Gene_Locus Report

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Gene_locus Report for: cocsc-i0yin5

Coccomyxa subellipsoidea (strain C-169) (Green microalga). Alpha/beta-hydrolase

Relationship
Family|Glutamyl_Peptidase_S9
Block| X
Position in NCBI Life Tree|Coccomyxa subellipsoidea
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Chlorophyta: N E > Trebouxiophyceae: N E > Trebouxiophyceae incertae sedis: N E > Coccomyxaceae: N E > Coccomyxa: N E > Coccomyxa subellipsoidea: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : AGSI01000025, XP_005642798
1 UniProt : I0YIN5
1 UniProt : I0YIN5
1 Interpro : I0YIN5
1 Pfam : I0YIN5
1 PIRSF : I0YIN5
1 SUPERFAM : I0YIN5
Sequence
Graphical view for this peptide sequence: cocsc-i0yin5
Colored MSA for Glutamyl_Peptidase_S9 (raw)
MLPPQEIIDLVDVPPEPNLSFSPDRTQVLQLYRPPPLPPISEVARPELKL
AGLRIDAETNSGSRMGYYLGLSIVQMTDDLVLPAPKERTTPIVGYPEGLW
INLVSWSQDGRHIAFTVRSPGGPSDPPRQPLELWVAETATGQARRLLKSP
EQGLSSIFDDYMWVDNDTIGAVVIPPGRGPPPEKPLVPIGPNIQDNTSGK
TSQARTYPDLLKSPHDEELLEHYCQSNLIYIKVSTGEVTQLGGTKLYTSF
APSPDARFLLVAWLERPFSYTVPCGRFPKRVQLWDRSGKVLREMAYLPLA
EDIPILFNSCRQGPRSIDWRSDRDAEITWIEAQDGGDPSVEVSPRDIMYR
LPADEILADADAAPHHLAHTDLRCGGIAWGDDSLALLYESWYKTRRSRVW
TIAPGDPARPPQLLFDRDYEDAYMDPGSPANRRTKRGTYVLAQVEGTRQL
IMQGTGASPEGNRPFVELLDVDTKETRRLWQSSPPFLEYTMNLLNDWDDA
PISLEGLSLLMTRETVRDTPQYYIMRLSSNGAGPQLRCLSDYPHPYPSLK
DLQKEVIRYKREDGLDLTATLYLPPGYDKERDGRLPCILWAYPREFKTKD
AAGQMRKSPHQFSGIGSQSPLLWLVRGYAVLDGPTMPIVAETDDAEPNDT
YVPQLVASAKAAVEEADRRGVVDTSRIAVGGHSYGAFMAANLLAHAPELF
ACGIAKSGAYNRTLTPFGFQAEERTIWQAPDVYAAMSPFLQADKVKRPLL
LVHGEDDNNTGTFPMQSERFYSALKGHGATTRLVLLPHESHGYSARESVM
HVLAEMDGWLRRYCEAPETPQSKM
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MLPPQEIIDLVDVPPEPNLSFSPDRTQVLQLYRPPPLPPISEVARPELKL
AGLRIDAETNSGSRMGYYLGLSIVQMTDDLVLPAPKERTTPIVGYPEGLW
INLVSWSQDGRHIAFTVRSPGGPSDPPRQPLELWVAETATGQARRLLKSP
EQGLSSIFDDYMWVDNDTIGAVVIPPGRGPPPEKPLVPIGPNIQDNTSGK
TSQARTYPDLLKSPHDEELLEHYCQSNLIYIKVSTGEVTQLGGTKLYTSF
APSPDARFLLVAWLERPFSYTVPCGRFPKRVQLWDRSGKVLREMAYLPLA
EDIPILFNSCRQGPRSIDWRSDRDAEITWIEAQDGGDPSVEVSPRDIMYR
LPADEILADADAAPHHLAHTDLRCGGIAWGDDSLALLYESWYKTRRSRVW
TIAPGDPARPPQLLFDRDYEDAYMDPGSPANRRTKRGTYVLAQVEGTRQL
IMQGTGASPEGNRPFVELLDVDTKETRRLWQSSPPFLEYTMNLLNDWDDA
PISLEGLSLLMTRETVRDTPQYYIMRLSSNGAGPQLRCLSDYPHPYPSLK
DLQKEVIRYKREDGLDLTATLYLPPGYDKERDGRLPCILWAYPREFKTKD
AAGQMRKSPHQFSGIGSQSPLLWLVRGYAVLDGPTMPIVAETDDAEPNDT
YVPQLVASAKAAVEEADRRGVVDTSRIAVGGHSYGAFMAANLLAHAPELF
ACGIAKSGAYNRTLTPFGFQAEERTIWQAPDVYAAMSPFLQADKVKRPLL
LVHGEDDNNTGTFPMQSERFYSALKGHGATTRLVLLPHESHGYSARESVM
HVLAEMDGWLRRYCEAPETPQSKM


Reference
    Title: The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation
    Blanc G, Agarkova I, Grimwood J, Kuo A, Brueggeman A, Dunigan DD, Gurnon J, Ladunga I, Lindquist E and Van Etten JL <11 more author(s)>
    Ref: Genome Biol, 13:R39, 2012 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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