| Title : Characterization of Enzymes Involved in Nintedanib Metabolism in Humans - Nakashima_2023_Drug.Metab.Dispos_51_733 |
| Author(s) : Nakashima S , Sato R , Fukami T , Kudo T , Hashiba S , Morinaga G , Nakano M , Ludwig-Schwellinger E , Matsui A , Ishiguro N , Ebner T , Nakajima M |
| Ref : Drug Metabolism & Disposition: The Biological Fate of Chemicals , 51 :733 , 2023 |
| Abstract : |
| PubMedSearch : Nakashima_2023_Drug.Metab.Dispos_51_733 |
| PubMedID: 36927840 |
| Title : Draft Genome Sequences of Psychrobacter Strains JCM 18900, JCM 18901, JCM 18902, and JCM 18903, Isolated Preferentially from Frozen Aquatic Organisms - Kudo_2014_Genome.Announc_2_e00280 |
| Author(s) : Kudo T , Kidera A , Kida M , Kawauchi A , Shimizu R , Nakahara T , Zhang X , Yamada A , Amano M , Hamada Y , Taniyama S , Arakawa O , Yoshida A , Oshima K , Suda W , Kuwahara H , Nogi Y , Kitamura K , Yuki M , Iida T , Moriya S , Inoue T , Hongoh Y , Hattori M , Ohkuma M |
| Ref : Genome Announc , 2 :e00280 , 2014 |
| Abstract : |
| PubMedSearch : Kudo_2014_Genome.Announc_2_e00280 |
| PubMedID: 24699965 |
| Gene_locus related to this paper: 9gamm-x0q9t6 , 9gamm-x0r0h9 , 9gamm-x0rb73 , 9gamm-x0qpg3 , 9gamm-x0rx94 , 9gamm-x0rpe0 |
| Title : Draft Genome Sequences of Cyclodextrin-Producing Alkaliphilic Bacillus Strains JCM 19045, JCM 19046, and JCM 19047 - Kudo_2014_Genome.Announc_2_e00211 |
| Author(s) : Kudo T , Sakamoto K , Akinaga M , Kawauchi A , Nakahara T , Zhang X , Yamada A , Oshima K , Suda W , Kuwahara H , Nakamura N , Nogi Y , Kitamura K , Yuki M , Iida T , Moriya S , Inoue T , Hongoh Y , Hattori M , Ohkuma M |
| Ref : Genome Announc , 2 : , 2014 |
| Abstract : |
| PubMedSearch : Kudo_2014_Genome.Announc_2_e00211 |
| PubMedID: 24652985 |
| Gene_locus related to this paper: 9baci-a0a060lzd7 , 9baci-w7yjr4 , 9baci-w7zpe5 , 9baci-w8a608 , 9baci-w7zad0 |
| Title : Draft Genome Sequences of Geomicrobium sp. Strains JCM 19037, JCM 19038, JCM 19039, and JCM 19055, Isolated from Aquatic Samples - Kudo_2014_Genome.Announc_2_e00622 |
| Author(s) : Kudo T , Nakahara T , Zhang X , Taniyama S , Arakawa O , Murase S , Nakata H , Oshima K , Suda W , Kitamura K , Iida T , Oshida Y , Inoue T , Hongoh Y , Hattori M , Ohkuma M |
| Ref : Genome Announc , 2 : , 2014 |
| Abstract : |
| PubMedSearch : Kudo_2014_Genome.Announc_2_e00622 |
| PubMedID: 24948772 |
| Gene_locus related to this paper: 9bacl-a0a061nv39 , 9bacl-a0a061nsm4 , 9bacl-a0a061ndf6 , 9bacl-a0a061nlu5 , 9bacl-a0a061ntb4 , 9bacl-a0a061nnc9 , 9bacl-a0a061pf66 |
| Title : Draft Genome Sequences of Vibrio sp. Strains Isolated from Tetrodotoxin-Bearing Scavenging Gastropod - Kudo_2014_Genome.Announc_2_e00623 |
| Author(s) : Kudo T , Kawauchi A , Nakahara T , Zhang X , Taniyama S , Takatani T , Arakawa O , Oshima K , Suda W , Kitamura K , Iida T , Iino T , Inoue T , Hongoh Y , Hattori M , Ohkuma M |
| Ref : Genome Announc , 2 : , 2014 |
| Abstract : |
| PubMedSearch : Kudo_2014_Genome.Announc_2_e00623 |
| PubMedID: 24948773 |
| Title : The GAF-like-domain-containing transcriptional regulator DfdR is a sensor protein for dibenzofuran and several hydrophobic aromatic compounds - Iida_2009_J.Bacteriol_191_123 |
| Author(s) : Iida T , Waki T , Nakamura K , Mukouzaka Y , Kudo T |
| Ref : Journal of Bacteriology , 191 :123 , 2009 |
| Abstract : |
| PubMedSearch : Iida_2009_J.Bacteriol_191_123 |
| PubMedID: 18952799 |
| Gene_locus related to this paper: rhosp-DFDC |
| Title : Analysis of two gene clusters involved in the degradation of 4-fluorophenol by Arthrobacter sp. strain IF1 - Ferreira_2009_Appl.Environ.Microbiol_75_7767 |
| Author(s) : Ferreira MI , Iida T , Hasan SA , Nakamura K , Fraaije MW , Janssen DB , Kudo T |
| Ref : Applied Environmental Microbiology , 75 :7767 , 2009 |
| Abstract : |
| PubMedSearch : Ferreira_2009_Appl.Environ.Microbiol_75_7767 |
| PubMedID: 19837837 |
| Gene_locus related to this paper: 9micc-d1mys5 |
| Title : Polychlorinated biphenyl\/biphenyl degrading gene clusters in Rhodococcus sp. K37, HA99, and TA431 are different from well-known bph gene clusters of Rhodococci - Taguchi_2007_Biosci.Biotechnol.Biochem_71_1136 |
| Author(s) : Taguchi K , Motoyama M , Iida T , Kudo T |
| Ref : Biosci Biotechnol Biochem , 71 :1136 , 2007 |
| Abstract : |
| PubMedSearch : Taguchi_2007_Biosci.Biotechnol.Biochem_71_1136 |
| PubMedID: 17485846 |
| Gene_locus related to this paper: rhoer-a3kd02 |
| Title : Reduced contamination by the Fusarium mycotoxin zearalenone in maize kernels through genetic modification with a detoxification gene - Igawa_2007_Appl.Environ.Microbiol_73_1622 |
| Author(s) : Igawa T , Takahashi-Ando N , Ochiai N , Ohsato S , Shimizu T , Kudo T , Yamaguchi I , Kimura M |
| Ref : Applied Environmental Microbiology , 73 :1622 , 2007 |
| Abstract : |
| PubMedSearch : Igawa_2007_Appl.Environ.Microbiol_73_1622 |
| PubMedID: 17209063 |
| Gene_locus related to this paper: biooc-ZHD101 |
| Title : Identification of a response regulator gene for catabolite control from a PCB-degrading beta-proteobacteria, Acidovorax sp. KKS102 - Ohtsubo_2006_Mol.Microbiol_60_1563 |
| Author(s) : Ohtsubo Y , Goto H , Nagata Y , Kudo T , Tsuda M |
| Ref : Molecular Microbiology , 60 :1563 , 2006 |
| Abstract : |
| PubMedSearch : Ohtsubo_2006_Mol.Microbiol_60_1563 |
| PubMedID: 16796688 |
| Title : Isolation and characterization of a gene cluster for dibenzofuran degradation in a new dibenzofuran-utilizing bacterium, Paenibacillus sp. strain YK5 - Iida_2006_Arch.Microbiol_184_305 |
| Author(s) : Iida T , Nakamura K , Izumi A , Mukouzaka Y , Kudo T |
| Ref : Arch Microbiol , 184 :305 , 2006 |
| Abstract : |
| PubMedSearch : Iida_2006_Arch.Microbiol_184_305 |
| PubMedID: 16284749 |
| Gene_locus related to this paper: 9bacl-q2wga4 |
| Title : Identification of 9,17-dioxo-1,2,3,4,10,19-hexanorandrostan-5-oic acid, 4-hydroxy-2-oxohexanoic acid, and 2-hydroxyhexa-2,4-dienoic acid and related enzymes involved in testosterone degradation in Comamonas testosteroni TA441 - Horinouchi_2005_Appl.Environ.Microbiol_71_5275 |
| Author(s) : Horinouchi M , Hayashi T , Koshino H , Kurita T , Kudo T |
| Ref : Applied Environmental Microbiology , 71 :5275 , 2005 |
| Abstract : |
| PubMedSearch : Horinouchi_2005_Appl.Environ.Microbiol_71_5275 |
| PubMedID: 16151114 |
| Gene_locus related to this paper: comte-TESD |
| Title : A model transgenic cereal plant with detoxification activity for the estrogenic mycotoxin zearalenone - Higa-Nishiyama_2005_Transgenic.Res_14_713 |
| Author(s) : Higa-Nishiyama A , Takahashi-Ando N , Shimizu T , Kudo T , Yamaguchi I , Kimura M |
| Ref : Transgenic Res , 14 :713 , 2005 |
| Abstract : |
| PubMedSearch : Higa-Nishiyama_2005_Transgenic.Res_14_713 |
| PubMedID: 16245162 |
| Gene_locus related to this paper: biooc-ZHD101 |
| Title : Multiplicity of 2,3-dihydroxybiphenyl dioxygenase genes in the Gram-positive polychlorinated biphenyl degrading bacterium Rhodococcus rhodochrous K37 - Taguchi_2004_Biosci.Biotechnol.Biochem_68_787 |
| Author(s) : Taguchi K , Motoyama M , Kudo T |
| Ref : Biosci Biotechnol Biochem , 68 :787 , 2004 |
| Abstract : |
| PubMedSearch : Taguchi_2004_Biosci.Biotechnol.Biochem_68_787 |
| PubMedID: 15118304 |
| Gene_locus related to this paper: rhoer-a3kd02 , rhorh-a3kcv3 , rhorh-a3kcw7 , rhorh-q762g8 , rhorh-q762h6 , rhosp-ORF4 |
| Title : Steroid degradation gene cluster of Comamonas testosteroni consisting of 18 putative genes from meta-cleavage enzyme gene tesB to regulator gene tesR - Horinouchi_2004_Biochem.Biophys.Res.Commun_324_597 |
| Author(s) : Horinouchi M , Kurita T , Yamamoto T , Hatori E , Hayashi T , Kudo T |
| Ref : Biochemical & Biophysical Research Communications , 324 :597 , 2004 |
| Abstract : |
| PubMedSearch : Horinouchi_2004_Biochem.Biophys.Res.Commun_324_597 |
| PubMedID: 15474469 |
| Title : Gene encoding the hydrolase for the product of the meta-cleavage reaction in testosterone degradation by Comamonas testosteroni - Horinouchi_2003_Appl.Environ.Microbiol_69_2139 |
| Author(s) : Horinouchi M , Hayashi T , Koshino H , Yamamoto T , Kudo T |
| Ref : Applied Environmental Microbiology , 69 :2139 , 2003 |
| Abstract : |
| PubMedSearch : Horinouchi_2003_Appl.Environ.Microbiol_69_2139 |
| PubMedID: 12676694 |
| Gene_locus related to this paper: comte-TESD |
| Title : Isolation and characterization of dibenzofuran-degrading actinomycetes: analysis of multiple extradiol dioxygenase genes in dibenzofuran-degrading Rhodococcus species - Iida_2002_Biosci.Biotechnol.Biochem_66_1462 |
| Author(s) : Iida T , Mukouzaka Y , Nakamura K , Yamaguchi I , Kudo T |
| Ref : Biosci Biotechnol Biochem , 66 :1462 , 2002 |
| Abstract : |
| PubMedSearch : Iida_2002_Biosci.Biotechnol.Biochem_66_1462 |
| PubMedID: 12224629 |
| Gene_locus related to this paper: rhosp-DFDC , rhosp-ORF1 |
| Title : Plasmid-borne genes code for an angular dioxygenase involved in dibenzofuran degradation by Terrabacter sp. strain YK3 - Iida_2002_Appl.Environ.Microbiol_68_3716 |
| Author(s) : Iida T , Mukouzaka Y , Nakamura K , Kudo T |
| Ref : Applied Environmental Microbiology , 68 :3716 , 2002 |
| Abstract : |
| PubMedSearch : Iida_2002_Appl.Environ.Microbiol_68_3716 |
| PubMedID: 12147464 |
| Gene_locus related to this paper: rhosp-DFDC |
| Title : Pseudomonas putida CE2010 can degrade biphenyl by a mosaic pathway encoded by the tod operon and cmtE, which are identical to those of P. putida F1 except for a single base difference in the operator-promoter region of the cmt operon - Ohta_2001_Microbiology_147_31 |
| Author(s) : Ohta Y , Maeda M , Kudo T |
| Ref : Microbiology , 147 :31 , 2001 |
| Abstract : |
| PubMedSearch : Ohta_2001_Microbiology_147_31 |
| PubMedID: 11160798 |
| Gene_locus related to this paper: psepu-todf |
| Title : [Treatment of the elderly dementia patients] - |
| Author(s) : Takeda M , Shinosaki K , Nishikawa T , Tanaka T , Kudo T , Nakamura Y , Kashiwagi Y |
| Ref : Nippon Ronen Igakkai Zasshi , 37 :879 , 2000 |
| PubMedID: 11193359 |
| Title : Genetic organization and characteristics of the 3-(3-hydroxyphenyl)propionic acid degradation pathway of Comamonas testosteroni TA441 - Arai_1999_Microbiology_145_2813 |
| Author(s) : Arai H , Yamamoto T , Ohishi T , Shimizu T , Nakata T , Kudo T |
| Ref : Microbiology , 145 ( Pt 10) :2813 , 1999 |
| Abstract : |
| PubMedSearch : Arai_1999_Microbiology_145_2813 |
| PubMedID: 10537203 |
| Gene_locus related to this paper: comte-mhpC |
| Title : Lymphatic network and nerve plexus in the myenteric layer of the monkey jejunum: a topographic study using an enzyme-histochemical method - Shimoda_1998_Arch.Histol.Cytol_61_65 |
| Author(s) : Shimoda H , Kato S , Kudo T , Usui T |
| Ref : Archives of Histology & Cytology , 61 :65 , 1998 |
| Abstract : |
| PubMedSearch : Shimoda_1998_Arch.Histol.Cytol_61_65 |
| PubMedID: 9557969 |
| Title : Three of the seven bphC genes of Rhodococcus erythropolis TA421, isolated from a termite ecosystem, are located on an indigenous plasmid associated with biphenyl degradation - Kosono_1997_Appl.Environ.Microbiol_63_3282 |
| Author(s) : Kosono S , Maeda M , Fuji F , Arai H , Kudo T |
| Ref : Applied Environmental Microbiology , 63 :3282 , 1997 |
| Abstract : |
| PubMedSearch : Kosono_1997_Appl.Environ.Microbiol_63_3282 |
| PubMedID: 9251216 |
| Gene_locus related to this paper: rhoer-bphD2 |