Janssen DB

References (52)

Title : Stabilizing AqdC, a Pseudomonas Quinolone Signal-Cleaving Dioxygenase from Mycobacteria, by FRESCO-Based Protein Engineering - Wullich_2021_Chembiochem_22_733
Author(s) : Wullich SC , Wijma HJ , Janssen DB , Fetzner S
Ref : Chembiochem , 22 :733 , 2021
PubMedID: 33058333
Gene_locus related to this paper: mycab-x8en65

Title : Ultrahigh-throughput discovery of promiscuous enzymes by picodroplet functional metagenomics - Colin_2015_Nat.Commun_6_10008
Author(s) : Colin PY , Kintses B , Gielen F , Miton CM , Fischer G , Mohamed MF , Hyvonen M , Morgavi DP , Janssen DB , Hollfelder F
Ref : Nat Commun , 6 :10008 , 2015
PubMedID: 26639611
Gene_locus related to this paper: 9bact-KP212148

Title : A Pseudomonas putida strain genetically engineered for 1,2,3-trichloropropane bioremediation - Samin_2014_Appl.Environ.Microbiol_80_5467
Author(s) : Samin G , Pavlova M , Arif MI , Postema CP , Damborsky J , Janssen DB
Ref : Applied Environmental Microbiology , 80 :5467 , 2014
PubMedID: 24973068

Title : Computational library design for increasing haloalkane dehalogenase stability - Floor_2014_Chembiochem_15_1660
Author(s) : Floor RJ , Wijma HJ , Colpa DI , Ramos-Silva A , Jekel PA , Szymanski W , Feringa BL , Marrink SJ , Janssen DB
Ref : Chembiochem , 15 :1660 , 2014
PubMedID: 24976371

Title : Novel dehalogenase mechanism for 2,3-dichloro-1-propanol utilization in Pseudomonas putida strain MC4 - Arif_2012_Appl.Environ.Microbiol_78_6128
Author(s) : Arif MI , Samin G , van Leeuwen JG , Oppentocht J , Janssen DB
Ref : Applied Environmental Microbiology , 78 :6128 , 2012
PubMedID: 22752160
Gene_locus related to this paper: psepu-a0a083utf1 , psepu-a0a083uhh3

Title : Dynamic Kinetic Resolution Process Employing Haloalkane Dehalogenase - Westerbeek_2011_ACS.Catal_1_1654
Author(s) : Westerbeek A , Szymanski W , Feringa BL , Janssen DB
Ref : ACS Catal , 1 :2823 , 2011
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Title : Enantioselectivity of haloalkane dehalogenases and its modulation by surface loop engineering -
Author(s) : Prokop Z , Sato Y , Brezovsky J , Mozga T , Chaloupkova R , Koudelakova T , Jerabek P , Stepankova V , Natsume R , van Leeuwen JG , Janssen DB , Florian J , Nagata Y , Senda T , Damborsky J
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PubMedID: 20645368
Gene_locus related to this paper: braja-dhaa

Title : Improved enantioselective conversion of styrene epoxides and meso-epoxides through epoxide hydrolases with a mutated nucleophile-flanking residue - van Loo_2009_Enz.Microb.Technol_44_145
Author(s) : van Loo B , Kingma J , Heyman G , Wittenaar A , Spelberg JHL , Sonke T , Janssen DB
Ref : Enzyme and Microbial Technology , 44 :145 , 2009
PubMedID:
Gene_locus related to this paper: agrra-echA

Title : Analysis of two gene clusters involved in the degradation of 4-fluorophenol by Arthrobacter sp. strain IF1 - Ferreira_2009_Appl.Environ.Microbiol_75_7767
Author(s) : Ferreira MI , Iida T , Hasan SA , Nakamura K , Fraaije MW , Janssen DB , Kudo T
Ref : Applied Environmental Microbiology , 75 :7767 , 2009
PubMedID: 19837837
Gene_locus related to this paper: 9micc-d1mys5

Title : Inactivation of epoxide hydrolase by catalysis-induced formation of isoaspartate - van Loo_2008_FEBS.Lett_582_1581
Author(s) : van Loo B , Permentier HP , Kingma J , Baldascini H , Janssen DB
Ref : FEBS Letters , 582 :1581 , 2008
PubMedID: 18406355

Title : Metabolism of mono- and dihalogenated C1 and C2 compounds by Xanthobacter autotrophicus growing on 1,2-dichloroethane - Torz_2007_Biodegradation_18_145
Author(s) : Torz M , Wietzes P , Beschkov V , Janssen DB
Ref : Biodegradation , 18 :145 , 2007
PubMedID: 16758275

Title : Diversity and biocatalytic potential of epoxide hydrolases identified by genome analysis - van Loo_2006_Appl.Environ.Microbiol_72_2905
Author(s) : van Loo B , Kingma J , Arand M , Wubbolts MG , Janssen DB
Ref : Applied Environmental Microbiology , 72 :2905 , 2006
PubMedID: 16597997
Gene_locus related to this paper: agrra-echA , bacsu-yfhM , corsp-cEH , deira-DR2549 , myctu-ephF , nosp7-b2j4w6 , nosp7-b2iv02 , psepu-PP4624 , rhopa-q6n645 , strco-2SCG4.13 , thefy-q47qj2

Title : Acetobacter turbidans alpha-amino acid ester hydrolase: how a single mutation improves an antibiotic-producing enzyme - Barends_2006_J.Biol.Chem_281_5804
Author(s) : Barends TR , Polderman-Tijmes JJ , Jekel PA , Williams C , Wybenga G , Janssen DB , Dijkstra BW
Ref : Journal of Biological Chemistry , 281 :5804 , 2006
PubMedID: 16377627
Gene_locus related to this paper: acepa-AEHA

Title : Bacterial degradation of xenobiotic compounds: evolution and distribution of novel enzyme activities - Janssen_2005_Environ.Microbiol_7_1868
Author(s) : Janssen DB , Dinkla IJ , Poelarends GJ , Terpstra P
Ref : Environ Microbiol , 7 :1868 , 2005
PubMedID: 16309386

Title : Evolving haloalkane dehalogenases - Janssen_2004_Curr.Opin.Chem.Biol_8_150
Author(s) : Janssen DB
Ref : Curr Opin Chemical Biology , 8 :150 , 2004
PubMedID: 15062775

Title : Directed evolution of epoxide hydrolase from A. radiobacter toward higher enantioselectivity by error-prone PCR and DNA shuffling - van Loo_2004_Chem.Biol_11_981
Author(s) : van Loo B , Spelberg JH , Kingma J , Sonke T , Wubbolts MG , Janssen DB
Ref : Chemical Biology , 11 :981 , 2004
PubMedID: 15271356
Gene_locus related to this paper: agrra-echA

Title : X-ray analysis of two antibiotic-synthesizing bacterial ester hydrolases: preliminary results - Barends_2003_Acta.Crystallogr.D.Biol.Crystallogr_59_158
Author(s) : Barends TR , Hensgens CM , Polderman-Tijmes JJ , Jekel PA , de Vries E , Janssen DB , Dijkstra BW
Ref : Acta Crystallographica D Biol Crystallogr , 59 :158 , 2003
PubMedID: 12499556

Title : Steady-state kinetics and tryptophan fluorescence properties of halohydrin dehalogenase from Agrobacterium radiobacter. Roles of W139 and W249 in the active site and halide-induced conformational change - Tang_2003_Biochemistry_42_14057
Author(s) : Tang L , van Merode AE , Lutje Spelberg JH , Fraaije MW , Janssen DB
Ref : Biochemistry , 42 :14057 , 2003
PubMedID: 14636074

Title : Catalytic mechanism of the maloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26 - Prokop_2003_J.Biol.Chem_278_45094
Author(s) : Prokop Z , Monincova M , Chaloupkova R , Klvana M , Nagata Y , Janssen DB , Damborsky J
Ref : Journal of Biological Chemistry , 278 :45094 , 2003
PubMedID: 12952988
Gene_locus related to this paper: sphpi-linb

Title : Biocatalytic conversion of epoxides - de Vries_2003_Curr.Opin.Biotechnol_14_414
Author(s) : de Vries EJ , Janssen DB
Ref : Curr Opin Biotechnol , 14 :414 , 2003
PubMedID: 12943851

Title : Steady-state and pre-steady-state kinetic analysis of halopropane conversion by a rhodococcus haloalkane dehalogenase - Bosma_2003_Biochemistry_42_8047
Author(s) : Bosma T , Pikkemaat MG , Kingma J , Dijk J , Janssen DB
Ref : Biochemistry , 42 :8047 , 2003
PubMedID: 12834356

Title : The sequence and crystal structure of the alpha -amino acid ester hydrolase from Xanthomonas citri define a new family of beta -lactam antibiotic acylases - Barends_2003_J.Biol.Chem_278_23076
Author(s) : Barends TR , Polderman-Tijmes JJ , Jekel PA , Hensgens CM , de Vries EJ , Janssen DB , Dijkstra BW
Ref : Journal of Biological Chemistry , 278 :23076 , 2003
PubMedID: 12684501
Gene_locus related to this paper: xanax-GAA

Title : Molecular dynamics simulations as a tool for improving protein stability - Pikkemaat_2002_Protein.Eng_15_185
Author(s) : Pikkemaat MG , Linssen AB , Berendsen HJ , Janssen DB
Ref : Protein Engineering , 15 :185 , 2002
PubMedID: 11932489

Title : Identification of the catalytic residues of alpha-amino acid ester hydrolase from Acetobacter turbidans by labeling and site-directed mutagenesis - Polderman-Tijmes_2002_J.Biol.Chem_277_28474
Author(s) : Polderman-Tijmes JJ , Jekel PA , Jeronimus-Stratingh CM , Bruins AP , van Der Laan JM , Sonke T , Janssen DB
Ref : Journal of Biological Chemistry , 277 :28474 , 2002
PubMedID: 12011065

Title : Cloning, Sequence Analysis, and Expression in Escherichia coli of the Gene Encoding an alpha-Amino Acid Ester Hydrolase from Acetobacter turbidans. -
Author(s) : Polderman-Tijmes JJ , Jekel PA , de Vries EJ , van Merode AE , Floris R , van Der Laan JM , Sonke T , Janssen DB
Ref : Applied Environmental Microbiology , 68 :211 , 2002
PubMedID: 11772629
Gene_locus related to this paper: acepa-AEHA

Title : Biodegradation of 1,2,3-trichloropropane through directed evolution and heterologous expression of a haloalkane dehalogenase gene - Bosma_2002_Appl.Environ.Microbiol_68_3582
Author(s) : Bosma T , Damborsky J , Stucki G , Janssen DB
Ref : Applied Environmental Microbiology , 68 :3582 , 2002
PubMedID: 12089046
Gene_locus related to this paper: rhoso-halo1

Title : Effect of mass transfer limitations on the enzymatic kinetic resolution of epoxides in a two-liquid-phase system - Baldascini_2001_Biotechnol.Bioeng_73_44
Author(s) : Baldascini H , Ganzeveld KJ , Janssen DB , Beenackers AA
Ref : Biotechnol Bioeng , 73 :44 , 2001
PubMedID: 11255151

Title : Tyrosine residues serve as proton donor in the catalytic mechanism of epoxide hydrolase from Agrobacterium radiobacter - Rink_2000_Biochemistry_39_5600
Author(s) : Rink R , Kingma J , Lutje Spelberg JH , Janssen DB
Ref : Biochemistry , 39 :5600 , 2000
PubMedID: 10820034

Title : Roles of horizontal gene transfer and gene integration in evolution of 1,3-dichloropropene- and 1,2-dibromoethane-degradative pathways - Poelarends_2000_J.Bacteriol_182_2191
Author(s) : Poelarends GJ , Kulakov LA , Larkin MJ , van Hylckama Vlieg JE , Janssen DB
Ref : Journal of Bacteriology , 182 :2191 , 2000
PubMedID: 10735862
Gene_locus related to this paper: rhoso-halo1

Title : The x-ray structure of epoxide hydrolase from Agrobacterium radiobacter AD1. An enzyme to detoxify harmful epoxides - Nardini_1999_J.Biol.Chem_274_14579
Author(s) : Nardini M , Ridder IS , Rozeboom HJ , Kalk KH , Rink R , Janssen DB , Dijkstra BW
Ref : Journal of Biological Chemistry , 274 :14579 , 1999
PubMedID: 10329649
Gene_locus related to this paper: agrra-echA

Title : Crystallographic and kinetic evidence of a collision complex formed during halide import in haloalkane dehalogenase - Pikkemaat_1999_Biochemistry_38_12052
Author(s) : Pikkemaat MG , Ridder IS , Rozeboom HJ , Kalk KH , Dijkstra BW , Janssen DB
Ref : Biochemistry , 38 :12052 , 1999
PubMedID: 10508409
Gene_locus related to this paper: xanau-halo1

Title : Mutation of tyrosine residues involved in the alkylation half reaction of epoxide hydrolase from Agrobacterium radiobacter AD1 results in improved enantioselectivity - Rink_1999_J.Am.Chem.Soc_121_7417
Author(s) : Rink R , Lutje Spelberg JH , Pieters RJ , Kingma J , Nardini M , Kellogg RM , Dijkstra BW , Janssen DB
Ref : Journal of the American Chemical Society , 121 :7417 , 1999
PubMedID:
Gene_locus related to this paper: agrra-echA

Title : Degradation of 1,2-dibromoethane by Mycobacterium sp. strain GP1 - Poelarends_1999_J.Bacteriol_181_2050
Author(s) : Poelarends GJ , van Hylckama Vlieg JE , Marchesi JR , Freitas Dos Santos LM , Janssen DB
Ref : Journal of Bacteriology , 181 :2050 , 1999
PubMedID: 10094681

Title : Kinetic analysis and X-ray structure of haloalkane dehalogenase with a modified halide-binding site - Krooshof_1998_Biochemistry_37_15013
Author(s) : Krooshof GH , Ridder IS , Tepper AW , Vos GJ , Rozeboom HJ , Kalk KH , Dijkstra BW , Janssen DB
Ref : Biochemistry , 37 :15013 , 1998
PubMedID: 9790663
Gene_locus related to this paper: xanau-halo1

Title : Kinetic mechanism of the enantioselective conversion of styrene oxide by epoxide hydrolase from Agrobacterium radiobacter AD1 - Rink_1998_Biochemistry_37_18119
Author(s) : Rink R , Janssen DB
Ref : Biochemistry , 37 :18119 , 1998
PubMedID: 9922181
Gene_locus related to this paper: agrra-echA

Title : Degradation of 1,3-dichloropropene by pseudomonas cichorii 170 - Poelarends_1998_Appl.Environ.Microbiol_64_2931
Author(s) : Poelarends GJ , Wilkens M , Larkin MJ , van Elsas JD , Janssen DB
Ref : Applied Environmental Microbiology , 64 :2931 , 1998
PubMedID: 9687453
Gene_locus related to this paper: rhoso-halo1

Title : Primary structure and catalytic mechanism of the epoxide hydrolase from Agrobacterium radiobacter AD1 - Rink_1997_J.Biol.Chem_272_14650
Author(s) : Rink R , Fennema M , Smids M , Dehmel U , Janssen DB
Ref : Journal of Biological Chemistry , 272 :14650 , 1997
PubMedID: 9169427
Gene_locus related to this paper: agrra-echA

Title : Influence of mutations of Val226 on the catalytic rate of haloalkane dehalogenase - Schanstra_1997_Protein.Eng_10_53
Author(s) : Schanstra JP , Ridder A , Kingma J , Janssen DB
Ref : Protein Engineering , 10 :53 , 1997
PubMedID: 9051734

Title : Repositioning the catalytic triad aspartic acid of haloalkane dehalogenase: effects on stability, kinetics, and structure - Krooshof_1997_Biochemistry_36_9571
Author(s) : Krooshof GH , Kwant EM , Damborsky J , Koca J , Janssen DB
Ref : Biochemistry , 36 :9571 , 1997
PubMedID: 9236003

Title : Specificity and kinetics of haloalkane dehalogenase - Schanstra_1996_J.Biol.Chem_271_14747
Author(s) : Schanstra JP , Kingma J , Janssen DB
Ref : Journal of Biological Chemistry , 271 :14747 , 1996
PubMedID: 8662955

Title : Kinetic characterization and X-ray structure of a mutant of haloalkane dehalogenase with higher catalytic activity and modified substrate range - Schanstra_1996_Biochemistry_35_13186
Author(s) : Schanstra JP , Ridder IS , Heimeriks GJ , Rink R , Poelarends GJ , Kalk KH , Dijkstra BW , Janssen DB
Ref : Biochemistry , 35 :13186 , 1996
PubMedID: 8855957
Gene_locus related to this paper: xanau-halo1

Title : Replacement of tryptophan residues in haloalkane dehalogenase reduces halide binding and catalytic activity - Kennes_1995_Eur.J.Biochem_228_403
Author(s) : Kennes C , Pries F , Krooshof GH , Bokma E , Kingma J , Janssen DB
Ref : European Journal of Biochemistry , 228 :403 , 1995
PubMedID: 7705355

Title : Histidine 289 is essential for hydrolysis of the alkyl-enzyme intermediate of haloalkane dehalogenase - Pries_1995_J.Biol.Chem_270_10405
Author(s) : Pries F , Kingma J , Krooshof GH , Jeronimus-Stratingh CM , Bruins AP , Janssen DB
Ref : Journal of Biological Chemistry , 270 :10405 , 1995
PubMedID: 7737973

Title : Sequence analysis of the upstream region of dhlB, the gene encoding haloalkanoic acid dehalogenase of Xanthobacter autotrophicus GJ10 - van der Ploeg_1995_Biodegradation_6_257
Author(s) : van der Ploeg J , Janssen DB
Ref : Biodegradation , 6 :257 , 1995
PubMedID: 7580000
Gene_locus related to this paper: xanau-halo1

Title : Site-directed mutagenesis and oxygen isotope incorporation studies of the nucleophilic aspartate of haloalkane dehalogenase - Pries_1994_Biochemistry_33_1242
Author(s) : Pries F , Kingma J , Pentenga M , van Pouderoyen G , Jeronimus-Stratingh CM , Bruins AP , Janssen DB
Ref : Biochemistry , 33 :1242 , 1994
PubMedID: 8110757

Title : Genetics and biochemistry of 1,2-dichloroethane degradation - Janssen_1994_Biodegradation_5_249
Author(s) : Janssen DB , van der Ploeg JR , Pries F
Ref : Biodegradation , 5 :249 , 1994
PubMedID: 7765836

Title : Crystallographic and fluorescence studies of the interaction of haloalkane dehalogenase with halide ions. Studies with halide compounds reveal a halide binding site in the active site - Verschueren_1993_Biochemistry_32_9031
Author(s) : Verschueren KH , Kingma J , Rozeboom HJ , Kalk KH , Janssen DB , Dijkstra BW
Ref : Biochemistry , 32 :9031 , 1993
PubMedID: 8369276
Gene_locus related to this paper: xanau-halo1

Title : Characterization of the haloacid dehalogenase from Xanthobacter autotrophicus GJ10 and sequencing of the dhlB gene - van der Ploeg_1991_J.Bacteriol_173_7925
Author(s) : van der Ploeg J , van Hall G , Janssen DB
Ref : Journal of Bacteriology , 173 :7925 , 1991
PubMedID: 1744048
Gene_locus related to this paper: xanau-halo1

Title : Characterization of the epoxide hydrolase from an epichlorohydrin-degrading Pseudomonas sp - Jacobs_1991_Eur.J.Biochem_202_1217
Author(s) : Jacobs MH , Van den Wijngaard AJ , Pentenga M , Janssen DB
Ref : European Journal of Biochemistry , 202 :1217 , 1991
PubMedID: 1662605

Title : Cloning of 1,2-dichloroethane degradation genes of Xanthobacter autotrophicus GJ10 and expression and sequencing of the dhlA gene - Janssen_1989_J.Bacteriol_171_6791
Author(s) : Janssen DB , Pries F , van der Ploeg J , Kazemier B , Terpstra P , Witholt B
Ref : Journal of Bacteriology , 171 :6791 , 1989
PubMedID: 2687254
Gene_locus related to this paper: xanau-halo1

Title : Crystallization of haloalkane dehalogenase from Xanthobacter autotrophicus GJ10 - Rozeboom_1988_J.Mol.Biol_200_611
Author(s) : Rozeboom HJ , Kingma J , Janssen DB , Dijkstra BW
Ref : Journal of Molecular Biology , 200 :611 , 1988
PubMedID: 3398051
Gene_locus related to this paper: xanau-halo1

Title : Purification and characterization of hydrolytic haloalkane dehalogenase from Xanthobacter autotrophicus GJ10 - Keuning_1985_J.Bacteriol_163_635
Author(s) : Keuning S , Janssen DB , Witholt B
Ref : Journal of Bacteriology , 163 :635 , 1985
PubMedID: 4019411
Gene_locus related to this paper: xanau-halo1