Gene_Locus Report

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Gene_locus Report for: colp3-q48ac9

Colwellia psychrerythraea (strain 34H / ATCC BAA-681) (Vibrio psychroerythus) bioh protein

Relationship
Family|BioH
Block| X
Position in NCBI Life Tree|Colwellia psychrerythraea
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Alteromonadales: N E > Colwelliaceae: N E > Colwellia: N E > Colwellia psychrerythraea: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : CP000083
1 UniProt : Q48AC9
1 UniProt : Q48AC9
1 Interpro : Q48AC9
1 Pfam : Q48AC9
1 PIRSF : Q48AC9
1 SUPERFAM : Q48AC9
Sequence
Graphical view for this peptide sequence: colp3-q48ac9
Colored MSA for BioH (raw)
MAKSLTFSTFSPNNTLKKNVIPIVLLHGWGLNSGVWQPLLELFHRNDESI
YQLITIDLPGFGINSAVDIKPYSLANICHHIEQVIDQPAIYLGWSLGGLI
ATEMSLKYPEKVLASITVASSPYFVEQPTDNWPGIKENVLESFHKQLAQD
TAKTISGFLKIQAMGSPHIRQDLKLITQLVMAHTLPSQQTLADSLALLSN
SDLRLHLSKIKQPLLRLYGHNDSLVPKEVMEKISYLAPNSDQHLFADASH
APFISHLDDFYQVLVVWLDSHFN
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MAKSLTFSTFSPNNTLKKNVIPIVLLHGWGLNSGVWQPLLELFHRNDESI
YQLITIDLPGFGINSAVDIKPYSLANICHHIEQVIDQPAIYLGWSLGGLI
ATEMSLKYPEKVLASITVASSPYFVEQPTDNWPGIKENVLESFHKQLAQD
TAKTISGFLKIQAMGSPHIRQDLKLITQLVMAHTLPSQQTLADSLALLSN
SDLRLHLSKIKQPLLRLYGHNDSLVPKEVMEKISYLAPNSDQHLFADASH
APFISHLDDFYQVLVVWLDSHFN


Reference
    Title: The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses
    Methe BA, Nelson KE, Deming JW, Momen B, Melamud E, Zhang X, Moult J, Madupu R, Nelson WC and Fraser CM <17 more author(s)>
    Ref: Proc Natl Acad Sci U S A, 102:10913, 2005 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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