Gene_Locus Report

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Gene_locus Report for: cupnh-q0k320

Ralstonia eutropha (Cupriavidus necator) (strain ATCC 17699 / H16 / DSM 428 / Stanier 337), Cupriavidus sp., Ralstonia sp hydrolase

Comment
Other strains: Ralstonia eutropha Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337), Cupriavidus sp. SK-4, Ralstonia sp. GA3-3


Relationship
Family|NFM-deformylase
Block| X
Position in NCBI Life Tree|Ralstonia eutropha
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Betaproteobacteria: N E > Burkholderiales: N E > Burkholderiaceae: N E > Cupriavidus: N E > Cupriavidus necator: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
3 Genbank : AM260480, JFJW01000064, AQPZ01000046
3 UniProt : Q0K320, A0A022GCM4, R7XD73
3 UniProt : Q0K320, A0A022GCM4, R7XD73
3 Interpro : Q0K320, A0A022GCM4, R7XD73
3 Pfam : Q0K320, A0A022GCM4, R7XD73
3 PIRSF : Q0K320, A0A022GCM4, R7XD73
3 SUPERFAM : Q0K320, A0A022GCM4, R7XD73
Sequence
Graphical view for this peptide sequence: cupnh-q0k320
Colored MSA for NFM-deformylase (raw)
MTTFLYGGHVHANGIRQHFLRYGGNDGERAARDPVIIVPGITSPAITWGF
VGERFGASFDTYVLDVRGRGLSSAEAGMDYSLDAQARDVVAFAEALGLRR
HSVVGHSMGARIGVRAAAGRPGGLARLVLVDPPVSGPGRRAYPAQLPWYV
DSIRLSRQCTDVEGMRRFCPTWTDEQLRLRAEWLHTCNEDAVVRSFEDFH
RDDIHADLPRVKVPTLLMTAGRGDVVRAEDVAEIRTLLPGVLVSHVAGAG
HMIPWDDEAGFYAAFGDFLGAPLTQ
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MTTFLYGGHVHANGIRQHFLRYGGNDGERAARDPVIIVPGITSPAITWGF
VGERFGASFDTYVLDVRGRGLSSAEAGMDYSLDAQARDVVAFAEALGLRR
HSVVGHSMGARIGVRAAAGRPGGLARLVLVDPPVSGPGRRAYPAQLPWYV
DSIRLSRQCTDVEGMRRFCPTWTDEQLRLRAEWLHTCNEDAVVRSFEDFH
RDDIHADLPRVKVPTLLMTAGRGDVVRAEDVAEIRTLLPGVLVSHVAGAG
HMIPWDDEAGFYAAFGDFLGAPLTQ


References
    Title: Draft Genome Sequence of Ralstonia sp. Strain GA3-3, Isolated from Australian Suburban Soil
    Pearce SL, Pushiri H, Oakeshott JG, Russell RJ, Pandey G
    Ref: Genome Announc, 1:, 2013 : PubMed

            

    Title: Genome sequence of the bioplastic-producing Knallgas bacterium Ralstonia eutropha H16
    Pohlmann A, Fricke WF, Reinecke F, Kusian B, Liesegang H, Cramm R, Eitinger T, Ewering C, Potter M and Bowien B <6 more author(s)>
    Ref: Nat Biotechnol, 24:1257, 2006 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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