| Title : Comparative functional genomics of the fission yeasts - Rhind_2011_Science_332_930 |
| Author(s) : Rhind N , Chen Z , Yassour M , Thompson DA , Haas BJ , Habib N , Wapinski I , Roy S , Lin MF , Heiman DI , Young SK , Furuya K , Guo Y , Pidoux A , Chen HM , Robbertse B , Goldberg JM , Aoki K , Bayne EH , Berlin AM , Desjardins CA , Dobbs E , Dukaj L , Fan L , Fitzgerald MG , French C , Gujja S , Hansen K , Keifenheim D , Levin JZ , Mosher RA , Muller CA , Pfiffner J , Priest M , Russ C , Smialowska A , Swoboda P , Sykes SM , Vaughn M , Vengrova S , Yoder R , Zeng Q , Allshire R , Baulcombe D , Birren BW , Brown W , Ekwall K , Kellis M , Leatherwood J , Levin H , Margalit H , Martienssen R , Nieduszynski CA , Spatafora JW , Friedman N , Dalgaard JZ , Baumann P , Niki H , Regev A , Nusbaum C |
| Ref : Science , 332 :930 , 2011 |
|
Abstract :
The fission yeast clade--comprising Schizosaccharomyces pombe, S. octosporus, S. cryophilus, and S. japonicus--occupies the basal branch of Ascomycete fungi and is an important model of eukaryote biology. A comparative annotation of these genomes identified a near extinction of transposons and the associated innovation of transposon-free centromeres. Expression analysis established that meiotic genes are subject to antisense transcription during vegetative growth, which suggests a mechanism for their tight regulation. In addition, trans-acting regulators control new genes within the context of expanded functional modules for meiosis and stress response. Differences in gene content and regulation also explain why, unlike the budding yeast of Saccharomycotina, fission yeasts cannot use ethanol as a primary carbon source. These analyses elucidate the genome structure and gene regulation of fission yeast and provide tools for investigation across the Schizosaccharomyces clade. |
| PubMedSearch : Rhind_2011_Science_332_930 |
| PubMedID: 21511999 |
| Gene_locus related to this paper: schjy-b6jxl8 , schjy-b6k0k9 , schjy-b6k7s4 , schjy-b6k575 , schcr-s9vnl9 , schoy-s9q625 , schjy-kex1 , schpo-ykv6 |
| Gene_locus | schjy-b6jxl8 schjy-b6k0k9 schjy-b6k7s4 schjy-b6k575 schcr-s9vnl9 schoy-s9q625 schjy-kex1 schpo-ykv6 |
| Gene_locus_frgt | schjy-b6jzm5 schcr-s9w405 |
Rhind N, Chen Z, Yassour M, Thompson DA, Haas BJ, Habib N, Wapinski I, Roy S, Lin MF, Heiman DI, Young SK, Furuya K, Guo Y, Pidoux A, Chen HM, Robbertse B, Goldberg JM, Aoki K, Bayne EH, Berlin AM, Desjardins CA, Dobbs E, Dukaj L, Fan L, Fitzgerald MG, French C, Gujja S, Hansen K, Keifenheim D, Levin JZ, Mosher RA, Muller CA, Pfiffner J, Priest M, Russ C, Smialowska A, Swoboda P, Sykes SM, Vaughn M, Vengrova S, Yoder R, Zeng Q, Allshire R, Baulcombe D, Birren BW, Brown W, Ekwall K, Kellis M, Leatherwood J, Levin H, Margalit H, Martienssen R, Nieduszynski CA, Spatafora JW, Friedman N, Dalgaard JZ, Baumann P, Niki H, Regev A, Nusbaum C (2011)
Comparative functional genomics of the fission yeasts
Science
332 :930
Rhind N, Chen Z, Yassour M, Thompson DA, Haas BJ, Habib N, Wapinski I, Roy S, Lin MF, Heiman DI, Young SK, Furuya K, Guo Y, Pidoux A, Chen HM, Robbertse B, Goldberg JM, Aoki K, Bayne EH, Berlin AM, Desjardins CA, Dobbs E, Dukaj L, Fan L, Fitzgerald MG, French C, Gujja S, Hansen K, Keifenheim D, Levin JZ, Mosher RA, Muller CA, Pfiffner J, Priest M, Russ C, Smialowska A, Swoboda P, Sykes SM, Vaughn M, Vengrova S, Yoder R, Zeng Q, Allshire R, Baulcombe D, Birren BW, Brown W, Ekwall K, Kellis M, Leatherwood J, Levin H, Margalit H, Martienssen R, Nieduszynski CA, Spatafora JW, Friedman N, Dalgaard JZ, Baumann P, Niki H, Regev A, Nusbaum C (2011)
Science
332 :930