Blom J

References (33)

Title : Phylogenomic resolution of the bacterial genus Pantoea and its relationship with Erwinia and Tatumella - Palmer_2017_Antonie.Van.Leeuwenhoek_110_1287
Author(s) : Palmer M , Steenkamp ET , Coetzee MPA , Chan WY , van Zyl E , De Maayer P , Coutinho TA , Blom J , Smits THM , Duffy B , Venter SN
Ref : Antonie Van Leeuwenhoek , 110 :1287 , 2017
Abstract :
PubMedSearch : Palmer_2017_Antonie.Van.Leeuwenhoek_110_1287
PubMedID: 28255640
Gene_locus related to this paper: 9gamm-a0a1x1d0a2 , 9gamm-a0a1x1d771 , pancy-a0a1x1f0f1 , pancy-a0a1x1eys8

Title : Genome Sequence of the Acute Urethral Catheter Isolate Pseudomonas aeruginosa MH38 - Wibberg_2014_Genome.Announc_2_e00161
Author(s) : Wibberg D , Tielen P , Blom J , Rosin N , Schobert M , Tupker R , Schatschneider S , Spilker D , Albersmeier A , Goesmann A , Vorholter FJ , Puhler A , Jahn D
Ref : Genome Announc , 2 : , 2014
Abstract :
PubMedSearch : Wibberg_2014_Genome.Announc_2_e00161
PubMedID: 24625869
Gene_locus related to this paper: pseae-PA3695 , pseae-q9i252

Title : Whole genome sequencing versus traditional genotyping for investigation of a Mycobacterium tuberculosis outbreak: a longitudinal molecular epidemiological study - Roetzer_2013_PLoS.Med_10_e1001387
Author(s) : Roetzer A , Diel R , Kohl TA , Ruckert C , Nubel U , Blom J , Wirth T , Jaenicke S , Schuback S , Rusch-Gerdes S , Supply P , Kalinowski J , Niemann S
Ref : PLoS Med , 10 :e1001387 , 2013
Abstract :
PubMedSearch : Roetzer_2013_PLoS.Med_10_e1001387
PubMedID: 23424287
Gene_locus related to this paper: myctu-cutas1 , myctu-RV1215C , myctu-Rv2045c

Title : Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888T as assessed by comparative genomics - Smits_2013_Syst.Appl.Microbiol_36_449
Author(s) : Smits TH , Rezzonico F , Lopez MM , Blom J , Goesmann A , Frey JE , Duffy B
Ref : Syst Appl Microbiol , 36 :449 , 2013
Abstract :
PubMedSearch : Smits_2013_Syst.Appl.Microbiol_36_449
PubMedID: 23726521
Gene_locus related to this paper: 9entr-v5z3f3 , 9entr-v5z7i6 , 9gamm-v5z8v7

Title : The noncanonical type III secretion system of Xanthomonas translucens pv. graminis is essential for forage grass infection - Wichmann_2013_Mol.Plant.Pathol_14_576
Author(s) : Wichmann F , Vorholter FJ , Hersemann L , Widmer F , Blom J , Niehaus K , Reinhard S , Conradin C , Kolliker R
Ref : Mol Plant Pathol , 14 :576 , 2013
Abstract :
PubMedSearch : Wichmann_2013_Mol.Plant.Pathol_14_576
PubMedID: 23578314
Gene_locus related to this paper: xanct-l0syy5 , xanct-k8zjb9

Title : Complete Genome Sequence of Corynebacterium urealyticum Strain DSM 7111, Isolated from a 9-Year-Old Patient with Alkaline-Encrusted Cystitis - Guimaraes_2013_Genome.Announc_1_e00264
Author(s) : Guimaraes LC , Soares SC , Albersmeier A , Blom J , Jaenicke S , Azevedo V , Soriano F , Tauch A , Trost E
Ref : Genome Announc , 1 :e00264 , 2013
Abstract :
PubMedSearch : Guimaraes_2013_Genome.Announc_1_e00264
PubMedID: 23704183
Gene_locus related to this paper: coru7-b1vhm7

Title : Genome sequence of the bacterium Streptomyces davawensis JCM 4913 and heterologous production of the unique antibiotic roseoflavin - Jankowitsch_2012_J.Bacteriol_194_6818
Author(s) : Jankowitsch F , Schwarz J , Ruckert C , Gust B , Szczepanowski R , Blom J , Pelzer S , Kalinowski J , Mack M
Ref : Journal of Bacteriology , 194 :6818 , 2012
Abstract :
PubMedSearch : Jankowitsch_2012_J.Bacteriol_194_6818
PubMedID: 23043000
Gene_locus related to this paper: 9acto-k4qtl0 , 9acto-k4qz63 , 9acto-k4r5w8 , 9acto-k4r5f5 , 9acto-k4rdx7 , 9acto-k4qu99 , 9acto-k4r0d7 , 9acto-k4rbk8 , strdj-k4r0w1

Title : Pangenomic study of Corynebacterium diphtheriae that provides insights into the genomic diversity of pathogenic isolates from cases of classical diphtheria, endocarditis, and pneumonia - Trost_2012_J.Bacteriol_194_3199
Author(s) : Trost E , Blom J , Soares Sde C , Huang IH , Al-Dilaimi A , Schroder J , Jaenicke S , Dorella FA , Rocha FS , Miyoshi A , Azevedo V , Schneider MP , Silva A , Camello TC , Sabbadini PS , Santos CS , Santos LS , Hirata R, Jr. , Mattos-Guaraldi AL , Efstratiou A , Schmitt MP , Ton-That H , Tauch A
Ref : Journal of Bacteriology , 194 :3199 , 2012
Abstract :
PubMedSearch : Trost_2012_J.Bacteriol_194_3199
PubMedID: 22505676
Gene_locus related to this paper: cordi-q6nes6 , cordi-q6nfz1 , cordk-h2hkn5

Title : Genome sequence of a Neisseria meningitidis capsule null locus strain from the clonal complex of sequence type 198 - Schork_2012_J.Bacteriol_194_5144
Author(s) : Schork S , Schluter A , Blom J , Schneiker-Bekel S , Puhler A , Goesmann A , Frosch M , Schoen C
Ref : Journal of Bacteriology , 194 :5144 , 2012
Abstract :
PubMedSearch : Schork_2012_J.Bacteriol_194_5144
PubMedID: 22933768

Title : Complete genome sequence of the porcine isolate Enterococcus faecalis D32 - Zischka_2012_J.Bacteriol_194_5490
Author(s) : Zischka M , Kuenne C , Blom J , Dabrowski PW , Linke B , Hain T , Nitsche A , Goesmann A , Larsen J , Jensen LB , Witte W , Werner G
Ref : Journal of Bacteriology , 194 :5490 , 2012
Abstract :
PubMedSearch : Zischka_2012_J.Bacteriol_194_5490
PubMedID: 22965105

Title : Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient - Schroder_2012_BMC.Genomics_13_141
Author(s) : Schroder J , Maus I , Meyer K , Wordemann S , Blom J , Jaenicke S , Schneider J , Trost E , Tauch A
Ref : BMC Genomics , 13 :141 , 2012
Abstract :
PubMedSearch : Schroder_2012_BMC.Genomics_13_141
PubMedID: 22524407
Gene_locus related to this paper: corrg-f8dyq4 , corrg-f8dzs5

Title : Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage - Heinl_2012_J.Biotechnol_161_153
Author(s) : Heinl S , Wibberg D , Eikmeyer F , Szczepanowski R , Blom J , Linke B , Goesmann A , Grabherr R , Schwab H , Puhler A , Schluter A
Ref : J Biotechnol , 161 :153 , 2012
Abstract :
PubMedSearch : Heinl_2012_J.Biotechnol_161_153
PubMedID: 22465289
Gene_locus related to this paper: lacbn-f4fwx4

Title : Genome sequence of Fibrella aestuarina BUZ 2(T), a filamentous marine bacterium - Filippini_2012_J.Bacteriol_194_3555
Author(s) : Filippini M , Qi W , Blom J , Goesmann A , Smits TH , Bagheri HC
Ref : Journal of Bacteriology , 194 :3555 , 2012
Abstract :
PubMedSearch : Filippini_2012_J.Bacteriol_194_3555
PubMedID: 22689241
Gene_locus related to this paper: 9bact-i0k5k6 , 9bact-i0k9r5 , 9bact-i0k566 , 9bact-i0kex0 , 9bact-i0kei5 , 9bact-i0k9r6 , 9bact-i0kc75 , 9bact-i0k9s0 , 9bact-i0k9c8

Title : The complete genome of Bacillus amyloliquefaciens subsp. plantarum CAU B946 contains a gene cluster for nonribosomal synthesis of iturin A - Blom_2012_J.Bacteriol_194_1845
Author(s) : Blom J , Rueckert C , Niu B , Wang Q , Borriss R
Ref : Journal of Bacteriology , 194 :1845 , 2012
Abstract :
PubMedSearch : Blom_2012_J.Bacteriol_194_1845
PubMedID: 22408246
Gene_locus related to this paper: baca2-a7z811 , baca2-a7z924

Title : The genome of plant growth-promoting Bacillus amyloliquefaciens subsp. plantarum strain YAU B9601-Y2 contains a gene cluster for mersacidin synthesis - Hao_2012_J.Bacteriol_194_3264
Author(s) : Hao K , He P , Blom J , Rueckert C , Mao Z , Wu Y , He Y , Borriss R
Ref : Journal of Bacteriology , 194 :3264 , 2012
Abstract :
PubMedSearch : Hao_2012_J.Bacteriol_194_3264
PubMedID: 22628498
Gene_locus related to this paper: baca2-a7z811

Title : Genome sequence of the plant growth promoting strain Bacillus amyloliquefaciens subsp. plantarum B9601-Y2 and expression of mersacidin and other secondary metabolites - He_2012_J.Biotechnol_164_281
Author(s) : He P , Hao K , Blom J , Ruckert C , Vater J , Mao Z , Wu Y , Hou M , He Y , Borriss R
Ref : J Biotechnol , 164 :281 , 2012
Abstract :
PubMedSearch : He_2012_J.Biotechnol_164_281
PubMedID: 23357245
Gene_locus related to this paper: baca2-a7z924 , bacsu-YVAK

Title : Complete genome sequence of Saccharothrix espanaensis DSM 44229(T) and comparison to the other completely sequenced Pseudonocardiaceae - Strobel_2012_BMC.Genomics_13_465
Author(s) : Strobel T , Al-Dilaimi A , Blom J , Gessner A , Kalinowski J , Luzhetska M , Puhler A , Szczepanowski R , Bechthold A , Ruckert C
Ref : BMC Genomics , 13 :465 , 2012
Abstract :
PubMedSearch : Strobel_2012_BMC.Genomics_13_465
PubMedID: 22958348
Gene_locus related to this paper: saces-k0jum8 , saces-k0jyd8 , saces-k0jz35 , saces-k0k3q1 , saces-k0k403 , saces-k0jx56 , saces-k0kde1 , saces-k0k4y9 , saces-k0jza0 , saces-k0kf33 , saces-k0jp24 , saces-k0k985

Title : Draft genome sequence of Wickerhamomyces ciferrii NRRL Y-1031 F-60-10 - Schneider_2012_Eukaryot.Cell_11_1582
Author(s) : Schneider J , Andrea H , Blom J , Jaenicke S , Ruckert C , Schorsch C , Szczepanowski R , Farwick M , Goesmann A , Puhler A , Schaffer S , Tauch A , Kohler T , Brinkrolf K
Ref : Eukaryot Cell , 11 :1582 , 2012
Abstract :
PubMedSearch : Schneider_2012_Eukaryot.Cell_11_1582
PubMedID: 23193139
Gene_locus related to this paper: wiccf-k0k780 , wiccf-k0kcu3 , wiccf-k0kir4 , wiccf-k0kmk9 , wiccf-k0kn23 , wiccf-k0krq2 , wiccf-k0ksx2 , wiccf-k0kpv8 , wiccf-k0ksn3 , wiccf-k0kqu5

Title : Complete genome sequence of clinical isolate Pantoea ananatis LMG 5342 - De Maayer_2012_J.Bacteriol_194_1615
Author(s) : De Maayer P , Chan WY , Rezzonico F , Buhlmann A , Venter SN , Blom J , Goesmann A , Frey JE , Smits TH , Duffy B , Coutinho TA
Ref : Journal of Bacteriology , 194 :1615 , 2012
Abstract :
PubMedSearch : De Maayer_2012_J.Bacteriol_194_1615
PubMedID: 22374951
Gene_locus related to this paper: panam-d4gf31 , panam-d4gn21 , panan-g7uev1 , panan-u4w979

Title : Genome sequence of an Erwinia amylovora strain with pathogenicity restricted to Rubus plants - Powney_2011_J.Bacteriol_193_785
Author(s) : Powney R , Smits TH , Sawbridge T , Frey B , Blom J , Frey JE , Plummer KM , Beer SV , Luck J , Duffy B , Rodoni B
Ref : Journal of Bacteriology , 193 :785 , 2011
Abstract :
PubMedSearch : Powney_2011_J.Bacteriol_193_785
PubMedID: 21131493
Gene_locus related to this paper: erwac-d4hxs4 , erwac-d4i2q5 , erwac-d4i301 , erwam-e5b8z0 , erwse-e3dex4

Title : Whole-genome sequence of the transformable Neisseria meningitidis serogroup A strain WUE2594 - Schoen_2011_J.Bacteriol_193_2064
Author(s) : Schoen C , Weber-Lehmann J , Blom J , Joseph B , Goesmann A , Strittmatter A , Frosch M
Ref : Journal of Bacteriology , 193 :2064 , 2011
Abstract :
PubMedSearch : Schoen_2011_J.Bacteriol_193_2064
PubMedID: 21296965
Gene_locus related to this paper: neigo-pip , neima-metx , neime-ESD , neime-NMB0276 , neime-NMB1877 , neime-r0tza2

Title : Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons - Borriss_2011_Int.J.Syst.Evol.Microbiol_61_1786
Author(s) : Borriss R , Chen XH , Rueckert C , Blom J , Becker A , Baumgarth B , Fan B , Pukall R , Schumann P , Sproer C , Junge H , Vater J , Puhler A , Klenk HP
Ref : Int J Syst Evol Microbiol , 61 :1786 , 2011
Abstract :
PubMedSearch : Borriss_2011_Int.J.Syst.Evol.Microbiol_61_1786
PubMedID: 20817842

Title : Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid - Wibberg_2011_J.Biotechnol_155_50
Author(s) : Wibberg D , Blom J , Jaenicke S , Kollin F , Rupp O , Scharf B , Schneiker-Bekel S , Sczcepanowski R , Goesmann A , Setubal JC , Schmitt R , Puhler A , Schluter A
Ref : J Biotechnol , 155 :50 , 2011
Abstract :
PubMedSearch : Wibberg_2011_J.Biotechnol_155_50
PubMedID: 21329740
Gene_locus related to this paper: agrsh-f0l326 , agrsh-f0lb16 , agrsh-f0lfg1 , agrsh-f0lgt6 , agrt5-a9cfs8 , agrt5-q7d1j0 , agrt5-q7d1j3 , agrtu-ATU2126 , agrtu-ATU2481 , agrsh-f0lfk1

Title : The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome - Schneiker-Bekel_2011_J.Biotechnol_155_20
Author(s) : Schneiker-Bekel S , Wibberg D , Bekel T , Blom J , Linke B , Neuweger H , Stiens M , Vorholter FJ , Weidner S , Goesmann A , Puhler A , Schluter A
Ref : J Biotechnol , 155 :20 , 2011
Abstract :
PubMedSearch : Schneiker-Bekel_2011_J.Biotechnol_155_20
PubMedID: 21396969
Gene_locus related to this paper: rhime-PCAD , rhime-RB1395

Title : Complete genome and comparative analysis of Streptococcus gallolyticus subsp. gallolyticus, an emerging pathogen of infective endocarditis - Hinse_2011_BMC.Genomics_12_400
Author(s) : Hinse D , Vollmer T , Ruckert C , Blom J , Kalinowski J , Knabbe C , Dreier J
Ref : BMC Genomics , 12 :400 , 2011
Abstract :
PubMedSearch : Hinse_2011_BMC.Genomics_12_400
PubMedID: 21824414
Gene_locus related to this paper: strg3-d3hc78 , strg3-d3hd15 , strg3-d3hem0 , strg3-d3hem1

Title : Genome sequence of B. amyloliquefaciens type strain DSM7(T) reveals differences to plant-associated B. amyloliquefaciens FZB42 - Ruckert_2011_J.Biotechnol_155_78
Author(s) : Ruckert C , Blom J , Chen X , Reva O , Borriss R
Ref : J Biotechnol , 155 :78 , 2011
Abstract :
PubMedSearch : Ruckert_2011_J.Biotechnol_155_78
PubMedID: 21262282
Gene_locus related to this paper: baca2-a7z7y5 , baca2-a7z811 , bacam-q70jx5 , bacas-e1ukt2 , bacsu-SRFD , bacsu-YVAK , bacas-e1ujw8

Title : Genome of a European fresh-vegetable food safety outbreak strain of Salmonella enterica subsp. enterica serovar weltevreden - Brankatschk_2011_J.Bacteriol_193_2066
Author(s) : Brankatschk K , Blom J , Goesmann A , Smits TH , Duffy B
Ref : Journal of Bacteriology , 193 :2066 , 2011
Abstract :
PubMedSearch : Brankatschk_2011_J.Bacteriol_193_2066
PubMedID: 21296964
Gene_locus related to this paper: salen-OPDB , salti-q8z717 , salty-AES , salty-DLHH , salty-ENTF , salty-FES , salty-IROD , salty-IROE , salty-PLDB , salty-STY1441 , salty-STY3846 , salty-yafa , salty-YBFF , salty-ycfp , salty-YHET

Title : The genome of the plant growth-promoting rhizobacterium Paenibacillus polymyxa M-1 contains nine sites dedicated to nonribosomal synthesis of lipopeptides and polyketides - Niu_2011_J.Bacteriol_193_5862
Author(s) : Niu B , Rueckert C , Blom J , Wang Q , Borriss R
Ref : Journal of Bacteriology , 193 :5862 , 2011
Abstract :
PubMedSearch : Niu_2011_J.Bacteriol_193_5862
PubMedID: 21952539
Gene_locus related to this paper: paep6-e0rmc7

Title : Complete genome sequence of the fire blight pathogen Erwinia amylovora CFBP 1430 and comparison to other Erwinia spp - Smits_2010_Mol.Plant.Microbe.Interact_23_384
Author(s) : Smits TH , Rezzonico F , Kamber T , Blom J , Goesmann A , Frey JE , Duffy B
Ref : Mol Plant Microbe Interact , 23 :384 , 2010
Abstract :
PubMedSearch : Smits_2010_Mol.Plant.Microbe.Interact_23_384
PubMedID: 20192826
Gene_locus related to this paper: erwac-d4hwt0 , erwac-d4hxs4 , erwac-d4i2q5 , erwac-d4i3s4 , erwac-d4i259 , erwac-d4i301 , erwae-d4idw0 , erwse-e3dex4

Title : Comparative genome biology of a serogroup B carriage and disease strain supports a polygenic nature of meningococcal virulence - Joseph_2010_J.Bacteriol_192_5363
Author(s) : Joseph B , Schneiker-Bekel S , Schramm-Gluck A , Blom J , Claus H , Linke B , Schwarz RF , Becker A , Goesmann A , Frosch M , Schoen C
Ref : Journal of Bacteriology , 192 :5363 , 2010
Abstract :
PubMedSearch : Joseph_2010_J.Bacteriol_192_5363
PubMedID: 20709895
Gene_locus related to this paper: neigo-pip , neima-metx , neime-ESD , neime-NMB0276 , neime-NMB1877

Title : Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion - Trost_2010_BMC.Genomics_11_91
Author(s) : Trost E , Gotker S , Schneider J , Schneiker-Bekel S , Szczepanowski R , Tilker A , Viehoever P , Arnold W , Bekel T , Blom J , Gartemann KH , Linke B , Goesmann A , Puhler A , Shukla SK , Tauch A
Ref : BMC Genomics , 11 :91 , 2010
Abstract :
PubMedSearch : Trost_2010_BMC.Genomics_11_91
PubMedID: 20137072
Gene_locus related to this paper: cora7-c3peg4 , cora7-c3pft2 , cora7-c3pgf2 , cora7-c3ph31 , cora7-c3phx8 , cora7-c3piw1 , cora7-c3pix7 , cora7-c3pj13 , cora7-c3pjc9 , cora7-c3pjm1 , cora7-c3pju4 , cora7-c3pjx9 , cora7-c3pjy0 , cora7-c3pk62 , cora7-c3pk63 , cora7-c3pk94 , cora7-c3pk60 , cora7-c3phz6 , cora7-c3phz5 , cora7-c3pim5 , cora7-c3pjw4

Title : Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis - Schoen_2008_Proc.Natl.Acad.Sci.U.S.A_105_3473
Author(s) : Schoen C , Blom J , Claus H , Schramm-Gluck A , Brandt P , Muller T , Goesmann A , Joseph B , Konietzny S , Kurzai O , Schmitt C , Friedrich T , Linke B , Vogel U , Frosch M
Ref : Proc Natl Acad Sci U S A , 105 :3473 , 2008
Abstract :
PubMedSearch : Schoen_2008_Proc.Natl.Acad.Sci.U.S.A_105_3473
PubMedID: 18305155
Gene_locus related to this paper: neigo-pip , neima-metx , neimb-q9k0t9 , neime-ESD , neime-NMA2216 , neime-NMB0276 , neime-NMB1828 , neime-NMB1877

Title : Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids - Tauch_2008_J.Biotechnol_136_22
Author(s) : Tauch A , Schneider J , Szczepanowski R , Tilker A , Viehoever P , Gartemann KH , Arnold W , Blom J , Brinkrolf K , Brune I , Gotker S , Weisshaar B , Goesmann A , Droge M , Puhler A
Ref : J Biotechnol , 136 :22 , 2008
Abstract :
PubMedSearch : Tauch_2008_J.Biotechnol_136_22
PubMedID: 18430482
Gene_locus related to this paper: cork4-c4lgq2 , cork4-c4lgs3 , cork4-c4lgs4 , cork4-c4lgw6 , cork4-c4lh42 , cork4-c4lhh1 , cork4-c4lhj6 , cork4-c4lic3 , cork4-c4ljb8 , cork4-c4llg6 , cork4-c4llg7 , cork4-c4lli9 , cork4-c4llk3 , cork4-c4lgs6 , cork4-c4lhk4