Pati_2009_Stand.Genomic.Sci_1_141

Reference

Title : Complete genome sequence of Saccharomonospora viridis type strain (P101) - Pati_2009_Stand.Genomic.Sci_1_141
Author(s) : Pati A , Sikorski J , Nolan M , Lapidus A , Copeland A , Glavina Del Rio T , Lucas S , Chen F , Tice H , Pitluck S , Cheng JF , Chertkov O , Brettin T , Han C , Detter JC , Kuske C , Bruce D , Goodwin L , Chain P , D'Haeseleer P , Chen A , Palaniappan K , Ivanova N , Mavromatis K , Mikhailova N , Rohde M , Tindall BJ , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP
Ref : Stand Genomic Sci , 1 :141 , 2009
Abstract :

Saccharomonospora viridis (Schuurmans et al. 1956) Nonomurea and Ohara 1971 is the type species of the genus Saccharomonospora which belongs to the family Pseudonocardiaceae. S. viridis is of interest because it is a Gram-negative organism classified among the usually Gram-positive actinomycetes. Members of the species are frequently found in hot compost and hay, and its spores can cause farmer's lung disease, bagassosis, and humidifier fever. Strains of the species S. viridis have been found to metabolize the xenobiotic pentachlorophenol (PCP). The strain described in this study has been isolated from peat-bog in Ireland. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the family Pseudonocardiaceae, and the 4,308,349 bp long single replicon genome with its 3906 protein-coding and 64 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

PubMedSearch : Pati_2009_Stand.Genomic.Sci_1_141
PubMedID: 21304650
Gene_locus related to this paper: sacvd-DsvA , sacvd-c7mpm7 , sacvd-c7mpv6 , sacvd-c7mqn5 , sacvd-c7mrh9 , sacvd-c7mrj7 , sacvd-c7msh1 , sacvd-c7mss4 , sacvd-c7msy5 , sacvd-c7mua8 , sacvd-c7mv20 , sacvd-c7mvm9 , sacvd-c7mx36 , sacvd-c7my02 , sacvd-c7myf1 , sacvd-c7myf2 , sacvd-c7myh3 , sacvd-c7myv3 , sacvd-c7mzb0 , sacvd-c7n0e5 , sacvd-c7mxx2 , sacvd-c7mwe5 , sacvd-c7mve8 , sacvd-c7mu02 , sacvd-c7myq6

Related information

Gene_locus sacvd-DsvA    sacvd-c7mpm7    sacvd-c7mpv6    sacvd-c7mqn5    sacvd-c7mrh9    sacvd-c7mrj7    sacvd-c7msh1    sacvd-c7mss4    sacvd-c7msy5    sacvd-c7mua8    sacvd-c7mv20    sacvd-c7mvm9    sacvd-c7mx36    sacvd-c7my02    sacvd-c7myf1    sacvd-c7myf2    sacvd-c7myh3    sacvd-c7myv3    sacvd-c7mzb0    sacvd-c7n0e5    sacvd-c7mxx2    sacvd-c7mwe5    sacvd-c7mve8    sacvd-c7mu02    sacvd-c7myq6

Citations formats

Pati A, Sikorski J, Nolan M, Lapidus A, Copeland A, Glavina Del Rio T, Lucas S, Chen F, Tice H, Pitluck S, Cheng JF, Chertkov O, Brettin T, Han C, Detter JC, Kuske C, Bruce D, Goodwin L, Chain P, D'Haeseleer P, Chen A, Palaniappan K, Ivanova N, Mavromatis K, Mikhailova N, Rohde M, Tindall BJ, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP (2009)
Complete genome sequence of Saccharomonospora viridis type strain (P101)
Stand Genomic Sci 1 :141

Pati A, Sikorski J, Nolan M, Lapidus A, Copeland A, Glavina Del Rio T, Lucas S, Chen F, Tice H, Pitluck S, Cheng JF, Chertkov O, Brettin T, Han C, Detter JC, Kuske C, Bruce D, Goodwin L, Chain P, D'Haeseleer P, Chen A, Palaniappan K, Ivanova N, Mavromatis K, Mikhailova N, Rohde M, Tindall BJ, Goker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP (2009)
Stand Genomic Sci 1 :141