Pangilinan J

References (14)

Title : Identification and recombinant expression of a cutinase from Papiliotrema laurentii that hydrolyzes natural and synthetic polyesters - Roman_2024_Appl.Environ.Microbiol__e0169423
Author(s) : Roman VA , Crable BR , Wagner DN , Gryganskyi A , Zelik S , Cummings L , Hung CS , Nadeau LJ , Schratz L , Haridas S , Pangilinan J , Lipzen A , Na H , Yan M , Ng V , Grigoriev IV , Barlow D , Biffinger J , Kelley-Loughnane N , Crookes-Goodson WJ , Stamps B , Varaljay VA
Ref : Applied Environmental Microbiology , :e0169423 , 2024
PubMedID: 38624219
Gene_locus related to this paper: papla-Plcut1

Title : Genome Sequence of the Chestnut Blight Fungus Cryphonectria parasitica EP155: A Fundamental Resource for an Archetypical Invasive Plant Pathogen - Crouch_2020_Phytopathology_110_1180
Author(s) : Crouch JA , Dawe A , Aerts A , Barry K , Churchill ACL , Grimwood J , Hillman BI , Milgroom MG , Pangilinan J , Smith M , Salamov A , Schmutz J , Yadav JS , Grigoriev IV , Nuss DL
Ref : Phytopathology , 110 :1180 , 2020
PubMedID: 32207662
Gene_locus related to this paper: crypa-a0a9p5chw8

Title : Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass - Miyauchi_2018_Biotechnol.Biofuels_11_201
Author(s) : Miyauchi S , Rancon A , Drula E , Hage H , Chaduli D , Favel A , Grisel S , Henrissat B , Herpoel-Gimbert I , Ruiz-Duenas FJ , Chevret D , Hainaut M , Lin J , Wang M , Pangilinan J , Lipzen A , Lesage-Meessen L , Navarro D , Riley R , Grigoriev IV , Zhou S , Raouche S , Rosso MN
Ref : Biotechnol Biofuels , 11 :201 , 2018
PubMedID: 30061923
Gene_locus related to this paper: 9aphy-a0a371d1b5 , 9aphy-a0a371dju9

Title : Genomic and Genetic Insights Into a Cosmopolitan Fungus, Paecilomyces variotii (Eurotiales) - Urquhart_2018_Front.Microbiol_9_3058
Author(s) : Urquhart AS , Mondo SJ , Makela MR , Hane JK , Wiebenga A , He G , Mihaltcheva S , Pangilinan J , Lipzen A , Barry K , de Vries RP , Grigoriev IV , Idnurm A
Ref : Front Microbiol , 9 :3058 , 2018
PubMedID: 30619145
Gene_locus related to this paper: byssp-a0a443i770 , byssp-a0a443i5x3 , byssp-vdta1

Title : Coniella lustricola, a new species from submerged detritus - Raudabaugh_2018_Mycol.Prog_17_191
Author(s) : Raudabaugh DB , Iturriaga T , Carver A , Mondo S , Pangilinan J , Lipzen A , He G , Amirebrahimi M , Grigoriev IV , Miller AN
Ref : Mycol Prog , 17 :191 , 2018
PubMedID:
Gene_locus related to this paper: 9pezi-a0a2t3a098 , 9pezi-a0a2t2zy46 , 9pezi-a0a2t3akb4 , 9pezi-a0a2t3a2p2

Title : Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities - Nagy_2016_Mol.Biol.Evol_33_959
Author(s) : Nagy LG , Riley R , Tritt A , Adam C , Daum C , Floudas D , Sun H , Yadav JS , Pangilinan J , Larsson KH , Matsuura K , Barry K , LaButti K , Kuo R , Ohm RA , Bhattacharya SS , Shirouzu T , Yoshinaga Y , Martin FM , Grigoriev IV , Hibbett DS
Ref : Molecular Biology Evolution , 33 :959 , 2016
PubMedID: 26659563
Gene_locus related to this paper: 9homo-a0a164swv2 , 9homo-a0a164tl22 , 9homo-a0a164vkv1 , 9homo-a0a164y4j9 , 9homo-a0a164y4l9 , 9homo-a0a164ytj2 , 9homo-a0a164zeu0 , exigl-a0a165as65 , exigl-a0a165ck85 , 9basi-a0a165cm83 , 9aphy-a0a165dbf1 , 9aphy-a0a165dbf3 , 9basi-a0a165dcb7 , 9aphy-a0a165ddj9 , exigl-a0a165dj22 , exigl-a0a165dmd7 , 9aphy-a0a165egr5 , 9basi-a0a165ekd3 , 9basi-a0a165enc9 , 9basi-a0a165end6 , 9basi-a0a165epz3 , 9basi-a0a165eq46 , 9basi-a0a165eq95 , 9basi-a0a165eqk7 , 9basi-a0a165eup2 , 9aphy-a0a165fb02 , 9aphy-a0a165fmr9 , 9aphy-a0a165g3p1 , 9basi-a0a165g673 , 9basi-a0a165g6g2 , 9aphy-a0a165gec2 , 9basi-a0a165gfp7 , 9aphy-a0a165h505 , 9aphy-a0a165hd72 , 9aphy-a0a165hrk1 , exigl-a0a165hzc8 , 9basi-a0a165i2y7 , 9basi-a0a165iru3 , 9basi-a0a165is19 , 9basi-a0a165is40 , exigl-a0a165j2r4 , exigl-a0a165j754 , 9basi-a0a165jg92 , 9basi-a0a165jgb0 , exigl-a0a165ke04 , exigl-a0a165kpb0 , exigl-a0a165l7g6 , 9aphy-a0a165lux8 , 9aphy-a0a165luy2.1 , 9aphy-a0a165luy2.2 , exigl-a0a165m310 , 9aphy-a0a165mxa5 , 9aphy-a0a165mxc8 , 9aphy-a0a165mxe4 , exigl-a0a165mz73 , 9homo-a0a165nfz4 , 9homo-a0a165ng04 , 9aphy-a0a165nry3 , 9homo-a0a165ntf3 , 9homo-a0a165p2a0 , 9aphy-a0a165ph74 , 9homo-a0a165phz5 , exigl-a0a165pm12 , exigl-a0a165pu90 , exigl-a0a165puh2 , 9aphy-a0a165q9t4 , 9homo-a0a165qeb7 , 9homo-a0a165qeh8 , 9aphy-a0a165qqm2 , 9aphy-a0a165quj0 , 9aphy-a0a165qul3 , exigl-a0a165qxy0 , 9aphy-a0a165r6t2 , 9aphy-a0a165r8g4 , 9aphy-a0a165tfc7 , 9homo-a0a165tgm2 , 9homo-a0a165tzv4 , 9homo-a0a165tzw4 , 9homo-a0a165uez3 , 9homo-a0a165ugh4 , 9homo-a0a165ugp4 , 9homo-a0a165ugq6 , 9homo-a0a165uh51 , 9aphy-a0a165umj9 , 9homo-a0a165us14 , 9homo-a0a165xi11 , 9homo-a0a165xmw5 , 9homo-a0a165xmx9 , 9homo-a0a165xsk7 , 9homo-a0a165y3k8 , 9homo-a0a165yhg3 , 9homo-a0a165ymb3 , 9homo-a0a165yt77 , 9homo-a0a165ytu4 , 9homo-a0a165zr30 , 9homo-a0a166a1g9 , 9homo-a0a166a1h1 , exigl-a0a166abe4 , 9homo-a0a166akq6 , exigl-a0a166al33 , 9homo-a0a166arm1 , 9homo-a0a166as45 , 9homo-a0a166as65 , 9homo-a0a166as77 , exigl-a0a166auh4 , 9homo-a0a166azk8 , exigl-a0a166azz6 , 9homo-a0a166bss2 , 9homo-a0a166bsu9 , 9homo-a0a166bui6 , 9homo-a0a166crl5 , 9homo-a0a166d8q4 , 9homo-a0a166dss7 , 9homo-a0a166dtg8 , 9homo-a0a166du49 , 9homo-a0a166du64 , 9homo-a0a166e1z2 , 9homo-a0a166eec5 , 9homo-a0a166eux5 , 9homo-a0a166evw5 , 9homo-a0a166ey75 , 9homo-a0a166eyq0 , 9homo-a0a166ez78 , 9homo-a0a166eze7 , 9homo-a0a166fh25 , 9homo-a0a166g4k8 , 9homo-a0a166gct1 , 9homo-a0a166gf56 , 9homo-a0a166gsr8 , 9homo-a0a166j6i1 , 9homo-a0a166jiu0 , 9homo-a0a166jr36 , 9homo-a0a166kia8 , 9homo-a0a166ks21 , 9homo-a0a166kvn8 , 9homo-a0a166kxf0 , 9homo-a0a166kxg2 , 9homo-a0a166lcs7 , 9homo-a0a166lw48 , 9homo-a0a166lyz4 , 9homo-a0a166puu7.1 , 9homo-a0a166puu7.2 , 9homo-a0a166puz0 , 9homo-a0a166pv75 , 9homo-a0a166pva0 , 9homo-a0a166pvf7 , 9homo-a0a166px11 , 9homo-a0a166q635 , 9basi-a0a167gl88 , 9basi-a0a167gl97 , 9basi-a0a167gla5 , 9basi-a0a167hca0 , 9basi-a0a167hrt3 , 9basi-a0a167hru7 , 9basi-a0a167k219 , 9basi-a0a167k232 , 9basi-a0a167k265 , 9basi-a0a167l6m6 , 9basi-a0a167lrl7 , 9basi-a0a167lt70 , 9basi-a0a167mtk7 , 9basi-a0a167n1z0 , 9basi-a0a167p9x5 , 9basi-a0a167qks1 , 9basi-a0a167qkt4 , 9basi-a0a167qky5 , 9basi-a0a167qln8 , 9basi-a0a167rpp7 , 9homo-a0a167u8e3 , 9homo-a0a167v1m8 , 9homo-a0a166hqx0 , 9homo-a0a166l842 , exigl-a0a165n4f2 , exigl-a0a165q512 , 9agam-a0a165nq75 , 9agam-a0a166cv75 , 9agam-a0a165mvt4 , 9agam-a0a164t8q2 , 9agam-a0a166flp0

Title : The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation - Blanc_2012_Genome.Biol_13_R39
Author(s) : Blanc G , Agarkova I , Grimwood J , Kuo A , Brueggeman A , Dunigan DD , Gurnon J , Ladunga I , Lindquist E , Lucas S , Pangilinan J , Proschold T , Salamov A , Schmutz J , Weeks D , Yamada T , Lomsadze A , Borodovsky M , Claverie JM , Grigoriev IV , Van Etten JL
Ref : Genome Biol , 13 :R39 , 2012
PubMedID: 22630137
Gene_locus related to this paper: 9chlo-i0z4k0 , 9chlo-i0ylt0 , cocsc-i0ytb9 , cocsc-i0yin5

Title : Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88 - Andersen_2011_Genome.Res_21_885
Author(s) : Andersen MR , Salazar MP , Schaap PJ , van de Vondervoort PJ , Culley D , Thykaer J , Frisvad JC , Nielsen KF , Albang R , Albermann K , Berka RM , Braus GH , Braus-Stromeyer SA , Corrochano LM , Dai Z , van Dijck PW , Hofmann G , Lasure LL , Magnuson JK , Menke H , Meijer M , Meijer SL , Nielsen JB , Nielsen ML , van Ooyen AJ , Pel HJ , Poulsen L , Samson RA , Stam H , Tsang A , van den Brink JM , Atkins A , Aerts A , Shapiro H , Pangilinan J , Salamov A , Lou Y , Lindquist E , Lucas S , Grimwood J , Grigoriev IV , Kubicek CP , Martinez D , van Peij NN , Roubos JA , Nielsen J , Baker SE
Ref : Genome Res , 21 :885 , 2011
PubMedID: 21543515
Gene_locus related to this paper: aspna-g3y4g9 , aspna-g3yal2 , aspna-g3ycq2 , aspnc-a2qbh3 , aspnc-a2qe77 , aspnc-a2qf54 , aspnc-a2qfe9 , aspnc-a2qg33 , aspnc-a2qh76 , aspnc-a2qhe2 , aspnc-a2qi32 , aspnc-a2ql89 , aspnc-a2ql90 , aspnc-a2qla0 , aspnc-a2qmk5 , aspnc-a2qn56 , aspnc-a2qs22 , aspnc-a2qti9 , aspnc-a2qtz0 , aspnc-a2quc1 , aspnc-a2qx92 , aspnc-a2qyf0 , aspnc-a2qys7 , aspnc-a2qz72 , aspnc-a2qzn6 , aspnc-a2qzr0 , aspnc-a2qzx0 , aspnc-a2qzx4 , aspnc-a2r0p4 , aspnc-a2r1r5 , aspnc-a2r2i5 , aspnc-a2r5r4 , aspnc-a2r6h5 , aspnc-a2r8r3 , aspnc-a2r8z3 , aspnc-a2r273 , aspnc-a2r496 , aspnc-a2r502 , aspnc-a5abe5 , aspnc-a5abe8 , aspnc-a5abh9 , aspnc-a5abk1 , aspnc-axe1 , aspnc-cuti1 , aspnc-cuti2 , aspng-a2qs46 , aspng-a2qv27 , aspni-EstA , aspkw-g7y0v7 , aspnc-a2qt47 , aspnc-a2qt66 , aspna-g3xpq9 , aspnc-a2qqa1 , aspna-g3xsl3 , aspna-g3y5a6 , aspna-g3xpw9 , aspaw-a0a401kpx5 , aspnc-a2qw57 , aspaw-a0a401kcz4 , aspna-alba , aspna-azac

Title : The ecoresponsive genome of Daphnia pulex - Colbourne_2011_Science_331_555
Author(s) : Colbourne JK , Pfrender ME , Gilbert D , Thomas WK , Tucker A , Oakley TH , Tokishita S , Aerts A , Arnold GJ , Basu MK , Bauer DJ , Caceres CE , Carmel L , Casola C , Choi JH , Detter JC , Dong Q , Dusheyko S , Eads BD , Frohlich T , Geiler-Samerotte KA , Gerlach D , Hatcher P , Jogdeo S , Krijgsveld J , Kriventseva EV , Kultz D , Laforsch C , Lindquist E , Lopez J , Manak JR , Muller J , Pangilinan J , Patwardhan RP , Pitluck S , Pritham EJ , Rechtsteiner A , Rho M , Rogozin IB , Sakarya O , Salamov A , Schaack S , Shapiro H , Shiga Y , Skalitzky C , Smith Z , Souvorov A , Sung W , Tang Z , Tsuchiya D , Tu H , Vos H , Wang M , Wolf YI , Yamagata H , Yamada T , Ye Y , Shaw JR , Andrews J , Crease TJ , Tang H , Lucas SM , Robertson HM , Bork P , Koonin EV , Zdobnov EM , Grigoriev IV , Lynch M , Boore JL
Ref : Science , 331 :555 , 2011
PubMedID: 21292972
Gene_locus related to this paper: dappu-e9fut0 , dappu-e9fut9 , dappu-e9fvw6 , dappu-e9fxt4 , dappu-e9fyr6 , dappu-e9fzg6 , dappu-e9g1e2 , dappu-e9g1e6 , dappu-e9g1e7 , dappu-e9g1e8 , dappu-e9g1v3 , dappu-e9g1z2 , dappu-e9gb99 , dappu-e9gba0 , dappu-e9gcb4 , dappu-e9gdv5 , dappu-e9gdv7 , dappu-e9gi24 , dappu-e9gj77 , dappu-e9gja7 , dappu-e9gmp5 , dappu-e9gmr0 , dappu-e9gn32 , dappu-e9gp76 , dappu-e9gp82 , dappu-e9gp98 , dappu-e9gp99 , dappu-e9gvl2 , dappu-e9gzn7 , dappu-e9h1p4 , dappu-e9h2c8 , dappu-e9h2c9 , dappu-e9h6x9 , dappu-e9h6y4 , dappu-e9h7w9 , dappu-e9h8r4 , dappu-e9hd06 , dappu-e9hh56 , dappu-e9hh57 , dappu-e9hh59 , dappu-e9hmp4 , dappu-e9hp64 , dappu-e9hp65 , dappu-e9hpy8 , dappu-e9htg8 , dapul-ACHE1 , dapul-ACHE2 , dappu-e9gnj1 , dappu-e9gu36 , dappu-e9hpc4 , dappu-e9gb07 , dappu-e9glp6 , dappu-e9glp5 , dappu-e9gjv2 , dappu-e9h0c7 , dappu-e9g4g2 , dappu-e9gw69 , dappu-e9h3h9 , dappu-e9g545 , dappu-e9gw71 , dappu-e9gw68 , dappu-e9h3e7 , dappu-e9gfg9 , dappu-e9fvy6 , dappu-e9hgt2

Title : The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex - Blanc_2010_Plant.Cell_22_2943
Author(s) : Blanc G , Duncan G , Agarkova I , Borodovsky M , Gurnon J , Kuo A , Lindquist E , Lucas S , Pangilinan J , Polle J , Salamov A , Terry A , Yamada T , Dunigan DD , Grigoriev IV , Claverie JM , Van Etten JL
Ref : Plant Cell , 22 :2943 , 2010
PubMedID: 20852019
Gene_locus related to this paper: chlva-e1z3j3 , chlva-e1z3n9 , chlva-e1z620 , chlva-e1z882 , chlva-e1zd56 , chlva-e1zdd9 , chlva-e1zde0 , chlva-e1ze02 , chlva-e1zeh7 , chlva-e1zhu4 , chlva-e1zie3 , chlva-e1zii9 , chlva-e1zmj6 , chlva-e1ztt0 , chlva-e1z5k1 , chlva-e1ztf4

Title : Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas - Worden_2009_Science_324_268
Author(s) : Worden AZ , Lee JH , Mock T , Rouze P , Simmons MP , Aerts AL , Allen AE , Cuvelier ML , Derelle E , Everett MV , Foulon E , Grimwood J , Gundlach H , Henrissat B , Napoli C , McDonald SM , Parker MS , Rombauts S , Salamov A , von Dassow P , Badger JH , Coutinho PM , Demir E , Dubchak I , Gentemann C , Eikrem W , Gready JE , John U , Lanier W , Lindquist EA , Lucas S , Mayer KF , Moreau H , Not F , Otillar R , Panaud O , Pangilinan J , Paulsen I , Piegu B , Poliakov A , Robbens S , Schmutz J , Toulza E , Wyss T , Zelensky A , Zhou K , Armbrust EV , Bhattacharya D , Goodenough UW , Van de Peer Y , Grigoriev IV
Ref : Science , 324 :268 , 2009
PubMedID: 19359590
Gene_locus related to this paper: 9chlo-c1e363 , 9chlo-c1ehp8 , 9chlo-c1fhv2 , 9chlo-c1mis3 , 9chlo-c1na62 , micpc-c1mh04 , micpc-c1mhj0 , micpc-c1mie7 , micpc-c1mj20 , micpc-c1mjh0 , micpc-c1mny7 , micpc-c1mpb2 , micpc-c1mrl2 , micpc-c1msr1 , micpc-c1mvk4 , micpc-c1mvx4 , micpc-c1n5d2 , micpc-c1n6i2 , micpc-c1n842 , micsr-c1dzu1 , micsr-c1e0v8 , micsr-c1e2u5 , micsr-c1e4q6 , micsr-c1e6z5 , micsr-c1e046 , micsr-c1e286 , micsr-c1eap0 , micsr-c1ec00 , micsr-c1edy4 , micsr-c1efl2 , micsr-c1eh15 , micsr-c1ei44 , micsr-c1eii9 , micsr-c1eiz1 , micsr-c1fft1 , micsr-c1fi89 , micsr-c1fj57 , micsr-c1e9f6 , micsr-c1e9u2 , micsr-c1fgg8 , micpc-c1mie3 , micpc-c1ms20 , micpc-c1n640 , miccc-c1e278 , micpc-c1mpa6

Title : The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion - Coleman_2009_PLoS.Genet_5_e1000618
Author(s) : Coleman JJ , Rounsley SD , Rodriguez-Carres M , Kuo A , Wasmann CC , Grimwood J , Schmutz J , Taga M , White GJ , Zhou S , Schwartz DC , Freitag M , Ma LJ , Danchin EG , Henrissat B , Coutinho PM , Nelson DR , Straney D , Napoli CA , Barker BM , Gribskov M , Rep M , Kroken S , Molnar I , Rensing C , Kennell JC , Zamora J , Farman ML , Selker EU , Salamov A , Shapiro H , Pangilinan J , Lindquist E , Lamers C , Grigoriev IV , Geiser DM , Covert SF , Temporini E , Vanetten HD
Ref : PLoS Genet , 5 :e1000618 , 2009
PubMedID: 19714214
Gene_locus related to this paper: fusso-cutas , nech7-c7yh18 , nech7-c7yir8 , nech7-c7yiz6 , nech7-c7yjl4 , nech7-c7yjp7 , nech7-c7yjq0 , nech7-c7ymg9 , nech7-c7ymv6 , nech7-c7yna5 , nech7-c7ynt6 , nech7-c7yq59 , nech7-c7yq86 , nech7-c7yqb0 , nech7-c7yqx3 , nech7-c7ysz7 , nech7-c7ysz8 , nech7-c7ytb2 , nech7-c7yum7 , nech7-c7yvb1 , nech7-c7yvb8 , nech7-c7yvf1 , nech7-c7yvq8 , nech7-c7yw21 , nech7-c7yx47 , nech7-c7yx92 , nech7-c7yxe7 , nech7-c7yxq5 , nech7-c7yxz4 , nech7-c7yy47 , nech7-c7yyj7 , nech7-c7yym7 , nech7-c7z0d7 , nech7-c7z0s1 , nech7-c7z1g9 , nech7-c7z1k9 , nech7-c7z2k4 , nech7-c7z2m9 , nech7-c7z2z2 , nech7-c7z3z3 , nech7-c7z4a4 , nech7-c7z5n1 , nech7-c7z5y2 , nech7-c7z6g5 , nech7-c7z7d0 , nech7-c7z7w8 , nech7-c7z8q7 , nech7-c7z9e7 , nech7-c7z073 , nech7-c7z354 , nech7-c7z389 , nech7-c7z688 , nech7-c7z855 , nech7-c7z987 , nech7-c7za94 , nech7-c7zah0 , nech7-c7zb79 , nech7-c7zbr8 , nech7-c7zcd1 , nech7-c7zdx8 , nech7-c7ze42 , nech7-c7ze84 , nech7-c7zed8 , nech7-c7zeh0 , nech7-c7zes2 , nech7-c7zgw2 , nech7-c7zha0 , nech7-c7zhy2 , nech7-c7zi55 , nech7-c7zig4 , nech7-c7zjg0 , nech7-c7zjv2 , nech7-c7zk96 , nech7-c7zkb5 , nech7-c7zkh4 , nech7-c7zla9 , nech7-c7zld2 , nech7-c7zlz1 , nech7-c7zm00 , nech7-c7zmn4 , nech7-c7zmu6 , nech7-c7zp06 , nech7-c7zp78 , nech7-c7zq58 , nech7-c7zq86 , nech7-c7zqb5 , nech7-c7zqk4 , nech7-c7zqp9 , nech7-c7zr59 , nech7-c7zrh2 , nech7-c7zrh3 , nech7-dapb , nech7-kex1 , nech7-c7zgl9 , nech7-c7z935 , nech7-c7znc0 , nech7-c7yiq8 , nech7-c7yiq7 , nech7-c7zhu0 , nech7-c7yw61 , nech7-c7yqd3 , nech7-c7zkb6 , nech7-c7z3b4 , nech7-c7ytr4 , nech7-c7zgf7 , 9hypo-a0a3m2s2j6 , nech7-c7yq54 , fusv7-cbpya