Gene_Locus Report

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Gene_locus Report for: ralpi-u3qr80

Ralstonia pickettii; Cupriavidus necator (Ralstonia eutropha); Ralstonia sp. carboxylesterase type b (EC 3.1.1.-)

Comment
Other strains: Ralstonia pickettii DTP0602; Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (Ralstonia eutropha)Ralstonia sp. GA3-3 . Only Ralstonia pickettii seems complete


Relationship
Family|Carb_B_Bacteria
Block| C
Position in NCBI Life Tree|Ralstonia pickettii DTP0602
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Betaproteobacteria: N E > Burkholderiales: N E > Burkholderiaceae: N E > Ralstonia: N E > Ralstonia pickettii: N E > Ralstonia pickettii DTP0602: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
3 Genbank : CP006668, AM260479, AQPZ01000020
2 UniProt : Q0KE06, R7XKC2
2 UniProt : Q0KE06, R7XKC2
2 Interpro : Q0KE06, R7XKC2
2 Pfam : Q0KE06, R7XKC2
2 PIRSF : Q0KE06, R7XKC2
2 SUPERFAM : Q0KE06, R7XKC2
Sequence
Graphical view for this peptide sequence: ralpi-u3qr80
Colored MSA for Carb_B_Bacteria (raw)
MTIHYPSANLSGEPAMYPIVETRLGKVRGLRCDGVYAFKGIPYAALPFGM
NRLRLPQSAAPWRGVRDALSFGPKSPQIAYPPGIAKALGELVGGGEDCLT
LNIWAPEPGAPGRPVLVWIPGGMFEFHATGATSIYDGRRFARDGVVCVTI
NYRVGAEGFLYLGDGLANLGLLDQIAALEWVQQNIDAFGGDPGQVTIFGQ
SAGGMSVATLLTVPRAQGLFRRAIVESGNTPHVTSAATAKRIGHRLAALL
KVDPTREAIASTTPEQVLQAQAQLREELTADPDPAFWGEVALSNLPWAPT
VDGAILPAPPIDAIRAGAAANTALLVGSNTEETRLFLVPSGAIDRITEAS
LLALVAAYGLSAEGLSGYRAAHPTATAGDLFSEIQTDWYWRIPTVRLADA
HAANARVSTYMYEFAWRSPQLGGRLGAAHGVEIPFIFDNLGPGAEALVGP
TPPQSLADAMHRAWVAFAVNGDCGWPIYDPVHRSTMRFDTPSAVVEDPLA
VRLALWHGAP
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MTIHYPSANLSGEPAMYPIVETRLGKVRGLRCDGVYAFKGIPYAALPFGM
NRLRLPQSAAPWRGVRDALSFGPKSPQIAYPPGIAKALGELVGGGEDCLT
LNIWAPEPGAPGRPVLVWIPGGMFEFHATGATSIYDGRRFARDGVVCVTI
NYRVGAEGFLYLGDGLANLGLLDQIAALEWVQQNIDAFGGDPGQVTIFGQ
SAGGMSVATLLTVPRAQGLFRRAIVESGNTPHVTSAATAKRIGHRLAALL
KVDPTREAIASTTPEQVLQAQAQLREELTADPDPAFWGEVALSNLPWAPT
VDGAILPAPPIDAIRAGAAANTALLVGSNTEETRLFLVPSGAIDRITEAS
LLALVAAYGLSAEGLSGYRAAHPTATAGDLFSEIQTDWYWRIPTVRLADA
HAANARVSTYMYEFAWRSPQLGGRLGAAHGVEIPFIFDNLGPGAEALVGP
TPPQSLADAMHRAWVAFAVNGDCGWPIYDPVHRSTMRFDTPSAVVEDPLA
VRLALWHGAP


References
    Title: Draft Genome Sequence of Ralstonia sp. Strain GA3-3, Isolated from Australian Suburban Soil
    Pearce SL, Pushiri H, Oakeshott JG, Russell RJ, Pandey G
    Ref: Genome Announc, 1:, 2013 : PubMed

            

    Title: Genome sequence of the bioplastic-producing Knallgas bacterium Ralstonia eutropha H16
    Pohlmann A, Fricke WF, Reinecke F, Kusian B, Liesegang H, Cramm R, Eitinger T, Ewering C, Potter M and Bowien B <6 more author(s)>
    Ref: Nat Biotechnol, 24:1257, 2006 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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