Title : FsCGBP, a Cutinase G-Box Binding Protein, Regulates the Growth, Development, and Virulence of Fusarium sacchari, the Pathogen of Sugarcane Pokkah Boeng Disease - Liang_2024_J.Fungi.(Basel)_10_ |
Author(s) : Liang H , Li F , Huang Y , Yu Q , Huang Z , Zeng Q , Chen B , Meng J |
Ref : J Fungi (Basel) , 10 : , 2024 |
PubMedID: 38667917 |
Title : Depolymerization of the polyester-polyurethane by amidase GatA250 and enhancing the production of 4,4'-methylenedianiline with cutinase LCC - Xin_2024_Biotechnol.J_19_e2300723 |
Author(s) : Xin K , Lu J , Zeng Q , Zhang T , Liu J , Zhou J , Dong W , Jiang M |
Ref : Biotechnol J , 19 :e2300723 , 2024 |
PubMedID: 38622797 |
Gene_locus related to this paper: 9bact-g9by57 |
Title : Molecular, behavioral, and growth responses of juvenile yellow catfish (Tachysurus fulvidraco) exposed to carbamazepine - Chen_2024_Aquat.Toxicol_271_106929 |
Author(s) : Chen H , Gu X , Mao Z , Zeng Q , Jin M , Wang W , Martyniuk CJ |
Ref : Aquat Toxicol , 271 :106929 , 2024 |
PubMedID: 38663201 |
Title : Xanthophyll esterases in association with fibrillins control the stable storage of carotenoids in yellow flowers of rapeseed (Brassica juncea) - Li_2023_New.Phytol__ |
Author(s) : Li R , Zeng Q , Zhang X , Jing J , Ge X , Zhao L , Yi B , Tu J , Fu T , Wen J , Shen J |
Ref : New Phytol , : , 2023 |
PubMedID: 37194444 |
Title : Catalytic Features and Thermal Adaptation Mechanisms of a Deep Sea Bacterial Cutinase-Type Poly(Ethylene Terephthalate) Hydrolase - Liu_2022_Front.Bioeng.Biotechnol_10_865787 |
Author(s) : Liu Y , Liu C , Liu H , Zeng Q , Tian X , Long L , Yang J |
Ref : Front Bioeng Biotechnol , 10 :865787 , 2022 |
PubMedID: 35557867 |
Gene_locus related to this paper: 9actn-a0a1t4kk94 |
Title : Molecular and behavioral responses of zebrafish embryos\/larvae after sertraline exposure - Yang_2021_Ecotoxicol.Environ.Saf_208_111700 |
Author(s) : Yang H , Liang X , Zhao Y , Gu X , Mao Z , Zeng Q , Chen H , Martyniuk CJ |
Ref : Ecotoxicology & Environmental Safety , 208 :111700 , 2021 |
PubMedID: 33396031 |
Title : Environmentally relevant concentrations of sertraline disrupts behavior and the brain and liver transcriptome of juvenile yellow catfish (Tachysurus fulvidraco): Implications for the feeding and growth axis - Chen_2020_J.Hazard.Mater_409_124974 |
Author(s) : Chen H , Liang X , Gu X , Zeng Q , Mao Z , Martyniuk CJ |
Ref : J Hazard Mater , 409 :124974 , 2020 |
PubMedID: 33450510 |
Title : Exploring the genomic diversity of black yeasts and relatives (Chaetothyriales, Ascomycota) - Teixeira_2017_Stud.Mycol_86_1 |
Author(s) : Teixeira MM , Moreno LF , Stielow BJ , Muszewska A , Hainaut M , Gonzaga L , Abouelleil A , Patane JS , Priest M , Souza R , Young S , Ferreira KS , Zeng Q , da Cunha MM , Gladki A , Barker B , Vicente VA , de Souza EM , Almeida S , Henrissat B , Vasconcelos AT , Deng S , Voglmayr H , Moussa TA , Gorbushina A , Felipe MS , Cuomo CA , de Hoog GS |
Ref : Stud Mycol , 86 :1 , 2017 |
PubMedID: 28348446 |
Gene_locus related to this paper: exodn-h6btr2 , exodn-h6c4y3 |
Title : Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts - Ma_2016_Nat.Commun_7_10740 |
Author(s) : Ma L , Chen Z , Huang da W , Kutty G , Ishihara M , Wang H , Abouelleil A , Bishop L , Davey E , Deng R , Deng X , Fan L , Fantoni G , FitzGerald M , Gogineni E , Goldberg JM , Handley G , Hu X , Huber C , Jiao X , Jones K , Levin JZ , Liu Y , Macdonald P , Melnikov A , Raley C , Sassi M , Sherman BT , Song X , Sykes S , Tran B , Walsh L , Xia Y , Yang J , Young S , Zeng Q , Zheng X , Stephens R , Nusbaum C , Birren BW , Azadi P , Lempicki RA , Cuomo CA , Kovacs JA |
Ref : Nat Commun , 7 :10740 , 2016 |
PubMedID: 26899007 |
Gene_locus related to this paper: pnec8-a0a0w4zi95 , pnemu-m7nra0 , pnej8-l0pgn2 , pnemu-m7nsb0 |
Title : Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus - Perlin_2015_BMC.Genomics_16_461 |
Author(s) : Perlin MH , Amselem J , Fontanillas E , Toh SS , Chen Z , Goldberg J , Duplessis S , Henrissat B , Young S , Zeng Q , Aguileta G , Petit E , Badouin H , Andrews J , Razeeq D , Gabaldon T , Quesneville H , Giraud T , Hood ME , Schultz DJ , Cuomo CA |
Ref : BMC Genomics , 16 :461 , 2015 |
PubMedID: 26076695 |
Gene_locus related to this paper: ustv1-u5h5e5 |
Title : Death receptor and mitochondria-mediated hepatocyte apoptosis underlies liver dysfunction in rats exposed to organic pollutants from drinking water - Yang_2015_Drug.Des.Devel.Ther_9_4719 |
Author(s) : Yang G , Zhou Z , Cen Y , Gui X , Zeng Q , Ao Y , Li Q , Wang S , Li J , Zhang A |
Ref : Drug Des Devel Ther , 9 :4719 , 2015 |
PubMedID: 26316710 |
Title : The Dynamic Genome and Transcriptome of the Human Fungal Pathogen Blastomyces and Close Relative Emmonsia - Munoz_2015_PLoS.Genet_11_e1005493 |
Author(s) : Munoz JF , Gauthier GM , Desjardins CA , Gallo JE , Holder J , Sullivan TD , Marty AJ , Carmen JC , Chen Z , Ding L , Gujja S , Magrini V , Misas E , Mitreva M , Priest M , Saif S , Whiston EA , Young S , Zeng Q , Goldman WE , Mardis ER , Taylor JW , McEwen JG , Clay OK , Klein BS , Cuomo CA |
Ref : PLoS Genet , 11 :e1005493 , 2015 |
PubMedID: 26439490 |
Gene_locus related to this paper: ajedr-c5gqv9 , 9euro-a0a2b7ztc4 , 9euro-a0a2b7wr51 , blags-a0a179v0z0 , 9euro-a0a0h1bel0 , blags-a0a179udh1 , ajedr-kex1 , ajedr-cbpya |
Title : Genome Sequence of Fusarium oxysporum f. sp. melonis Strain NRRL 26406, a Fungus Causing Wilt Disease on Melon - Ma_2014_Genome.Announc_2_e00730 |
Author(s) : Ma LJ , Shea T , Young S , Zeng Q , Kistler HC |
Ref : Genome Announc , 2 : , 2014 |
PubMedID: 25081257 |
Gene_locus related to this paper: fusox-a0a1d3s5h0 , fusox-w9p5i8 , fusox-w9hvf0 |
Title : Genome Sequence of the Pathogenic Fungus Sporothrix schenckii (ATCC 58251) - Cuomo_2014_Genome.Announc_2_E00446 |
Author(s) : Cuomo CA , Rodriguez-Del Valle N , Perez-Sanchez L , Abouelleil A , Goldberg J , Young S , Zeng Q , Birren BW |
Ref : Genome Announc , 2 :E0044614 , 2014 |
PubMedID: 24855299 |
Gene_locus related to this paper: spos1-u7q5l6 , spos1-u7phh2 , spos1-u7pxz2 , spos1-u7q332 , spos1-u7pw92 |
Title : Efficient strategy for maintaining and enhancing the huperzine A production of Shiraia sp. Slf14 through inducer elicitation - Yan_2014_J.Ind.Microbiol.Biotechnol_41_1175 |
Author(s) : Yan R , Zhang Z , Wang Y , Yang H , Zeng Q , Zhu D |
Ref : J Ind Microbiol Biotechnol , 41 :1175 , 2014 |
PubMedID: 24865990 |
Title : Comparative genomic and transcriptomic analysis of wangiella dermatitidis, a major cause of phaeohyphomycosis and a model black yeast human pathogen - Chen_2014_G3.(Bethesda)_4_561 |
Author(s) : Chen Z , Martinez DA , Gujja S , Sykes SM , Zeng Q , Szaniszlo PJ , Wang Z , Cuomo CA |
Ref : G3 (Bethesda) , 4 :561 , 2014 |
PubMedID: 24496724 |
Gene_locus related to this paper: exodn-h6bmp3 , exodn-h6btr2 , exodn-h6c4y3 |
Title : High-Quality Draft Genome Sequence of Vagococcus lutrae Strain LBD1, Isolated from the Largemouth Bass Micropterus salmoides - Lebreton_2013_Genome.Announc_1_e01087 |
Author(s) : Lebreton F , Valentino MD , Duncan LB , Zeng Q , Manson McGuire A , Earl AM , Gilmore MS |
Ref : Genome Announc , 1 : , 2013 |
PubMedID: 24371201 |
Gene_locus related to this paper: 9ente-v6q7i5 |
Title : Distinctive expansion of potential virulence genes in the genome of the oomycete fish pathogen Saprolegnia parasitica - Jiang_2013_PLoS.Genet_9_e1003272 |
Author(s) : Jiang RH , de Bruijn I , Haas BJ , Belmonte R , Lobach L , Christie J , Van den Ackerveken G , Bottin A , Bulone V , Diaz-Moreno SM , Dumas B , Fan L , Gaulin E , Govers F , Grenville-Briggs LJ , Horner NR , Levin JZ , Mammella M , Meijer HJ , Morris P , Nusbaum C , Oome S , Phillips AJ , van Rooyen D , Rzeszutek E , Saraiva M , Secombes CJ , Seidl MF , Snel B , Stassen JH , Sykes S , Tripathy S , van den Berg H , Vega-Arreguin JC , Wawra S , Young SK , Zeng Q , Dieguez-Uribeondo J , Russ C , Tyler BM , van West P |
Ref : PLoS Genet , 9 :e1003272 , 2013 |
PubMedID: 23785293 |
Gene_locus related to this paper: sappc-a0a067bqc9 , sappc-a0a067cbi1 |
Title : Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence - Manning_2013_G3.(Bethesda)_3_41 |
Author(s) : Manning VA , Pandelova I , Dhillon B , Wilhelm LJ , Goodwin SB , Berlin AM , Figueroa M , Freitag M , Hane JK , Henrissat B , Holman WH , Kodira CD , Martin J , Oliver RP , Robbertse B , Schackwitz W , Schwartz DC , Spatafora JW , Turgeon BG , Yandava C , Young S , Zhou S , Zeng Q , Grigoriev IV , Ma LJ , Ciuffetti LM |
Ref : G3 (Bethesda) , 3 :41 , 2013 |
PubMedID: 23316438 |
Gene_locus related to this paper: pyrtr-b2vxe8 , pyrtr-b2vvm1 , pyrtr-b2vzr5 , pyrtr-b2vu22 , pyrtr-kex1 |
Title : Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011 - Grad_2012_Proc.Natl.Acad.Sci.U.S.A_109_3065 |
Author(s) : Grad YH , Lipsitch M , Feldgarden M , Arachchi HM , Cerqueira GC , FitzGerald M , Godfrey P , Haas BJ , Murphy CI , Russ C , Sykes S , Walker BJ , Wortman JR , Young S , Zeng Q , Abouelleil A , Bochicchio J , Chauvin S , Desmet T , Gujja S , McCowan C , Montmayeur A , Steelman S , Frimodt-Moller J , Petersen AM , Struve C , Krogfelt KA , Bingen E , Weill FX , Lander ES , Nusbaum C , Birren BW , Hung DT , Hanage WP |
Ref : Proc Natl Acad Sci U S A , 109 :3065 , 2012 |
PubMedID: 22315421 |
Gene_locus related to this paper: ecoli-fes , ecoli-MCMK , ecoli-yaim , ecoli-ycfp , ecoli-YFBB , ecoli-yhet , ecoli-yiel , ecoli-yqia , ecoli-YfhR |
Title : Complete genome sequence of Algoriphagus sp. PR1, bacterial prey of a colony-forming choanoflagellate - Alegado_2011_J.Bacteriol_193_1485 |
Author(s) : Alegado RA , Ferriera S , Nusbaum C , Young SK , Zeng Q , Imamovic A , Fairclough SR , King N |
Ref : Journal of Bacteriology , 193 :1485 , 2011 |
PubMedID: 21183675 |
Gene_locus related to this paper: 9bact-a3hsc2 , 9bact-a3hsw0 , 9bact-a3ht61 , 9bact-a3hta1.1 , 9bact-a3hta1.2 , 9bact-a3htc8 , 9bact-a3htd6 , 9bact-a3hti5 , 9bact-a3htn1 , 9bact-a3htn2 , 9bact-a3htn3 , 9bact-a3htn9 , 9bact-a3htv3 , 9bact-a3hu26 , 9bact-a3hu92 , 9bact-a3hwh7 , 9bact-a3hws7 , 9bact-a3hws8 , 9bact-a3hy22 , 9bact-a3hzv9 , 9bact-a3i1k2 , 9bact-a3i1r2 , 9bact-a3i1r3 , 9bact-a3i2k7 , 9bact-a3i3a8 , 9bact-a3i056 , 9bact-a3i079 , 9bact-a3i222 , 9bact-a3hun9 |
Title : High quality draft genome sequence of Segniliparus rugosus CDC 945(T)= (ATCC BAA-974(T)) - Earl_2011_Stand.Genomic.Sci_5_389 |
Author(s) : Earl AM , Desjardins CA , Fitzgerald MG , Arachchi HM , Zeng Q , Mehta T , Griggs A , Birren BW , Toney NC , Carr J , Posey J , Butler WR |
Ref : Stand Genomic Sci , 5 :389 , 2011 |
PubMedID: 22675588 |
Gene_locus related to this paper: 9acto-e5xtw5 , 9acto-e5xpt7 , 9acto-e5xpt8 , 9acto-e5xue1 , 9acto-e5xr49 , 9actn-e5xql0 |
Title : Comparative genomics yields insights into niche adaptation of plant vascular wilt pathogens - Klosterman_2011_PLoS.Pathog_7_e1002137 |
Author(s) : Klosterman SJ , Subbarao KV , Kang S , Veronese P , Gold SE , Thomma BP , Chen Z , Henrissat B , Lee YH , Park J , Garcia-Pedrajas MD , Barbara DJ , Anchieta A , de Jonge R , Santhanam P , Maruthachalam K , Atallah Z , Amyotte SG , Paz Z , Inderbitzin P , Hayes RJ , Heiman DI , Young S , Zeng Q , Engels R , Galagan J , Cuomo CA , Dobinson KF , Ma LJ |
Ref : PLoS Pathog , 7 :e1002137 , 2011 |
PubMedID: 21829347 |
Gene_locus related to this paper: vera1-c9srn2 , vera1-c9sn46 , verdv-g2wq49 , verdv-g2xca2 , vera1-c9sea3 , verdv-g2wzn4 , vera1-c9sek2 , verdv-g2wym5 , verdv-g2x5f3 , vera1-c9sx20 , vera1-c9sw01 , verdv-g2x1l1 , verdv-g2wuv4 , verdv-g2xaw5 , verdv-g2wsb2 , verdv-g2wty6 , vera1-c9si59 , verdv-g2xdu9 , vera1-c9s818 , verdv-g2xdr1 , verdv-g2wsw7 , verdv-g2wvq8 , 9pezi-a0a0g4li73 , vera1-kex1 , verdv-g2x8m5 |
Title : Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis - Desjardins_2011_PLoS.Genet_7_e1002345 |
Author(s) : Desjardins CA , Champion MD , Holder JW , Muszewska A , Goldberg J , Bailao AM , Brigido MM , Ferreira ME , Garcia AM , Grynberg M , Gujja S , Heiman DI , Henn MR , Kodira CD , Leon-Narvaez H , Longo LV , Ma LJ , Malavazi I , Matsuo AL , Morais FV , Pereira M , Rodriguez-Brito S , Sakthikumar S , Salem-Izacc SM , Sykes SM , Teixeira MM , Vallejo MC , Walter ME , Yandava C , Young S , Zeng Q , Zucker J , Felipe MS , Goldman GH , Haas BJ , McEwen JG , Nino-Vega G , Puccia R , San-Blas G , Soares CMF , Birren BW , Cuomo CA |
Ref : PLoS Genet , 7 :e1002345 , 2011 |
PubMedID: 22046142 |
Gene_locus related to this paper: parbd-c1gc95 , parbp-c0s0d7 , parbp-c0s257 , parbd-c1g8z9 , parba-c1grf0 , parbp-c0s816 , parbp-c0s5g4 , parbd-c1g5f5 , parbd-c1fzf9 , parba-kex1 , parbd-kex1 , parbp-kex1 , parba-cbpya , parbp-cbpya |
Title : Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts - D'Souza_2011_MBio_2_e00342 |
Author(s) : D'Souza CA , Kronstad JW , Taylor G , Warren R , Yuen M , Hu G , Jung WH , Sham A , Kidd SE , Tangen K , Lee N , Zeilmaker T , Sawkins J , McVicker G , Shah S , Gnerre S , Griggs A , Zeng Q , Bartlett K , Li W , Wang X , Heitman J , Stajich JE , Fraser JA , Meyer W , Carter D , Schein J , Krzywinski M , Kwon-Chung KJ , Varma A , Wang J , Brunham R , Fyfe M , Ouellette BF , Siddiqui A , Marra M , Jones S , Holt R , Birren BW , Galagan JE , Cuomo CA |
Ref : MBio , 2 :e00342 , 2011 |
PubMedID: 21304167 |
Gene_locus related to this paper: crygw-e6qy09 , crygw-e6r2n3 , crygw-e6r7g6 , crygw-e6rbd6 , crygw-e6rcm3 , crygw-e6rg44 , cryne-q5ka03 , cryne-q5km63 , cryne-q5knq0 , cryne-q55va3 , crynj-q5kpe0 , crygr-a0a095cfy5 , crygw-kex1 |
Title : Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control - Neafsey_2010_Genome.Res_20_938 |
Author(s) : Neafsey DE , Barker BM , Sharpton TJ , Stajich JE , Park DJ , Whiston E , Hung CY , McMahan C , White J , Sykes S , Heiman D , Young S , Zeng Q , Abouelleil A , Aftuck L , Bessette D , Brown A , FitzGerald M , Lui A , Macdonald JP , Priest M , Orbach MJ , Galgiani JN , Kirkland TN , Cole GT , Birren BW , Henn MR , Taylor JW , Rounsley SD |
Ref : Genome Res , 20 :938 , 2010 |
PubMedID: 20516208 |
Gene_locus related to this paper: cocp7-c5p2u8 , cocp7-c5p5s7 , cocp7-c5pe69 , cocp7-c5pf68 , cocp7-c5pgk6 , cocim-j3ka92 , cocp7-c5phc6 , cocps-e9d3i4 , cocit-a0a0j8rde7 , cocps-e9csw0 , cocps-e9dgm8 |
Title : Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole-genome duplication - Ma_2009_PLoS.Genet_5_e1000549 |
Author(s) : Ma LJ , Ibrahim AS , Skory C , Grabherr MG , Burger G , Butler M , Elias M , Idnurm A , Lang BF , Sone T , Abe A , Calvo SE , Corrochano LM , Engels R , Fu J , Hansberg W , Kim JM , Kodira CD , Koehrsen MJ , Liu B , Miranda-Saavedra D , O'Leary S , Ortiz-Castellanos L , Poulter R , Rodriguez-Romero J , Ruiz-Herrera J , Shen YQ , Zeng Q , Galagan J , Birren BW , Cuomo CA , Wickes BL |
Ref : PLoS Genet , 5 :e1000549 , 2009 |
PubMedID: 19578406 |
Title : DNA sequence and analysis of human chromosome 18 - Nusbaum_2005_Nature_437_551 |
Author(s) : Nusbaum C , Zody MC , Borowsky ML , Kamal M , Kodira CD , Taylor TD , Whittaker CA , Chang JL , Cuomo CA , Dewar K , Fitzgerald MG , Yang X , Abouelleil A , Allen NR , Anderson S , Bloom T , Bugalter B , Butler J , Cook A , Decaprio D , Engels R , Garber M , Gnirke A , Hafez N , Hall JL , Norman CH , Itoh T , Jaffe DB , Kuroki Y , Lehoczky J , Lui A , Macdonald P , Mauceli E , Mikkelsen TS , Naylor JW , Nicol R , Nguyen C , Noguchi H , O'Leary SB , O'Neill K , Piqani B , Smith CL , Talamas JA , Topham K , Totoki Y , Toyoda A , Wain HM , Young SK , Zeng Q , Zimmer AR , Fujiyama A , Hattori M , Birren BW , Sakaki Y , Lander ES |
Ref : Nature , 437 :551 , 2005 |
PubMedID: 16177791 |
Gene_locus related to this paper: human-LIPG |
Title : Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum - Nolling_2001_J.Bacteriol_183_4823 |
Author(s) : Nolling J , Breton G , Omelchenko MV , Makarova KS , Zeng Q , Gibson R , Lee HM , Dubois J , Qiu D , Hitti J , Wolf YI , Tatusov RL , Sabathe F , Doucette-Stamm L , Soucaille P , Daly MJ , Bennett GN , Koonin EV , Smith DR |
Ref : Journal of Bacteriology , 183 :4823 , 2001 |
PubMedID: 11466286 |
Gene_locus related to this paper: cloab-CAC2917 , cloab-q97db4 , cloab-q97fl1 , cloac-CAC0202 , cloac-CAC0719 , cloac-CAC0816 , cloac-CAC1022 , cloac-CAC1028 , cloac-CAC1450 , cloac-CAC1470 , cloac-CAC1962 , cloac-CAC2246 , cloac-CAC2472 , cloac-CAC2688 , cloac-CAC2936 , cloac-CAC3022 , cloac-CAC3402 , cloac-CAC3407 , cloac-CAC3432 , cloac-CAC3515 , cloac-CAC3665 , cloac-CAP0071 , cloac-CAP0097 , cloac-CAP0133 , cloac-pnbae |