| Title : Complete genome sequence of Atopobium parvulum type strain (IPP 1246) - Copeland_2009_Stand.Genomic.Sci_1_166 |
| Author(s) : Copeland A , Sikorski J , Lapidus A , Nolan M , Del Rio TG , Lucas S , Chen F , Tice H , Pitluck S , Cheng JF , Pukall R , Chertkov O , Brettin T , Han C , Detter JC , Kuske C , Bruce D , Goodwin L , Ivanova N , Mavromatis K , Mikhailova N , Chen A , Palaniappan K , Chain P , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP |
| Ref : Stand Genomic Sci , 1 :166 , 2009 |
|
Abstract :
Atopobium parvulum (Weinberg et al. 1937) Collins and Wallbanks 1993 comb. nov. is the type strain of the species and belongs to the genomically yet unstudied Atopobium/Olsenella branch of the family Coriobacteriaceae. The species A. parvulum is of interest because its members are frequently isolated from the human oral cavity and are found to be associated with halitosis (oral malodor) but not with periodontitis. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the genus Atopobium, and the 1,543,805 bp long single replicon genome with its 1369 protein-coding and 49 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project. |
| PubMedSearch : Copeland_2009_Stand.Genomic.Sci_1_166 |
| PubMedID: 21304653 |
| Gene_locus related to this paper: atopd-c8w7b9 , atopd-c8w7c0 , atopd-c8w7k9 , atopd-c8w886 |
| Gene_locus | atopd-c8w7b9 atopd-c8w7c0 atopd-c8w7k9 atopd-c8w886 |
| Gene_locus_frgt | atopd-c8w867 |
Copeland A, Sikorski J, Lapidus A, Nolan M, Del Rio TG, Lucas S, Chen F, Tice H, Pitluck S, Cheng JF, Pukall R, Chertkov O, Brettin T, Han C, Detter JC, Kuske C, Bruce D, Goodwin L, Ivanova N, Mavromatis K, Mikhailova N, Chen A, Palaniappan K, Chain P, Rohde M, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP (2009)
Complete genome sequence of Atopobium parvulum type strain (IPP 1246)
Stand Genomic Sci
1 :166
Copeland A, Sikorski J, Lapidus A, Nolan M, Del Rio TG, Lucas S, Chen F, Tice H, Pitluck S, Cheng JF, Pukall R, Chertkov O, Brettin T, Han C, Detter JC, Kuske C, Bruce D, Goodwin L, Ivanova N, Mavromatis K, Mikhailova N, Chen A, Palaniappan K, Chain P, Rohde M, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP (2009)
Stand Genomic Sci
1 :166