slahd-c7n6x8 , slahd-c7n8a4 , slahd-c7n2t9

Title : Complete genome sequence of Atopobium parvulum type strain (IPP 1246) - Copeland_2009_Stand.Genomic.Sci_1_166
Author(s) : Copeland A , Sikorski J , Lapidus A , Nolan M , Del Rio TG , Lucas S , Chen F , Tice H , Pitluck S , Cheng JF , Pukall R , Chertkov O , Brettin T , Han C , Detter JC , Kuske C , Bruce D , Goodwin L , Ivanova N , Mavromatis K , Mikhailova N , Chen A , Palaniappan K , Chain P , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 1 :166 , 2009
PubMedID: 21304653
Gene_locus related to this paper: atopd-c8w7b9 , atopd-c8w7c0 , atopd-c8w7k9 , atopd-c8w886

Title : Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae - Chun_2009_Proc.Natl.Acad.Sci.U.S.A_106_15442
Author(s) : Chun J , Grim CJ , Hasan NA , Lee JH , Choi SY , Haley BJ , Taviani E , Jeon YS , Kim DW , Brettin TS , Bruce DC , Challacombe JF , Detter JC , Han CS , Munk AC , Chertkov O , Meincke L , Saunders E , Walters RA , Huq A , Nair GB , Colwell RR
Ref : Proc Natl Acad Sci U S A , 106 :15442 , 2009
PubMedID: 19720995
Gene_locus related to this paper: vibch-lipas , vibch-VC0135 , vibch-VC1418 , vibch-VC1974 , vibch-VC2432 , vibch-VC2718 , vibch-VCA0063 , vibch-VCA0490 , vibch-VCA0688 , vibch-VCA0754 , vibch-y1892 , vibch-y2276

Title : Complete genome sequence of Catenulispora acidiphila type strain (ID 139908) - Copeland_2009_Stand.Genomic.Sci_1_119
Author(s) : Copeland A , Lapidus A , Glavina Del Rio T , Nolan M , Lucas S , Chen F , Tice H , Cheng JF , Bruce D , Goodwin L , Pitluck S , Mikhailova N , Pati A , Ivanova N , Mavromatis K , Chen A , Palaniappan K , Chain P , Land M , Hauser L , Chang YJ , Jeffries CD , Chertkov O , Brettin T , Detter JC , Han C , Ali Z , Tindall BJ , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 1 :119 , 2009
PubMedID: 21304647
Gene_locus related to this paper: catad-c7pvc2 , catad-c7pvf9 , catad-c7pwm0 , catad-c7pwp0 , catad-c7pws9 , catad-c7pxh4 , catad-c7py99 , catad-c7pyw2 , catad-c7pz32 , catad-c7pz91 , catad-c7pze9 , catad-c7pzn0 , catad-c7q0c0 , catad-c7q0r2 , catad-c7q1d2 , catad-c7q1l8 , catad-c7q3r3 , catad-c7q3t4 , catad-c7q4e4 , catad-c7q5v1 , catad-c7q6u5 , catad-c7q6u8 , catad-c7q7m3 , catad-c7q7s8 , catad-c7q8l0 , catad-c7q8u5 , catad-c7q8y2 , catad-c7q9c0 , catad-c7q209 , catad-c7q740 , catad-c7q940 , catad-c7q983 , catad-c7qam3 , catad-c7qam5 , catad-c7qam7 , catad-c7qat2 , catad-c7qav4 , catad-c7qc64 , catad-c7qdc4 , catad-c7qds2 , catad-c7qdv2 , catad-c7qe72 , catad-c7qed5 , catad-c7qfj4 , catad-c7qfu6 , catad-c7qg26 , catad-c7qgn7 , catad-c7qh87 , catad-c7qh95 , catad-c7qi49 , catad-c7qi50 , catad-c7qib3 , catad-c7qju9 , catad-c7q631 , catad-c7pzc9 , catad-c7pw02 , catad-c7pvj4 , catad-c7q6w1 , catad-c7q7k2 , catad-c7q329

Title : Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii - Xie_2007_Appl.Environ.Microbiol_73_3536
Author(s) : Xie G , Bruce DC , Challacombe JF , Chertkov O , Detter JC , Gilna P , Han CS , Lucas S , Misra M , Myers GL , Richardson P , Tapia R , Thayer N , Thompson LS , Brettin TS , Henrissat B , Wilson DB , McBride MJ
Ref : Applied Environmental Microbiology , 73 :3536 , 2007
PubMedID: 17400776
Gene_locus related to this paper: cyth3-q11pu3 , cyth3-q11rb1 , cyth3-q11sp5 , cyth3-q11sp6 , cyth3-q11ty5 , cyth3-q11vh6 , cyth3-q11vj5 , cyth3-q11w17 , cyth3-q11xy0

Title : Complete genome sequence of Haemophilus somnus (Histophilus somni) strain 129Pt and comparison to Haemophilus ducreyi 35000HP and Haemophilus influenzae Rd - Challacombe_2007_J.Bacteriol_189_1890
Author(s) : Challacombe JF , Duncan AJ , Brettin TS , Bruce D , Chertkov O , Detter JC , Han CS , Misra M , Richardson P , Tapia R , Thayer N , Xie G , Inzana TJ
Ref : Journal of Bacteriology , 189 :1890 , 2007
PubMedID: 17172329
Gene_locus related to this paper: haes1-q0i317 , haes1-q0i470 , haes2-b0utw7 , haes2-b0uvn0 , haes2-b0uwc2

Title : Pathogenomic sequence analysis of Bacillus cereus and Bacillus thuringiensis isolates closely related to Bacillus anthracis - Han_2006_J.Bacteriol_188_3382
Author(s) : Han CS , Xie G , Challacombe JF , Altherr MR , Bhotika SS , Brown N , Bruce D , Campbell CS , Campbell ML , Chen J , Chertkov O , Cleland C , Dimitrijevic M , Doggett NA , Fawcett JJ , Glavina T , Goodwin LA , Green LD , Hill KK , Hitchcock P , Jackson PJ , Keim P , Kewalramani AR , Longmire J , Lucas S , Malfatti S , McMurry K , Meincke LJ , Misra M , Moseman BL , Mundt M , Munk AC , Okinaka RT , Parson-Quintana B , Reilly LP , Richardson P , Robinson DL , Rubin E , Saunders E , Tapia R , Tesmer JG , Thayer N , Thompson LS , Tice H , Ticknor LO , Wills PL , Brettin TS , Gilna P
Ref : Journal of Bacteriology , 188 :3382 , 2006
PubMedID: 16621833
Gene_locus related to this paper: bacan-BA0954 , bacan-BA2607 , bacce-BC0968 , bacce-BC3133 , bacce-BC5130 , bacce-c2mr40 , baccz-q63gk2

Title : The sequence and analysis of duplication-rich human chromosome 16 - Martin_2004_Nature_432_988
Author(s) : Martin J , Han C , Gordon LA , Terry A , Prabhakar S , She X , Xie G , Hellsten U , Chan YM , Altherr M , Couronne O , Aerts A , Bajorek E , Black S , Blumer H , Branscomb E , Brown NC , Bruno WJ , Buckingham JM , Callen DF , Campbell CS , Campbell ML , Campbell EW , Caoile C , Challacombe JF , Chasteen LA , Chertkov O , Chi HC , Christensen M , Clark LM , Cohn JD , Denys M , Detter JC , Dickson M , Dimitrijevic-Bussod M , Escobar J , Fawcett JJ , Flowers D , Fotopulos D , Glavina T , Gomez M , Gonzales E , Goodstein D , Goodwin LA , Grady DL , Grigoriev I , Groza M , Hammon N , Hawkins T , Haydu L , Hildebrand CE , Huang W , Israni S , Jett J , Jewett PB , Kadner K , Kimball H , Kobayashi A , Krawczyk MC , Leyba T , Longmire JL , Lopez F , Lou Y , Lowry S , Ludeman T , Manohar CF , Mark GA , McMurray KL , Meincke LJ , Morgan J , Moyzis RK , Mundt MO , Munk AC , Nandkeshwar RD , Pitluck S , Pollard M , Predki P , Parson-Quintana B , Ramirez L , Rash S , Retterer J , Ricke DO , Robinson DL , Rodriguez A , Salamov A , Saunders EH , Scott D , Shough T , Stallings RL , Stalvey M , Sutherland RD , Tapia R , Tesmer JG , Thayer N , Thompson LS , Tice H , Torney DC , Tran-Gyamfi M , Tsai M , Ulanovsky LE , Ustaszewska A , Vo N , White PS , Williams AL , Wills PL , Wu JR , Wu K , Yang J , DeJong P , Bruce D , Doggett NA , Deaven L , Schmutz J , Grimwood J , Richardson P , Rokhsar DS , Eichler EE , Gilna P , Lucas SM , Myers RM , Rubin EM , Pennacchio LA
Ref : Nature , 432 :988 , 2004
PubMedID: 15616553
Gene_locus related to this paper: human-CES1 , human-CES2 , human-CES3 , human-CES4A , human-CES5A