| Title : 5'-untranslated region sequences enhance plasmid-based protein production in Sulfolobus acidocaldarius - Kuschmierz_2024_Front.Microbiol_15_1443342 |
| Author(s) : Kuschmierz L , Wagner A , Schmerling C , Busche T , Kalinowski J , Brasen C , Siebers B |
| Ref : Front Microbiol , 15 :1443342 , 2024 |
| Abstract : |
| PubMedSearch : Kuschmierz_2024_Front.Microbiol_15_1443342 |
| PubMedID: 39654677 |
| Gene_locus related to this paper: sulac-q4j9r2 |
| Title : Extracellular degradation of a polyurethane oligomer involving outer membrane vesicles and further insights on the degradation of 2,4-diaminotoluene in Pseudomonas capeferrum TDA1 - Puiggene_2022_Sci.Rep_12_2666 |
| Author(s) : Puiggene , Espinosa MJC , Schlosser D , Thies S , Jehmlich N , Kappelmeyer U , Schreiber S , Wibberg D , Kalinowski J , Harms H , Heipieper HJ , Eberlein C |
| Ref : Sci Rep , 12 :2666 , 2022 |
| Abstract : |
| PubMedSearch : Puiggene_2022_Sci.Rep_12_2666 |
| PubMedID: 35177693 |
| Title : Screening of a genome-reduced Corynebacterium glutamicum strain library for improved heterologous cutinase secretion - Hemmerich_2020_Microb.Biotechnol_13_2020 |
| Author(s) : Hemmerich J , Labib M , Steffens C , Reich SJ , Weiske M , Baumgart M , Ruckert C , Ruwe M , Siebert D , Wendisch VF , Kalinowski J , Wiechert W , Oldiges M |
| Ref : Microb Biotechnol , 13 :2020 , 2020 |
| Abstract : |
| PubMedSearch : Hemmerich_2020_Microb.Biotechnol_13_2020 |
| PubMedID: 32893457 |
| Title : The MarR-Type Repressor MhqR Confers Quinone and Antimicrobial Resistance in Staphylococcus aureus - Fritsch_2019_Antioxid.Redox.Signal_31_1235 |
| Author(s) : Fritsch VN , Loi VV , Busche T , Sommer A , Tedin K , Nurnberg DJ , Kalinowski J , Bernhardt J , Fulde M , Antelmann H |
| Ref : Antioxid Redox Signal , 31 :1235 , 2019 |
| Abstract : |
| PubMedSearch : Fritsch_2019_Antioxid.Redox.Signal_31_1235 |
| PubMedID: 31310152 |
| Title : Streptomyces spp. From Ethiopia Producing Antimicrobial Compounds: Characterization via Bioassays, Genome Analyses, and Mass Spectrometry - Kibret_2018_Front.Microbiol_9_1270 |
| Author(s) : Kibret M , Guerrero-Garzon JF , Urban E , Zehl M , Wronski VK , Ruckert C , Busche T , Kalinowski J , Rollinger JM , Abate D , Zotchev SB |
| Ref : Front Microbiol , 9 :1270 , 2018 |
| Abstract : |
| PubMedSearch : Kibret_2018_Front.Microbiol_9_1270 |
| PubMedID: 29946312 |
| Gene_locus related to this paper: 9actn-a0a2z5k109 , strln-a0a1b1mpt5 |
| Title : Mycobacterium abscessus subsp. abscessus Is Capable of Degrading Pseudomonas aeruginosa Quinolone Signals - Birmes_2017_Front.Microbiol_8_339 |
| Author(s) : Birmes FS , Wolf T , Kohl TA , Ruger K , Bange F , Kalinowski J , Fetzner S |
| Ref : Front Microbiol , 8 :339 , 2017 |
| Abstract : |
| PubMedSearch : Birmes_2017_Front.Microbiol_8_339 |
| PubMedID: 28303132 |
| Gene_locus related to this paper: rhoer-aqdC1 , rhoer-aqdC2 |
| Title : Complete genome sequence of the actinobacterium Streptomyces glaucescens GLA.O (DSM 40922) consisting of a linear chromosome and one linear plasmid - Ortseifen_2015_J.Biotechnol_194_81 |
| Author(s) : Ortseifen V , Winkler A , Albersmeier A , Wendler S , Puhler A , Kalinowski J , Ruckert C |
| Ref : J Biotechnol , 194 :81 , 2015 |
| Abstract : |
| PubMedSearch : Ortseifen_2015_J.Biotechnol_194_81 |
| PubMedID: 25499805 |
| Gene_locus related to this paper: strga-a0a089wz13 , strga-a0a089xbk0 , strga-a0a089xdk2 |
| Title : Sphingopyxis fribergensis sp. nov., a soil bacterium with the ability to degrade styrene and phenylacetic acid - Oelschlagel_2015_Int.J.Syst.Evol.Microbiol_65_3008 |
| Author(s) : Oelschlagel M , Ruckert C , Kalinowski J , Schmidt G , Schlomann M , Tischler D |
| Ref : Int J Syst Evol Microbiol , 65 :3008 , 2015 |
| Abstract : |
| PubMedSearch : Oelschlagel_2015_Int.J.Syst.Evol.Microbiol_65_3008 |
| PubMedID: 26040579 |
| Gene_locus related to this paper: 9sphn-a0a0a7pef0 , 9sphn-a0a0a7phu9 , 9sphn-a0a0a7pis5 , 9sphn-a0a0a7pku1 |
| Title : Transcriptome analysis of thermophilic methylotrophic Bacillus methanolicus MGA3 using RNA-sequencing provides detailed insights into its previously uncharted transcriptional landscape - Irla_2015_BMC.Genomics_16_73 |
| Author(s) : Irla M , Neshat A , Brautaset T , Ruckert C , Kalinowski J , Wendisch VF |
| Ref : BMC Genomics , 16 :73 , 2015 |
| Abstract : |
| PubMedSearch : Irla_2015_BMC.Genomics_16_73 |
| PubMedID: 25758049 |
| Gene_locus related to this paper: bacmt-i3e290 , bacmt-i3e3t1 |
| Title : Rhodococcus erythropolis BG43 Genes Mediating Pseudomonas aeruginosa Quinolone Signal Degradation and Virulence Factor Attenuation - Muller_2015_Appl.Environ.Microbiol_81_7720 |
| Author(s) : Muller C , Birmes FS , Ruckert C , Kalinowski J , Fetzner S |
| Ref : Applied Environmental Microbiology , 81 :7720 , 2015 |
| Abstract : |
| PubMedSearch : Muller_2015_Appl.Environ.Microbiol_81_7720 |
| PubMedID: 26319870 |
| Gene_locus related to this paper: rhoer-aqdC1 , rhoer-aqdC2 , rhoer-aqda1 |
| Title : Complete genome sequence of Rhodococcus erythropolis BG43 (DSM 46869), a degrader of Pseudomonas aeruginosa quorum sensing signal molecules - Ruckert_2015_J.Biotechnol_211_99 |
| Author(s) : Ruckert C , Birmes FS , Muller C , Niewerth H , Winkler A , Fetzner S , Kalinowski J |
| Ref : J Biotechnol , 211 :99 , 2015 |
| Abstract : |
| PubMedSearch : Ruckert_2015_J.Biotechnol_211_99 |
| PubMedID: 26210289 |
| Gene_locus related to this paper: rhoer-aqdC2 , rhoer-aqda1 |
| Title : Complete genome sequence of producer of the glycopeptide antibiotic Aculeximycin Kutzneria albida DSM 43870T, a representative of minor genus of Pseudonocardiaceae - Rebets_2014_BMC.Genomics_15_885 |
| Author(s) : Rebets Y , Tokovenko B , Lushchyk I , Ruckert C , Zaburannyi N , Bechthold A , Kalinowski J , Luzhetskyy A |
| Ref : BMC Genomics , 15 :885 , 2014 |
| Abstract : |
| PubMedSearch : Rebets_2014_BMC.Genomics_15_885 |
| PubMedID: 25301375 |
| Gene_locus related to this paper: 9pseu-w5wb46 , 9pseu-w5w9h1 , 9pseu-w5w9d4 , 9pseu-w5w6n8 , 9pseu-w5w924 , 9pseu-w5wn13 , 9pseu-w5w4f4 , 9pseu-w5wnh6 , 9pseu-w5wfm1 , 9pseu-w5vzh2 , 9pseu-w5wbh7 , 9pseu-w5wdd1 , 9pseu-w5wtp1 , 9pseu-w5w662 , 9pseu-w5w1s2 |
| Title : Complete genome sequence of the actinobacterium Amycolatopsis japonica MG417-CF17(T) (=DSM 44213T) producing (S,S)-N,N'-ethylenediaminedisuccinic acid - Stegmann_2014_J.Biotechnol_189_46 |
| Author(s) : Stegmann E , Albersmeier A , Spohn M , Gert H , Weber T , Wohlleben W , Kalinowski J , Ruckert C |
| Ref : J Biotechnol , 189 :46 , 2014 |
| Abstract : |
| PubMedSearch : Stegmann_2014_J.Biotechnol_189_46 |
| PubMedID: 25193710 |
| Gene_locus related to this paper: 9pseu-a0a075uue7 , 9pseu-a0a075v869 , 9pseu-a0a075uww4 , 9pseu-a0a075uk16 , amyor-r4t8c7 , 9pseu-a0a075uss8 , amyor-r4t1x8 , 9pseu-a0a075ult0 , 9pseu-a0a075upj7 , 9pseu-a0a075uy09 , 9pseu-a0a075v6c3 , 9pseu-a0a075ut42 |
| Title : Draft Genome Sequence of Streptomyces roseochromogenes subsp. oscitans DS 12.976, Producer of the Aminocoumarin Antibiotic Clorobiocin - Ruckert_2014_Genome.Announc_2_e01147 |
| Author(s) : Ruckert C , Kalinowski J , Heide L , Apel AK |
| Ref : Genome Announc , 2 : , 2014 |
| Abstract : |
| PubMedSearch : Ruckert_2014_Genome.Announc_2_e01147 |
| PubMedID: 24407645 |
| Gene_locus related to this paper: strrc-v6krh8 , strrc-v6kg00 , strrc-v6jy60 , strrc-v6l218 , strrc-v6jui4 , strrc-v6jgz4 , strrc-v6jsq5 , strrc-v6k8h5 , strrc-v6jgj1 , strrc-v6ks41 |
| Title : Draft Genome Sequence of Streptomyces niveus NCIMB 11891, Producer of the Aminocoumarin Antibiotic Novobiocin - Flinspach_2014_Genome.Announc_2_e01146 |
| Author(s) : Flinspach K , Ruckert C , Kalinowski J , Heide L , Apel AK |
| Ref : Genome Announc , 2 : , 2014 |
| Abstract : |
| PubMedSearch : Flinspach_2014_Genome.Announc_2_e01146 |
| PubMedID: 24407644 |
| Gene_locus related to this paper: strnv-v6jzm7 , strnv-v6klv9 , strnv-v6jmz0 , strnv-v6jpb8 , strnv-v6knj3 , strnv-v6kl41 , strnv-v6jhg3 , strnv-v6jtn6 |
| Title : Complete genome sequence of the actinobacterium Actinoplanes friuliensis HAG 010964, producer of the lipopeptide antibiotic friulimycin - Ruckert_2014_J.Biotechnol_178_41 |
| Author(s) : Ruckert C , Szczepanowski R , Albersmeier A , Goesmann A , Fischer N , Steinkamper A , Puhler A , Biener R , Schwartz D , Kalinowski J |
| Ref : J Biotechnol , 178 :41 , 2014 |
| Abstract : |
| PubMedSearch : Ruckert_2014_J.Biotechnol_178_41 |
| PubMedID: 24637369 |
| Gene_locus related to this paper: 9actn-u5w1i4 , 9actn-u5w1j2 , 9actn-u5w2q0 , 9actn-u5wd34 , 9actn-u5w1u3 , 9actn-u5w019 , 9actn-u5w4l0 |
| Title : An environmental bacterial taxon with a large and distinct metabolic repertoire - Wilson_2014_Nature_506_58 |
| Author(s) : Wilson MC , Mori T , Ruckert C , Uria AR , Helf MJ , Takada K , Gernert C , Steffens UA , Heycke N , Schmitt S , Rinke C , Helfrich EJ , Brachmann AO , Gurgui C , Wakimoto T , Kracht M , Crusemann M , Hentschel U , Abe I , Matsunaga S , Kalinowski J , Takeyama H , Piel J |
| Ref : Nature , 506 :58 , 2014 |
| Abstract : |
| PubMedSearch : Wilson_2014_Nature_506_58 |
| PubMedID: 24476823 |
| Gene_locus related to this paper: 9delt-w4lci7 , 9delt-w4lkq9 , 9delt-w4lj58 , 9delt-w4l7a4 , 9delt-w4m617 |
| Title : Complete genome sequence of the kirromycin producer Streptomyces collinus Tu 365 consisting of a linear chromosome and two linear plasmids - Ruckert_2013_J.Biotechnol_168_739 |
| Author(s) : Ruckert C , Szczepanowski R , Albersmeier A , Goesmann A , Iftime D , Musiol EM , Blin K , Wohlleben W , Puhler A , Kalinowski J , Weber T |
| Ref : J Biotechnol , 168 :739 , 2013 |
| Abstract : |
| PubMedSearch : Ruckert_2013_J.Biotechnol_168_739 |
| PubMedID: 24140291 |
| Gene_locus related to this paper: strc3-s5v3l4 , strc3-s5vff6 , strc3-s5va60 |
| Title : Construction of a prophage-free variant of Corynebacterium glutamicum ATCC 13032 for use as a platform strain for basic research and industrial biotechnology - Baumgart_2013_Appl.Environ.Microbiol_79_6006 |
| Author(s) : Baumgart M , Unthan S , Ruckert C , Sivalingam J , Grunberger A , Kalinowski J , Bott M , Noack S , Frunzke J |
| Ref : Applied Environmental Microbiology , 79 :6006 , 2013 |
| Abstract : |
| PubMedSearch : Baumgart_2013_Appl.Environ.Microbiol_79_6006 |
| PubMedID: 23892752 |
| Gene_locus related to this paper: corgl-Cgl1133 , corgl-Cgl2249 , corgl-CGL2393 |
| Title : Whole genome sequencing versus traditional genotyping for investigation of a Mycobacterium tuberculosis outbreak: a longitudinal molecular epidemiological study - Roetzer_2013_PLoS.Med_10_e1001387 |
| Author(s) : Roetzer A , Diel R , Kohl TA , Ruckert C , Nubel U , Blom J , Wirth T , Jaenicke S , Schuback S , Rusch-Gerdes S , Supply P , Kalinowski J , Niemann S |
| Ref : PLoS Med , 10 :e1001387 , 2013 |
| Abstract : |
| PubMedSearch : Roetzer_2013_PLoS.Med_10_e1001387 |
| PubMedID: 23424287 |
| Gene_locus related to this paper: myctu-cutas1 , myctu-RV1215C , myctu-Rv2045c |
| Title : Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production - Bogen_2013_BMC.Genomics_14_926 |
| Author(s) : Bogen C , Al-Dilaimi A , Albersmeier A , Wichmann J , Grundmann M , Rupp O , Lauersen KJ , Blifernez-Klassen O , Kalinowski J , Goesmann A , Mussgnug JH , Kruse O |
| Ref : BMC Genomics , 14 :926 , 2013 |
| Abstract : |
| PubMedSearch : Bogen_2013_BMC.Genomics_14_926 |
| PubMedID: 24373495 |
| Gene_locus related to this paper: 9chlo-a0a0d2mui5 |
| Title : Genome sequence of the halotolerant bacterium Corynebacterium halotolerans type strain YIM 70093(T) (= DSM 44683(T)) - Ruckert_2012_Stand.Genomic.Sci_7_284 |
| Author(s) : Ruckert C , Albersmeier A , Al-Dilaimi A , Niehaus K , Szczepanowski R , Kalinowski J |
| Ref : Stand Genomic Sci , 7 :284 , 2012 |
| Abstract : |
| PubMedSearch : Ruckert_2012_Stand.Genomic.Sci_7_284 |
| PubMedID: 23408721 |
| Gene_locus related to this paper: 9cory-m1p007 , 9cory-m1mwn5 , 9cory-m1p952 |
| Title : Complete genome sequence of Saccharothrix espanaensis DSM 44229(T) and comparison to the other completely sequenced Pseudonocardiaceae - Strobel_2012_BMC.Genomics_13_465 |
| Author(s) : Strobel T , Al-Dilaimi A , Blom J , Gessner A , Kalinowski J , Luzhetska M , Puhler A , Szczepanowski R , Bechthold A , Ruckert C |
| Ref : BMC Genomics , 13 :465 , 2012 |
| Abstract : |
| PubMedSearch : Strobel_2012_BMC.Genomics_13_465 |
| PubMedID: 22958348 |
| Gene_locus related to this paper: saces-k0jum8 , saces-k0jyd8 , saces-k0jz35 , saces-k0k3q1 , saces-k0k403 , saces-k0jx56 , saces-k0kde1 , saces-k0k4y9 , saces-k0jza0 , saces-k0kf33 , saces-k0jp24 , saces-k0k985 |
| Title : Draft genome sequence of Bacillus anthracis BF-1, isolated from Bavarian cattle - Antwerpen_2012_J.Bacteriol_194_6360 |
| Author(s) : Antwerpen M , Proenca DN , Ruckert C , Licht K , Kalinowski J , Hanczaruk M , Tiemann C , Grass G |
| Ref : Journal of Bacteriology , 194 :6360 , 2012 |
| Abstract : |
| PubMedSearch : Antwerpen_2012_J.Bacteriol_194_6360 |
| PubMedID: 23105087 |
| Gene_locus related to this paper: bacan-BA2392 , bacan-BA4324 , bacce-BC2171 |
| Title : Draft genome sequence of Bacillus anthracis UR-1, isolated from a German heroin user - Ruckert_2012_J.Bacteriol_194_5997 |
| Author(s) : Ruckert C , Licht K , Kalinowski J , Espirito Santo C , Antwerpen M , Hanczaruk M , Reischl U , Holzmann T , Gessner A , Tiemann C , Grass G |
| Ref : Journal of Bacteriology , 194 :5997 , 2012 |
| Abstract : |
| PubMedSearch : Ruckert_2012_J.Bacteriol_194_5997 |
| PubMedID: 23045504 |
| Gene_locus related to this paper: bacan-BA2392 , bacan-BA4324 , bacce-BC2171 |
| Title : Genome sequence of the bacterium Streptomyces davawensis JCM 4913 and heterologous production of the unique antibiotic roseoflavin - Jankowitsch_2012_J.Bacteriol_194_6818 |
| Author(s) : Jankowitsch F , Schwarz J , Ruckert C , Gust B , Szczepanowski R , Blom J , Pelzer S , Kalinowski J , Mack M |
| Ref : Journal of Bacteriology , 194 :6818 , 2012 |
| Abstract : |
| PubMedSearch : Jankowitsch_2012_J.Bacteriol_194_6818 |
| PubMedID: 23043000 |
| Gene_locus related to this paper: 9acto-k4qtl0 , 9acto-k4qz63 , 9acto-k4r5w8 , 9acto-k4r5f5 , 9acto-k4rdx7 , 9acto-k4qu99 , 9acto-k4r0d7 , 9acto-k4rbk8 , strdj-k4r0w1 |
| Title : Complete genome and comparative analysis of Streptococcus gallolyticus subsp. gallolyticus, an emerging pathogen of infective endocarditis - Hinse_2011_BMC.Genomics_12_400 |
| Author(s) : Hinse D , Vollmer T , Ruckert C , Blom J , Kalinowski J , Knabbe C , Dreier J |
| Ref : BMC Genomics , 12 :400 , 2011 |
| Abstract : |
| PubMedSearch : Hinse_2011_BMC.Genomics_12_400 |
| PubMedID: 21824414 |
| Gene_locus related to this paper: strg3-d3hc78 , strg3-d3hd15 , strg3-d3hem0 , strg3-d3hem1 |
| Title : The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing - Tauch_2008_J.Biotechnol_136_11 |
| Author(s) : Tauch A , Trost E , Tilker A , Ludewig U , Schneiker S , Goesmann A , Arnold W , Bekel T , Brinkrolf K , Brune I , Gotker S , Kalinowski J , Kamp PB , Lobo FP , Viehoever P , Weisshaar B , Soriano F , Droge M , Puhler A |
| Ref : J Biotechnol , 136 :11 , 2008 |
| Abstract : |
| PubMedSearch : Tauch_2008_J.Biotechnol_136_11 |
| PubMedID: 18367281 |
| Gene_locus related to this paper: corjk-q4jta2 , coru7-b1vdx7 , coru7-b1vec6 , coru7-b1vec7 , coru7-b1vgb2 , coru7-b1vhj3 , coru7-b1vhm7 , coru7-b1vhw7 , coru7-b1vi01 , coru7-b1vi11 , coru7-b1vi21 , coru7-b1vig1 , coru7-b1vik9 , coru7-metx , coru7-b1vec9 , coru7-b1vix1 |
| Title : The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity - Gartemann_2008_J.Bacteriol_190_2138 |
| Author(s) : Gartemann KH , Abt B , Bekel T , Burger A , Engemann J , Flugel M , Gaigalat L , Goesmann A , Grafen I , Kalinowski J , Kaup O , Kirchner O , Krause L , Linke B , McHardy A , Meyer F , Pohle S , Ruckert C , Schneiker S , Zellermann EM , Puhler A , Eichenlaub R , Kaiser O , Bartels D |
| Ref : Journal of Bacteriology , 190 :2138 , 2008 |
| Abstract : |
| PubMedSearch : Gartemann_2008_J.Bacteriol_190_2138 |
| PubMedID: 18192381 |
| Gene_locus related to this paper: clam3-a5cln9 , clam3-a5clw2 , clam3-a5cm48 , clam3-a5cmg3 , clam3-a5cmk0 , clam3-a5cn86 , clam3-a5cr52 , clam3-a5cr57 , clam3-a5crq6 , clam3-a5csc5 , clam3-metx , clams-b0rcr0 , clams-b0rdd6 , clams-b0rde2 , clams-b0rga8 , clams-b0riv5 , clam3-a5cui5 , clam3-a5cp43 , clam3-a5cp56 |
| Title : Identification and functional analysis of six mycolyltransferase genes of Corynebacterium glutamicum ATCC 13032: the genes cop1, cmt1, and cmt2 can replace each other in the synthesis of trehalose dicorynomycolate, a component of the mycolic acid layer of the cell envelope - Brand_2003_Arch.Microbiol_180_33 |
| Author(s) : Brand S , Niehaus K , Puhler A , Kalinowski J |
| Ref : Arch Microbiol , 180 :33 , 2003 |
| Abstract : |
| PubMedSearch : Brand_2003_Arch.Microbiol_180_33 |
| PubMedID: 12740729 |
| Gene_locus related to this paper: corgl-CGL0343 , corgl-CGL1031 , corgl-CGL2181 , corgl-CGL2878 , corgl-csp1 |
| Title : The alanine racemase gene alr is an alternative to antibiotic resistance genes in cloning systems for industrial Corynebacterium glutamicum strains - Tauch_2002_J.Biotechnol_99_79 |
| Author(s) : Tauch A , Gotker S , Puhler A , Kalinowski J , Thierbach G |
| Ref : J Biotechnol , 99 :79 , 2002 |
| Abstract : |
| PubMedSearch : Tauch_2002_J.Biotechnol_99_79 |
| PubMedID: 12204559 |
| Gene_locus related to this paper: corgl-CGL0587 |
| Title : Molecular analysis of the Corynebacterium glutamicum lysl gene involved in lysine uptake - Seep-Feldhaus_1991_Mol.Microbiol_5_2995 |
| Author(s) : Seep-Feldhaus AH , Kalinowski J , Puhler A |
| Ref : Molecular Microbiology , 5 :2995 , 1991 |
| Abstract : |
| PubMedSearch : Seep-Feldhaus_1991_Mol.Microbiol_5_2995 |
| PubMedID: 1667221 |
| Gene_locus related to this paper: corgl-y967 |