Kuo A

References (27)

Title : Epidemiology, Patient Characteristics, and Treatment Patterns of Myasthenia Gravis in Taiwan: A Population-Based Study - Tsai_2024_Neurol.Ther__
Author(s) : Tsai NW , Chien LN , Hung C , Kuo A , Chiu YT , Lin HW , Jian LS , Chou KP , Yeh JH
Ref : Neurol Ther , : , 2024
PubMedID: 38678112

Title : Salinity tolerance mechanisms of an Arctic Pelagophyte using comparative transcriptomic and gene expression analysis - Freyria_2022_Commun.Biol_5_500
Author(s) : Freyria NJ , Kuo A , Chovatia M , Johnson J , Lipzen A , Barry KW , Grigoriev IV , Lovejoy C
Ref : Commun Biol , 5 :500 , 2022
PubMedID: 35614207

Title : Serial femtosecond and serial synchrotron crystallography can yield data of equivalent quality: A systematic comparison - Mehrabi_2021_Sci.Adv_7_eabf1380
Author(s) : Mehrabi P , Bucker R , Bourenkov G , Ginn HM , von Stetten D , Muller-Werkmeister HM , Kuo A , Morizumi T , Eger BT , Ou WL , Oghbaey S , Sarracini A , Besaw JE , Pare-Labrosse O , Meier S , Schikora H , Tellkamp F , Marx A , Sherrell DA , Axford D , Owen RL , Ernst OP , Pai EF , Schulz EC , Miller RJD
Ref : Sci Adv , 7 : , 2021
PubMedID: 33731353
Gene_locus related to this paper: rhopa-q6nam1

Title : Fixed-target serial oscillation crystallography at room temperature - Wierman_2019_IUCrJ_6_305
Author(s) : Wierman JL , Pare-Labrosse O , Sarracini A , Besaw JE , Cook MJ , Oghbaey S , Daoud H , Mehrabi P , Kriksunov I , Kuo A , Schuller DJ , Smith S , Ernst OP , Szebenyi DME , Gruner SM , Miller RJD , Finke AD
Ref : IUCrJ , 6 :305 , 2019
PubMedID: 30867928
Gene_locus related to this paper: rhopa-q6nam1

Title : Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species - Kjaerbolling_2018_Proc.Natl.Acad.Sci.U.S.A_115_E753
Author(s) : Kjaerbolling I , Vesth TC , Frisvad JC , Nybo JL , Theobald S , Kuo A , Bowyer P , Matsuda Y , Mondo S , Lyhne EK , Kogle ME , Clum A , Lipzen A , Salamov A , Ngan CY , Daum C , Chiniquy J , Barry K , LaButti K , Haridas S , Simmons BA , Magnuson JK , Mortensen UH , Larsen TO , Grigoriev IV , Baker SE , Andersen MR
Ref : Proc Natl Acad Sci U S A , 115 :E753 , 2018
PubMedID: 29317534
Gene_locus related to this paper: 9euro-a0a0f8xhh7 , 9euro-a0a2t5ll04 , aspn1-nvfd

Title : Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi - Knapp_2018_Sci.Rep_8_6321
Author(s) : Knapp DG , Nemeth JB , Barry K , Hainaut M , Henrissat B , Johnson J , Kuo A , Lim JHP , Lipzen A , Nolan M , Ohm RA , Tamas L , Grigoriev IV , Spatafora JW , Nagy LG , Kovacs GM
Ref : Sci Rep , 8 :6321 , 2018
PubMedID: 29679020
Gene_locus related to this paper: 9pleo-a0a2v1dn29 , 9helo-a0a2v1c5l1 , 9pleo-a0a2v1dti3 , 9helo-a0a2v1bts1 , 9helo-a0a2v1cbe5 , 9pleo-a0a2v1cxz2 , 9pleo-a0a2v1d1n3 , 9pleo-a0a2v1db80 , 9pleo-a0a2v1ddg5 , 9pleo-a0a2v1dij1 , 9pleo-a0a2v1dp20 , 9pleo-a0a2v1e6x2 , 9pleo-a0a2v1ee64 , 9helo-a0a2v1cbn2 , 9helo-a0a2v1b581 , 9pleo-a0a2v1e5g2 , corcc-a0a2t2nt04 , 9helo-a0a2v1buk5

Title : Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists - Martino_2018_New.Phytol_217_1213
Author(s) : Martino E , Morin E , Grelet GA , Kuo A , Kohler A , Daghino S , Barry KW , Cichocki N , Clum A , Dockter RB , Hainaut M , Kuo RC , LaButti K , Lindahl BD , Lindquist EA , Lipzen A , Khouja HR , Magnuson J , Murat C , Ohm RA , Singer SW , Spatafora JW , Wang M , Veneault-Fourrey C , Henrissat B , Grigoriev IV , Martin FM , Perotto S
Ref : New Phytol , 217 :1213 , 2018
PubMedID: 29315638
Gene_locus related to this paper: amore-a0a2t3axk4 , amore-a0a2t3avs4 , amore-a0a2t3ay04 , amore-a0a2t3aph0

Title : Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus - de Vries_2017_Genome.Biol_18_28
Author(s) : de Vries RP , Riley R , Wiebenga A , Aguilar-Osorio G , Amillis S , Uchima CA , Anderluh G , Asadollahi M , Askin M , Barry K , Battaglia E , Bayram O , Benocci T , Braus-Stromeyer SA , Caldana C , Canovas D , Cerqueira GC , Chen F , Chen W , Choi C , Clum A , Dos Santos RA , Damasio AR , Diallinas G , Emri T , Fekete E , Flipphi M , Freyberg S , Gallo A , Gournas C , Habgood R , Hainaut M , Harispe ML , Henrissat B , Hilden KS , Hope R , Hossain A , Karabika E , Karaffa L , Karanyi Z , Krasevec N , Kuo A , Kusch H , LaButti K , Lagendijk EL , Lapidus A , Levasseur A , Lindquist E , Lipzen A , Logrieco AF , Maccabe A , Makela MR , Malavazi I , Melin P , Meyer V , Mielnichuk N , Miskei M , Molnar AP , Mule G , Ngan CY , Orejas M , Orosz E , Ouedraogo JP , Overkamp KM , Park HS , Perrone G , Piumi F , Punt PJ , Ram AF , Ramon A , Rauscher S , Record E , Riano-Pachon DM , Robert V , Rohrig J , Ruller R , Salamov A , Salih NS , Samson RA , Sandor E , Sanguinetti M , Schutze T , Sepcic K , Shelest E , Sherlock G , Sophianopoulou V , Squina FM , Sun H , Susca A , Todd RB , Tsang A , Unkles SE , van de Wiele N , van Rossen-Uffink D , Oliveira JV , Vesth TC , Visser J , Yu JH , Zhou M , Andersen MR , Archer DB , Baker SE , Benoit I , Brakhage AA , Braus GH , Fischer R , Frisvad JC , Goldman GH , Houbraken J , Oakley B , Pocsi I , Scazzocchio C , Seiboth B , vanKuyk PA , Wortman J , Dyer PS , Grigoriev IV
Ref : Genome Biol , 18 :28 , 2017
PubMedID: 28196534
Gene_locus related to this paper: asptu-a0a1l9nhd0 , aspve-a0a1l9pxx8 , aspve-a0a1l9q4m3 , aspwe-a0a1l9s133 , 9euro-a0a1l9t3v9 , aspwe-a0a1l9rcx6 , aspna-g3y5a6 , aspgl-a0a1l9v4d3 , 9euro-a0a1l9sa36 , aspsb-a0a319eji6 , aspve-a0a1l9px96 , 9euro-a0a1l9tay1 , aspgl-a0a1l9vbc0 , aspc5-a0a1r3rh65 , 9euro-a0a2v5i956 , aspwe-a0a1l9rpp6 , aspna-g3xpw9 , aspve-a0a1l9plv1 , 9euro-a0a1l9tk47 , aspve-a0a1l9pde9 , aspve-a0a1l9pz72 , aspwe-a0a1l9rde6 , 9euro-a0a1l9tdb5 , aspkw-g7xq95 , aspbc-a0a1l9u6h4 , aspbc-a0a1l9u2l4 , asptc-a0a1l9mx83 , aspgl-a0a1l9ve90 , aspve-a0a1l9pvz9 , 9euro-a0a1l9tdh3 , aspc5-a0a1r3rmn9 , aspwe-a0a1l9rlq2 , asptc-a0a1l9nby7 , aspng-a0a100i8t9 , aspc5-a0a1r3rem6 , aspbc-a0a1l9uy89 , aspa1-anee , aspa1-aneh , aspa1-acrc , aspbc-alba , aspa1-acui

Title : Characterization of four endophytic fungi as potential consolidated bioprocessing hosts for conversion of lignocellulose into advanced biofuels - Wu_2017_Appl.Microbiol.Biotechnol_101_2603
Author(s) : Wu W , Davis RW , Tran-Gyamfi MB , Kuo A , LaButti K , Mihaltcheva S , Hundley H , Chovatia M , Lindquist E , Barry K , Grigoriev IV , Henrissat B , Gladden JM
Ref : Applied Microbiology & Biotechnology , 101 :2603 , 2017
PubMedID: 28078400
Gene_locus related to this paper: 9pezi-a0a1y2u1s8 , 9pezi-a0a1y2x077 , 9pezi-a0a1y2vv92 , 9pezi-a0a1y2txs8 , 9pezi-a0a1y2wzb7 , 9pezi-a0a1y2ufj7 , 9pezi-a0a1y2vvc9 , 9pezi-a0a1y2w3w4

Title : Population genomics of picophytoplankton unveils novel chromosome hypervariability - Blanc-Mathieu_2017_Sci.Adv_3_e1700239
Author(s) : Blanc-Mathieu R , Krasovec M , Hebrard M , Yau S , Desgranges E , Martin J , Schackwitz W , Kuo A , Salin G , Donnadieu C , Desdevises Y , Sanchez-Ferandin S , Moreau H , Rivals E , Grigoriev IV , Grimsley N , Eyre-Walker A , Piganeau G
Ref : Sci Adv , 3 :e1700239 , 2017
PubMedID: 28695208
Gene_locus related to this paper: ostta-q01g03

Title : The genome of Xylona heveae provides a window into fungal endophytism - Gazis_2016_Fungal.Biol_120_26
Author(s) : Gazis R , Kuo A , Riley R , LaButti K , Lipzen A , Lin J , Amirebrahimi M , Hesse CN , Spatafora JW , Henrissat B , Hainaut M , Grigoriev IV , Hibbett DS
Ref : Fungal Biol , 120 :26 , 2016
PubMedID: 26693682
Gene_locus related to this paper: 9pezi-a0a165f9w1 , 9pezi-a0a165fsb2 , 9pezi-a0a165gpf2 , 9pezi-a0a164zp96 , xylht-a0a165aju9 , xylht-a0a165jye6 , xylht-a0a165jir4

Title : Pan genome of the phytoplankton Emiliania underpins its global distribution - Read_2013_Nature_499_209
Author(s) : Read BA , Kegel J , Klute MJ , Kuo A , Lefebvre SC , Maumus F , Mayer C , Miller J , Monier A , Salamov A , Young J , Aguilar M , Claverie JM , Frickenhaus S , Gonzalez K , Herman EK , Lin YC , Napier J , Ogata H , Sarno AF , Shmutz J , Schroeder D , de Vargas C , Verret F , von Dassow P , Valentin K , Van de Peer Y , Wheeler G , Dacks JB , Delwiche CF , Dyhrman ST , Glockner G , John U , Richards T , Worden AZ , Zhang X , Grigoriev IV
Ref : Nature , 499 :209 , 2013
PubMedID: 23760476

Title : The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes - Floudas_2012_Science_336_1715
Author(s) : Floudas D , Binder M , Riley R , Barry K , Blanchette RA , Henrissat B , Martinez AT , Otillar R , Spatafora JW , Yadav JS , Aerts A , Benoit I , Boyd A , Carlson A , Copeland A , Coutinho PM , de Vries RP , Ferreira P , Findley K , Foster B , Gaskell J , Glotzer D , Gorecki P , Heitman J , Hesse C , Hori C , Igarashi K , Jurgens JA , Kallen N , Kersten P , Kohler A , Kues U , Kumar TK , Kuo A , LaButti K , Larrondo LF , Lindquist E , Ling A , Lombard V , Lucas S , Lundell T , Martin R , McLaughlin DJ , Morgenstern I , Morin E , Murat C , Nagy LG , Nolan M , Ohm RA , Patyshakuliyeva A , Rokas A , Ruiz-Duenas FJ , Sabat G , Salamov A , Samejima M , Schmutz J , Slot JC , St John F , Stenlid J , Sun H , Sun S , Syed K , Tsang A , Wiebenga A , Young D , Pisabarro A , Eastwood DC , Martin F , Cullen D , Grigoriev IV , Hibbett DS
Ref : Science , 336 :1715 , 2012
PubMedID: 22745431
Gene_locus related to this paper: aurde-j0d098 , aurde-j0dc31 , glota-s7rlc1 , fompi-s8f7s4 , dacsp-m5fpg2 , dicsq-r7sm16 , dacsp-m5g7q5 , dacsp-m5fr12 , glota-s7q5w3 , fompi-s8f826.1 , fompi-s8f826.2 , dicsq-r7sy09 , glota-s7rt87 , dicsq-r7t032 , glota-s7rym7 , fompi-s8fiv2 , dacsp-m5gda3.2 , dicsq-r7swi6 , dacsp-m5frf2 , fompi-s8ebb6 , dicsq-r7sln3 , dicsq-r7sya6 , dacsp-m5g7g1 , dicsq-r7syx7 , dicsq-r7sx57 , dacsp-m5fps7 , glota-s7pwi7 , dicsq-r7swj6 , fompi-s8ejq6 , dicsq-r7spc3 , glota-s7q258 , dacsp-m5ft65 , glota-s7q3m7 , fompi-s8dkc7 , glota-s7q1z1 , fompi-s8eqi2 , glota-s7q1z8 , fompi-s8du50 , dacsp-m5gg33 , dacsp-m5g3a7 , fompi-s8ecd7 , fompi-s8dps1 , dacsp-m5fwr0 , dicsq-r7sub7 , glota-s7q8k9 , fompi-s8ffc3 , dacsp-m5g2f9 , fompi-s8ecc2 , dacsp-m5g868 , fompi-s8f890 , dicsq-r7t1a8 , fompi-s8ebx4 , fompi-s8eb97 , glota-s7q222 , glota-s7puf0 , fompi-s8f6v9 , dacsp-m5g0z2 , dacsp-m5gdh9 , fompi-s8fb37 , dacsp-m5fy91 , glota-s7q5v6 , fompi-s8fl44 , dicsq-r7stv9 , dicsq-r7szk3 , fompi-s8epq9 , glota-s7rh56 , dacsp-m5gbt1 , punst-r7s3x9 , punst-r7s0t5 , glota-s7q312 , glota-s7rhh6 , dicsq-r7t117 , dicsq-r7slz3

Title : The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation - Blanc_2012_Genome.Biol_13_R39
Author(s) : Blanc G , Agarkova I , Grimwood J , Kuo A , Brueggeman A , Dunigan DD , Gurnon J , Ladunga I , Lindquist E , Lucas S , Pangilinan J , Proschold T , Salamov A , Schmutz J , Weeks D , Yamada T , Lomsadze A , Borodovsky M , Claverie JM , Grigoriev IV , Van Etten JL
Ref : Genome Biol , 13 :R39 , 2012
PubMedID: 22630137
Gene_locus related to this paper: 9chlo-i0z4k0 , 9chlo-i0ylt0 , cocsc-i0ytb9 , cocsc-i0yin5

Title : Comparative genomics of xylose-fermenting fungi for enhanced biofuel production - Wohlbach_2011_Proc.Natl.Acad.Sci.U.S.A_108_13212
Author(s) : Wohlbach DJ , Kuo A , Sato TK , Potts KM , Salamov AA , LaButti KM , Sun H , Clum A , Pangilinan JL , Lindquist EA , Lucas S , Lapidus A , Jin M , Gunawan C , Balan V , Dale BE , Jeffries TW , Zinkel R , Barry KW , Grigoriev IV , Gasch AP
Ref : Proc Natl Acad Sci U S A , 108 :13212 , 2011
PubMedID: 21788494
Gene_locus related to this paper: cantc-g3b3r0 , spapn-g3ap60 , spapn-g3aif9 , cantc-g3axw7

Title : The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex - Blanc_2010_Plant.Cell_22_2943
Author(s) : Blanc G , Duncan G , Agarkova I , Borodovsky M , Gurnon J , Kuo A , Lindquist E , Lucas S , Pangilinan J , Polle J , Salamov A , Terry A , Yamada T , Dunigan DD , Grigoriev IV , Claverie JM , Van Etten JL
Ref : Plant Cell , 22 :2943 , 2010
PubMedID: 20852019
Gene_locus related to this paper: chlva-e1z3j3 , chlva-e1z3n9 , chlva-e1z620 , chlva-e1z882 , chlva-e1zd56 , chlva-e1zdd9 , chlva-e1zde0 , chlva-e1ze02 , chlva-e1zeh7 , chlva-e1zhu4 , chlva-e1zie3 , chlva-e1zii9 , chlva-e1zmj6 , chlva-e1ztt0 , chlva-e1z5k1 , chlva-e1ztf4

Title : The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion - Coleman_2009_PLoS.Genet_5_e1000618
Author(s) : Coleman JJ , Rounsley SD , Rodriguez-Carres M , Kuo A , Wasmann CC , Grimwood J , Schmutz J , Taga M , White GJ , Zhou S , Schwartz DC , Freitag M , Ma LJ , Danchin EG , Henrissat B , Coutinho PM , Nelson DR , Straney D , Napoli CA , Barker BM , Gribskov M , Rep M , Kroken S , Molnar I , Rensing C , Kennell JC , Zamora J , Farman ML , Selker EU , Salamov A , Shapiro H , Pangilinan J , Lindquist E , Lamers C , Grigoriev IV , Geiser DM , Covert SF , Temporini E , Vanetten HD
Ref : PLoS Genet , 5 :e1000618 , 2009
PubMedID: 19714214
Gene_locus related to this paper: fusso-cutas , nech7-c7yh18 , nech7-c7yir8 , nech7-c7yiz6 , nech7-c7yjl4 , nech7-c7yjp7 , nech7-c7yjq0 , nech7-c7ymg9 , nech7-c7ymv6 , nech7-c7yna5 , nech7-c7ynt6 , nech7-c7yq59 , nech7-c7yq86 , nech7-c7yqb0 , nech7-c7yqx3 , nech7-c7ysz7 , nech7-c7ysz8 , nech7-c7ytb2 , nech7-c7yum7 , nech7-c7yvb1 , nech7-c7yvb8 , nech7-c7yvf1 , nech7-c7yvq8 , nech7-c7yw21 , nech7-c7yx47 , nech7-c7yx92 , nech7-c7yxe7 , nech7-c7yxq5 , nech7-c7yxz4 , nech7-c7yy47 , nech7-c7yyj7 , nech7-c7yym7 , nech7-c7z0d7 , nech7-c7z0s1 , nech7-c7z1g9 , nech7-c7z1k9 , nech7-c7z2k4 , nech7-c7z2m9 , nech7-c7z2z2 , nech7-c7z3z3 , nech7-c7z4a4 , nech7-c7z5n1 , nech7-c7z5y2 , nech7-c7z6g5 , nech7-c7z7d0 , nech7-c7z7w8 , nech7-c7z8q7 , nech7-c7z9e7 , nech7-c7z073 , nech7-c7z354 , nech7-c7z389 , nech7-c7z688 , nech7-c7z855 , nech7-c7z987 , nech7-c7za94 , nech7-c7zah0 , nech7-c7zb79 , nech7-c7zbr8 , nech7-c7zcd1 , nech7-c7zdx8 , nech7-c7ze42 , nech7-c7ze84 , nech7-c7zed8 , nech7-c7zeh0 , nech7-c7zes2 , nech7-c7zgw2 , nech7-c7zha0 , nech7-c7zhy2 , nech7-c7zi55 , nech7-c7zig4 , nech7-c7zjg0 , nech7-c7zjv2 , nech7-c7zk96 , nech7-c7zkb5 , nech7-c7zkh4 , nech7-c7zla9 , nech7-c7zld2 , nech7-c7zlz1 , nech7-c7zm00 , nech7-c7zmn4 , nech7-c7zmu6 , nech7-c7zp06 , nech7-c7zp78 , nech7-c7zq58 , nech7-c7zq86 , nech7-c7zqb5 , nech7-c7zqk4 , nech7-c7zqp9 , nech7-c7zr59 , nech7-c7zrh2 , nech7-c7zrh3 , nech7-dapb , nech7-kex1 , nech7-c7zgl9 , nech7-c7z935 , nech7-c7znc0 , nech7-c7yiq8 , nech7-c7yiq7 , nech7-c7zhu0 , nech7-c7yw61 , nech7-c7yqd3 , nech7-c7zkb6 , nech7-c7z3b4 , nech7-c7ytr4 , nech7-c7zgf7 , 9hypo-a0a3m2s2j6 , nech7-c7yq54 , fusv7-cbpya

Title : The Phaeodactylum genome reveals the evolutionary history of diatom genomes - Bowler_2008_Nature_456_239
Author(s) : Bowler C , Allen AE , Badger JH , Grimwood J , Jabbari K , Kuo A , Maheswari U , Martens C , Maumus F , Otillar RP , Rayko E , Salamov A , Vandepoele K , Beszteri B , Gruber A , Heijde M , Katinka M , Mock T , Valentin K , Verret F , Berges JA , Brownlee C , Cadoret JP , Chiovitti A , Choi CJ , Coesel S , De Martino A , Detter JC , Durkin C , Falciatore A , Fournet J , Haruta M , Huysman MJ , Jenkins BD , Jiroutova K , Jorgensen RE , Joubert Y , Kaplan A , Kroger N , Kroth PG , La Roche J , Lindquist E , Lommer M , Martin-Jezequel V , Lopez PJ , Lucas S , Mangogna M , McGinnis K , Medlin LK , Montsant A , Oudot-Le Secq MP , Napoli C , Obornik M , Parker MS , Petit JL , Porcel BM , Poulsen N , Robison M , Rychlewski L , Rynearson TA , Schmutz J , Shapiro H , Siaut M , Stanley M , Sussman MR , Taylor AR , Vardi A , von Dassow P , Vyverman W , Willis A , Wyrwicz LS , Rokhsar DS , Weissenbach J , Armbrust EV , Green BR , Van de Peer Y , Grigoriev IV
Ref : Nature , 456 :239 , 2008
PubMedID: 18923393
Gene_locus related to this paper: phatc-b7fp91 , phatc-b7fqd3 , phatc-b7frf9 , phatc-b7fry8 , phatc-b7ftw8 , phatc-b7fv70 , phatc-b7fw66 , phatc-b7g2b2 , phatc-b7g5z5 , phatc-b7g6f1 , phatc-b7g6r8 , phatc-b7g957 , phatc-b7ga73 , phatc-b7gb22 , phatc-b7gc60 , phatc-b7gdm3 , phatc-b7gdq6 , phatc-b7ge82 , phatc-b7gee0 , phatr-b7frs5 , phatr-b7g1k3 , phatr-b7s4a4 , thaps-b8bsy4 , thaps-b8cfn8 , phatc-b7g635 , phatc-b7gaj3 , thaps-b8c079