Gene_Locus Report

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Gene_locus Report for: colp3-q488d2

Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) hypothetical protein

Relationship
Family|Prolyl_oligopeptidase_S9
Block| X
Position in NCBI Life Tree|Colwellia psychrerythraea
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Alteromonadales: N E > Colwelliaceae: N E > Colwellia: N E > Colwellia psychrerythraea: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : CP000083
1 UniProt : Q488D2
1 UniProt : Q488D2
1 Interpro : Q488D2
1 Pfam : Q488D2
1 PIRSF : Q488D2
1 SUPERFAM : Q488D2
Sequence
Graphical view for this peptide sequence: colp3-q488d2
Colored MSA for Prolyl_oligopeptidase_S9 (raw)
MYKFLIKAIFLGLIFISATGYAKNWDGIFERAQYQNAKISPDGKHIAVSV
FSKGEASLVFVDSNTLKAVSGSKLPSRLEIGQYYWVNNERVVISLSKRDP
WLEEPVSYGELFAINMDGSRGKMIYGYRSGEKQTGSNIKKKESTFGWGKI
VDILPEDKKHILISSTPMSTSGERFATVLKLNVYTGVIKRKVVKSPVPFA
RFLTDGQGKVKFVAGRDGNNDTKLYFREDGKWKHIPQDIVGSRVQPLFID
ASGKSLYTIDDYQQDIKGIFKLNLENFQYKSVYTDKEVNITDVEMTTDKR
SAYAVRVDDGYPAYLILNKKHEEAKVFKELLKLFPYSSVNVTSKTEDGQR
YVVFVSSDIDPGSLYLLDRKSNQLKRLFQFKPEFQSADFAQVEPIKFEAS
DGSMLNGFFTQAKAKQKNELAPTVVLVHGGPHGVRDYWEFSTQVQYLVSR
GYSVLQVNYRGSGGFGANYEKLGYRAWGSRVQQDILDGYQWLVKNKKAAD
NKVCIMGGSFGAYSAIQSATLYPDVYKCAIANAGIYDLELMFEEGDIQQR
RSGMSYLKRVLGTDEQLLKSMSPVNYVEKIQIPILLAHGEKDKRAPFEHA
ERLRAALDKENKSYEWFVIGDESHGFFNPENQRAYMKQVVGFLDKHLL
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MYKFLIKAIFLGLIFISATGYAKNWDGIFERAQYQNAKISPDGKHIAVSV
FSKGEASLVFVDSNTLKAVSGSKLPSRLEIGQYYWVNNERVVISLSKRDP
WLEEPVSYGELFAINMDGSRGKMIYGYRSGEKQTGSNIKKKESTFGWGKI
VDILPEDKKHILISSTPMSTSGERFATVLKLNVYTGVIKRKVVKSPVPFA
RFLTDGQGKVKFVAGRDGNNDTKLYFREDGKWKHIPQDIVGSRVQPLFID
ASGKSLYTIDDYQQDIKGIFKLNLENFQYKSVYTDKEVNITDVEMTTDKR
SAYAVRVDDGYPAYLILNKKHEEAKVFKELLKLFPYSSVNVTSKTEDGQR
YVVFVSSDIDPGSLYLLDRKSNQLKRLFQFKPEFQSADFAQVEPIKFEAS
DGSMLNGFFTQAKAKQKNELAPTVVLVHGGPHGVRDYWEFSTQVQYLVSR
GYSVLQVNYRGSGGFGANYEKLGYRAWGSRVQQDILDGYQWLVKNKKAAD
NKVCIMGGSFGAYSAIQSATLYPDVYKCAIANAGIYDLELMFEEGDIQQR
RSGMSYLKRVLGTDEQLLKSMSPVNYVEKIQIPILLAHGEKDKRAPFEHA
ERLRAALDKENKSYEWFVIGDESHGFFNPENQRAYMKQVVGFLDKHLL


Reference
    Title: The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses
    Methe BA, Nelson KE, Deming JW, Momen B, Melamud E, Zhang X, Moult J, Madupu R, Nelson WC and Fraser CM <17 more author(s)>
    Ref: Proc Natl Acad Sci U S A, 102:10913, 2005 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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