shiss-yqia

 
Shigella sonnei, Shigella flexneri, Shigella boydii, Shigella dysenteriae, hypothetical protein yqia

Comment
Other strains: Shigella sonnei (4822-66; 3233-85; 53G; 3226-85; Moseley), Shigella flexneri (serotype X (strain 2002017)serotype 5b (strain 8401)), Shigella boydii (serotype 4 (strain Sb227)serotype 18 (CDC 3083-94/BS512); 4444-74; 965-58; 5216-82; ATCC 9905; 3594-74), Shigella dysenteriae (serotype 1 Sd197; 1012; UTI89 / UPEC; CDC 74-1112; 1617; 225-75; 155-74);Shigella sp. D9


Relationship
Block X
Shigella sonnei position in NCBI Life Tree :
N link to NCBI taxonomic web page and E link to ESTHER gene locus found in this strain.
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Enterobacterales: N E > Enterobacteriaceae: N E > Shigella: N E > Shigella sonnei: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic



>3 Genbank links 17 more: CP001063, CP000036, CP000034
>3 UniProt links 6 more: B2U1D9, P0A900, Q3YXK9
>3 UniProtTrembl links 5 more: B2U1D9, Q3YXK9, Q31X01
>3 Interpro links 5 more: B2U1D9, Q3YXK9, Q31X01
>3 Prodom links 5 more: B2U1D9, Q3YXK9, Q31X01
>3 Pfam links 5 more: B2U1D9, Q3YXK9, Q31X01
>3 PIRSF links 5 more: B2U1D9, Q3YXK9, Q31X01
>3 SUPERFAM links 5 more: B2U1D9, Q3YXK9, Q31X01
>3 QuickSwissBlast links 5 more: B2U1D9, Q3YXK9, Q31X01
 
Sequence
Graphical view for this peptide sequence: shiss-yqia
Colored MSA for abh_upf00227 (raw)
MSTLLYLHGFNSSPRSAKASLLKNWLAEHHPDVEMIIPQLPPYPSDAAEL
LESIVLEHGGDSLGIVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLT
DYLGQNENPYTGQQYVLESRHIYDLKVMQIDPLEAPDLIWLLQQTGDEVL
DYRQAVAYYASCRQTVIEGGNHAFTGFEDYFNPIVDFLGLHHL
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MSTLLYLHGFNSSPRSAKASLLKNWLAEHHPDVEMIIPQLPPYPSDAAEL
LESIVLEHGGDSLGIVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLT
DYLGQNENPYTGQQYVLESRHIYDLKVMQIDPLEAPDLIWLLQQTGDEVL
DYRQAVAYYASCRQTVIEGGNHAFTGFEDYFNPIVDFLGLHHL

no DNA




References
    Title: Emergence of a new multidrug-resistant serotype X variant in an epidemic clone of Shigella flexneri
    Ye C, Lan R, Xia S, Zhang J, Sun Q, Zhang S, Jing H, Wang L, Li Z and Xu J <11 more author(s)>
    Ref: J Clin Microbiol, 48:419, 2010 : PubMed

            

    Title: Complete genome sequence of Shigella flexneri 5b and comparison with Shigella flexneri 2a
    Nie H, Yang F, Zhang X, Yang J, Chen L, Wang J, Xiong Z, Peng J, Sun L and Jin Q <6 more author(s)>
    Ref: BMC Genomics, 7:173, 2006 : PubMed

            

    Title: Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery
    Yang F, Yang J, Zhang X, Chen L, Jiang Y, Yan Y, Tang X, Wang J, Xiong Z and Jin Q <17 more author(s)>
    Ref: Nucleic Acids Research, 33:6445, 2005 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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