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References (27)

Title : Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts - Ma_2016_Nat.Commun_7_10740
Author(s) : Ma L , Chen Z , Huang da W , Kutty G , Ishihara M , Wang H , Abouelleil A , Bishop L , Davey E , Deng R , Deng X , Fan L , Fantoni G , FitzGerald M , Gogineni E , Goldberg JM , Handley G , Hu X , Huber C , Jiao X , Jones K , Levin JZ , Liu Y , Macdonald P , Melnikov A , Raley C , Sassi M , Sherman BT , Song X , Sykes S , Tran B , Walsh L , Xia Y , Yang J , Young S , Zeng Q , Zheng X , Stephens R , Nusbaum C , Birren BW , Azadi P , Lempicki RA , Cuomo CA , Kovacs JA
Ref : Nat Commun , 7 :10740 , 2016
Abstract :
PubMedSearch : Ma_2016_Nat.Commun_7_10740
PubMedID: 26899007
Gene_locus related to this paper: pnec8-a0a0w4zi95 , pnemu-m7nra0 , pnej8-l0pgn2 , pnemu-m7nsb0

Title : Draft Genome Sequence of the Cellulolytic Fungus Chaetomium globosum - Cuomo_2015_Genome.Announc_3_E00021
Author(s) : Cuomo CA , Untereiner WA , Ma LJ , Grabherr M , Birren BW
Ref : Genome Announc , 3 : , 2015
Abstract :
PubMedSearch : Cuomo_2015_Genome.Announc_3_E00021
PubMedID: 25720678
Gene_locus related to this paper: chagb-q2h5j0 , chagb-q2h6w8 , chagb-q2gpq3 , chagb-q2gyn8 , chagb-q2h2d0

Title : Genome Sequence of the Pathogenic Fungus Sporothrix schenckii (ATCC 58251) - Cuomo_2014_Genome.Announc_2_E00446
Author(s) : Cuomo CA , Rodriguez-Del Valle N , Perez-Sanchez L , Abouelleil A , Goldberg J , Young S , Zeng Q , Birren BW
Ref : Genome Announc , 2 :E0044614 , 2014
Abstract :
PubMedSearch : Cuomo_2014_Genome.Announc_2_E00446
PubMedID: 24855299
Gene_locus related to this paper: spos1-u7q5l6 , spos1-u7phh2 , spos1-u7pxz2 , spos1-u7q332 , spos1-u7pw92

Title : Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses - O'Connell_2012_Nat.Genet_44_1060
Author(s) : O'Connell RJ , Thon MR , Hacquard S , Amyotte SG , Kleemann J , Torres MF , Damm U , Buiate EA , Epstein L , Alkan N , Altmuller J , Alvarado-Balderrama L , Bauser CA , Becker C , Birren BW , Chen Z , Choi J , Crouch JA , Duvick JP , Farman MA , Gan P , Heiman D , Henrissat B , Howard RJ , Kabbage M , Koch C , Kracher B , Kubo Y , Law AD , Lebrun MH , Lee YH , Miyara I , Moore N , Neumann U , Nordstrom K , Panaccione DG , Panstruga R , Place M , Proctor RH , Prusky D , Rech G , Reinhardt R , Rollins JA , Rounsley S , Schardl CL , Schwartz DC , Shenoy N , Shirasu K , Sikhakolli UR , Stuber K , Sukno SA , Sweigard JA , Takano Y , Takahara H , Trail F , van der Does HC , Voll LM , Will I , Young S , Zeng Q , Zhang J , Zhou S , Dickman MB , Schulze-Lefert P , Ver Loren van Themaat E , Ma LJ , Vaillancourt LJ
Ref : Nat Genet , 44 :1060 , 2012
Abstract :
PubMedSearch : O'Connell_2012_Nat.Genet_44_1060
PubMedID: 22885923
Gene_locus related to this paper: colgm-kex1 , colhi-h1vve5 , colhi-h1vkk5 , colgm-e3qtg4 , colhi-h1vbq5 , colgm-e3qyh7 , colgm-e3q7u5 , colhi-h1vs61 , colgm-e3qip4 , colgm-e3qv97 , colhi-h1v665 , colgm-e3qky4 , colhi-h1vd91 , colhi-h1uvl1 , colhi-h1v7k5 , colgm-e3qu96 , colhi-h1vhh1 , colhi-h1v638 , colhi-h1vcz3 , colgm-e3qwt6 , colgm-e3q3z6 , colhi-h1vmh6 , colgm-e3qqq8 , colhi-h1v0e8 , colgm-e3qyt9 , colgm-e3qby6 , colgm-e3qsm5 , colgm-e3q6f6 , colgm-e3qwt4 , colgm-e3qb89 , colhi-h1vh96 , colgm-e3qwz9 , colgm-e3qbd3 , colgm-e3qtz0 , colhi-h1w5n4 , colgm-e3q7y3 , colgm-e3qpz1 , colhi-h1v2e4 , colgm-e3qux5 , colgm-e3qx16 , colgm-cbpya , colgm-e3q8b3

Title : Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011 - Grad_2012_Proc.Natl.Acad.Sci.U.S.A_109_3065
Author(s) : Grad YH , Lipsitch M , Feldgarden M , Arachchi HM , Cerqueira GC , FitzGerald M , Godfrey P , Haas BJ , Murphy CI , Russ C , Sykes S , Walker BJ , Wortman JR , Young S , Zeng Q , Abouelleil A , Bochicchio J , Chauvin S , Desmet T , Gujja S , McCowan C , Montmayeur A , Steelman S , Frimodt-Moller J , Petersen AM , Struve C , Krogfelt KA , Bingen E , Weill FX , Lander ES , Nusbaum C , Birren BW , Hung DT , Hanage WP
Ref : Proc Natl Acad Sci U S A , 109 :3065 , 2012
Abstract :
PubMedSearch : Grad_2012_Proc.Natl.Acad.Sci.U.S.A_109_3065
PubMedID: 22315421
Gene_locus related to this paper: ecoli-fes , ecoli-MCMK , ecoli-yaim , ecoli-ycfp , ecoli-YFBB , ecoli-yhet , ecoli-yiel , ecoli-yqia , ecoli-YfhR

Title : Comparative genome analysis of Trichophyton rubrum and related dermatophytes reveals candidate genes involved in infection - Martinez_2012_MBio_3_e00259
Author(s) : Martinez DA , Oliver BG , Graser Y , Goldberg JM , Li W , Martinez-Rossi NM , Monod M , Shelest E , Barton RC , Birch E , Brakhage AA , Chen Z , Gurr SJ , Heiman D , Heitman J , Kosti I , Rossi A , Saif S , Samalova M , Saunders CW , Shea T , Summerbell RC , Xu J , Young S , Zeng Q , Birren BW , Cuomo CA , White TC
Ref : MBio , 3 :e00259 , 2012
Abstract :
PubMedSearch : Martinez_2012_MBio_3_e00259
PubMedID: 22951933
Gene_locus related to this paper: artgp-e4uup9 , artgp-e4v450 , artgp-e5qzf5 , artgp-e5r1t8 , artoc-c5fc55 , artoc-c5fds1 , artoc-c5fig8 , artoc-c5fj58 , artoc-c5fme4 , artoc-c5fva9 , triec-f2ph15 , triec-f2plk8 , triec-f2pwm2 , trirc-f2sf42 , trirc-f2sn39 , trirc-f2srv5 , trirc-f2sy06 , triru-q5j6j0 , triru-SCPB , triru-SPCA , trit1-f2rna8 , trit1-f2s2t8 , trivh-d4dbr9 , artbc-d4avu9 , artoc-c5fsf7 , artgp-e4unv7 , artoc-c5g0v3 , triec-f2pub4 , triec-f2pi43 , artgp-e4v6t4 , trit1-f2s3n3 , artoc-c5fnl7 , artgp-e4upq1 , artgp-e4uzl7 , triec-f2pp24 , triru-a0a022u299 , 9euro-a0a059jk56 , artoc-c5fu24 , artoc-c5fic4 , artgp-e4uza8 , triec-f2pqf3 , artgp-e4uv28 , artoc-c5fiv8 , triru-a0a022w2d0 , artgp-e4uvk8 , triru-a0a178f289 , artoc-c5fyj1 , artoc-cbpya , artoc-kex1

Title : Comparative functional genomics of the fission yeasts - Rhind_2011_Science_332_930
Author(s) : Rhind N , Chen Z , Yassour M , Thompson DA , Haas BJ , Habib N , Wapinski I , Roy S , Lin MF , Heiman DI , Young SK , Furuya K , Guo Y , Pidoux A , Chen HM , Robbertse B , Goldberg JM , Aoki K , Bayne EH , Berlin AM , Desjardins CA , Dobbs E , Dukaj L , Fan L , Fitzgerald MG , French C , Gujja S , Hansen K , Keifenheim D , Levin JZ , Mosher RA , Muller CA , Pfiffner J , Priest M , Russ C , Smialowska A , Swoboda P , Sykes SM , Vaughn M , Vengrova S , Yoder R , Zeng Q , Allshire R , Baulcombe D , Birren BW , Brown W , Ekwall K , Kellis M , Leatherwood J , Levin H , Margalit H , Martienssen R , Nieduszynski CA , Spatafora JW , Friedman N , Dalgaard JZ , Baumann P , Niki H , Regev A , Nusbaum C
Ref : Science , 332 :930 , 2011
Abstract :
PubMedSearch : Rhind_2011_Science_332_930
PubMedID: 21511999
Gene_locus related to this paper: schjy-b6jxl8 , schjy-b6k0k9 , schjy-b6k7s4 , schjy-b6k575 , schcr-s9vnl9 , schoy-s9q625 , schjy-kex1 , schpo-ykv6

Title : High quality draft genome sequence of Segniliparus rugosus CDC 945(T)= (ATCC BAA-974(T)) - Earl_2011_Stand.Genomic.Sci_5_389
Author(s) : Earl AM , Desjardins CA , Fitzgerald MG , Arachchi HM , Zeng Q , Mehta T , Griggs A , Birren BW , Toney NC , Carr J , Posey J , Butler WR
Ref : Stand Genomic Sci , 5 :389 , 2011
Abstract :
PubMedSearch : Earl_2011_Stand.Genomic.Sci_5_389
PubMedID: 22675588
Gene_locus related to this paper: 9acto-e5xtw5 , 9acto-e5xpt7 , 9acto-e5xpt8 , 9acto-e5xue1 , 9acto-e5xr49 , 9actn-e5xql0

Title : Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis - Desjardins_2011_PLoS.Genet_7_e1002345
Author(s) : Desjardins CA , Champion MD , Holder JW , Muszewska A , Goldberg J , Bailao AM , Brigido MM , Ferreira ME , Garcia AM , Grynberg M , Gujja S , Heiman DI , Henn MR , Kodira CD , Leon-Narvaez H , Longo LV , Ma LJ , Malavazi I , Matsuo AL , Morais FV , Pereira M , Rodriguez-Brito S , Sakthikumar S , Salem-Izacc SM , Sykes SM , Teixeira MM , Vallejo MC , Walter ME , Yandava C , Young S , Zeng Q , Zucker J , Felipe MS , Goldman GH , Haas BJ , McEwen JG , Nino-Vega G , Puccia R , San-Blas G , Soares CMF , Birren BW , Cuomo CA
Ref : PLoS Genet , 7 :e1002345 , 2011
Abstract :
PubMedSearch : Desjardins_2011_PLoS.Genet_7_e1002345
PubMedID: 22046142
Gene_locus related to this paper: parbd-c1gc95 , parbp-c0s0d7 , parbp-c0s257 , parbd-c1g8z9 , parba-c1grf0 , parbp-c0s816 , parbp-c0s5g4 , parbd-c1g5f5 , parbd-c1fzf9 , parba-kex1 , parbd-kex1 , parbp-kex1 , parba-cbpya , parbp-cbpya

Title : Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts - D'Souza_2011_MBio_2_e00342
Author(s) : D'Souza CA , Kronstad JW , Taylor G , Warren R , Yuen M , Hu G , Jung WH , Sham A , Kidd SE , Tangen K , Lee N , Zeilmaker T , Sawkins J , McVicker G , Shah S , Gnerre S , Griggs A , Zeng Q , Bartlett K , Li W , Wang X , Heitman J , Stajich JE , Fraser JA , Meyer W , Carter D , Schein J , Krzywinski M , Kwon-Chung KJ , Varma A , Wang J , Brunham R , Fyfe M , Ouellette BF , Siddiqui A , Marra M , Jones S , Holt R , Birren BW , Galagan JE , Cuomo CA
Ref : MBio , 2 :e00342 , 2011
Abstract :
PubMedSearch : D'Souza_2011_MBio_2_e00342
PubMedID: 21304167
Gene_locus related to this paper: crygw-e6qy09 , crygw-e6r2n3 , crygw-e6r7g6 , crygw-e6rbd6 , crygw-e6rcm3 , crygw-e6rg44 , cryne-q5ka03 , cryne-q5km63 , cryne-q5knq0 , cryne-q55va3 , crynj-q5kpe0 , crygr-a0a095cfy5 , crygw-kex1

Title : Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control - Neafsey_2010_Genome.Res_20_938
Author(s) : Neafsey DE , Barker BM , Sharpton TJ , Stajich JE , Park DJ , Whiston E , Hung CY , McMahan C , White J , Sykes S , Heiman D , Young S , Zeng Q , Abouelleil A , Aftuck L , Bessette D , Brown A , FitzGerald M , Lui A , Macdonald JP , Priest M , Orbach MJ , Galgiani JN , Kirkland TN , Cole GT , Birren BW , Henn MR , Taylor JW , Rounsley SD
Ref : Genome Res , 20 :938 , 2010
Abstract :
PubMedSearch : Neafsey_2010_Genome.Res_20_938
PubMedID: 20516208
Gene_locus related to this paper: cocp7-c5p2u8 , cocp7-c5p5s7 , cocp7-c5pe69 , cocp7-c5pf68 , cocp7-c5pgk6 , cocim-j3ka92 , cocp7-c5phc6 , cocps-e9d3i4 , cocit-a0a0j8rde7 , cocps-e9csw0 , cocps-e9dgm8

Title : Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus) - Stajich_2010_Proc.Natl.Acad.Sci.U.S.A_107_11889
Author(s) : Stajich JE , Wilke SK , Ahren D , Au CH , Birren BW , Borodovsky M , Burns C , Canback B , Casselton LA , Cheng CK , Deng J , Dietrich FS , Fargo DC , Farman ML , Gathman AC , Goldberg J , Guigo R , Hoegger PJ , Hooker JB , Huggins A , James TY , Kamada T , Kilaru S , Kodira C , Kues U , Kupfer D , Kwan HS , Lomsadze A , Li W , Lilly WW , Ma LJ , Mackey AJ , Manning G , Martin F , Muraguchi H , Natvig DO , Palmerini H , Ramesh MA , Rehmeyer CJ , Roe BA , Shenoy N , Stanke M , Ter-Hovhannisyan V , Tunlid A , Velagapudi R , Vision TJ , Zeng Q , Zolan ME , Pukkila PJ
Ref : Proc Natl Acad Sci U S A , 107 :11889 , 2010
Abstract :
PubMedSearch : Stajich_2010_Proc.Natl.Acad.Sci.U.S.A_107_11889
PubMedID: 20547848
Gene_locus related to this paper: copc7-a8n2b8 , copc7-a8n3e0 , copc7-a8n3e1 , copc7-a8n6a5 , copc7-a8n8h4 , copc7-a8n702 , copc7-a8n941 , copc7-a8nkc7 , copc7-a8nll5 , copc7-a8nll6 , copc7-a8nqf4 , copc7-a8nqg3 , copc7-a8nqv8 , copc7-a8nvb5 , copc7-a8nwm2 , copc7-a8nz18 , copc7-a8p0p4 , copc7-d6rlx1 , copc7-d6rnh7 , copc7-kex1 , copci-b9u444 , copc7-a8nb05 , copc7-a8nha0 , copci-b9u443 , copc7-a8nq30 , copc7-a8nh79 , copc7-d6rm78 , copc7-a8nzs7 , copc7-axe1

Title : A catalog of reference genomes from the human microbiome - Nelson_2010_Science_328_994
Author(s) : Nelson KE , Weinstock GM , Highlander SK , Worley KC , Creasy HH , Wortman JR , Rusch DB , Mitreva M , Sodergren E , Chinwalla AT , Feldgarden M , Gevers D , Haas BJ , Madupu R , Ward DV , Birren BW , Gibbs RA , Methe B , Petrosino JF , Strausberg RL , Sutton GG , White OR , Wilson RK , Durkin S , Giglio MG , Gujja S , Howarth C , Kodira CD , Kyrpides N , Mehta T , Muzny DM , Pearson M , Pepin K , Pati A , Qin X , Yandava C , Zeng Q , Zhang L , Berlin AM , Chen L , Hepburn TA , Johnson J , McCorrison J , Miller J , Minx P , Nusbaum C , Russ C , Sykes SM , Tomlinson CM , Young S , Warren WC , Badger J , Crabtree J , Markowitz VM , Orvis J , Cree A , Ferriera S , Fulton LL , Fulton RS , Gillis M , Hemphill LD , Joshi V , Kovar C , Torralba M , Wetterstrand KA , Abouellleil A , Wollam AM , Buhay CJ , Ding Y , Dugan S , Fitzgerald MG , Holder M , Hostetler J , Clifton SW , Allen-Vercoe E , Earl AM , Farmer CN , Liolios K , Surette MG , Xu Q , Pohl C , Wilczek-Boney K , Zhu D
Ref : Science , 328 :994 , 2010
Abstract :
PubMedSearch : Nelson_2010_Science_328_994
PubMedID: 20489017
Gene_locus related to this paper: strp2-q04l35 , strpn-AXE1 , strpn-pepx

Title : Evolution of pathogenicity and sexual reproduction in eight Candida genomes - Butler_2009_Nature_459_657
Author(s) : Butler G , Rasmussen MD , Lin MF , Santos MA , Sakthikumar S , Munro CA , Rheinbay E , Grabherr M , Forche A , Reedy JL , Agrafioti I , Arnaud MB , Bates S , Brown AJ , Brunke S , Costanzo MC , Fitzpatrick DA , de Groot PW , Harris D , Hoyer LL , Hube B , Klis FM , Kodira C , Lennard N , Logue ME , Martin R , Neiman AM , Nikolaou E , Quail MA , Quinn J , Santos MC , Schmitzberger FF , Sherlock G , Shah P , Silverstein KA , Skrzypek MS , Soll D , Staggs R , Stansfield I , Stumpf MP , Sudbery PE , Srikantha T , Zeng Q , Berman J , Berriman M , Heitman J , Gow NA , Lorenz MC , Birren BW , Kellis M , Cuomo CA
Ref : Nature , 459 :657 , 2009
Abstract :
PubMedSearch : Butler_2009_Nature_459_657
PubMedID: 19465905
Gene_locus related to this paper: canal-ATG15 , canal-bna7 , canal-c4yl13 , canal-LIP1 , canal-LIP2 , canal-LIP3 , canal-LIP4 , canal-LIP5 , canal-LIP6 , canal-LIP7 , canal-LIP8 , canal-LIP9 , canal-LIP10 , canal-ppme1 , canal-q5a0c9 , canal-q5a2i9 , canal-q5a042 , canal-q5ad17 , canal-q5aeu3 , canal-q5afp8 , canal-q5ag57 , canal-q5ai09 , canal-q5ai12 , canal-q5ajt3 , canal-q5akz5 , canal-q5apu4 , canal-q59l46 , canal-q59m48 , canal-q59nw6 , canal-q59u61 , canal-q59u64 , canal-q59vp0 , canal-q59y97 , canaw-c4ykb1 , canaw-c4yrn6 , canaw-c4yrn9 , canaw-c4yrr3 , canaw-c4yrv3 , canaw-c4ys26 , cantt-c5m3d7 , cantt-c5m3y5 , cantt-c5m4x0 , cantt-c5m5e8 , cantt-c5m5w2 , cantt-c5m8s7 , cantt-c5m9c2 , cantt-c5m465 , cantt-c5m751 , cantt-c5m793 , cantt-c5m893 , cantt-c5ma78 , cantt-c5mag0 , cantt-c5mbb8 , cantt-c5mc53 , cantt-c5md87 , cantt-c5mdy3 , cantt-c5mey7 , cantt-c5mfg0 , cantt-c5mfh8 , cantt-c5mg56 , cantt-c5mgj0 , cantt-c5mh75 , cantt-c5mh80 , cantt-c5mh89 , cantt-c5mhh0 , cantt-c5mhn5 , cantt-c5mij5 , cantt-c5min7 , clal4-c4xvt8 , clal4-c4xwy4 , clal4-c4xy03 , clal4-c4xyx9 , clal4-c4xzz1 , clal4-c4y3e1 , clal4-c4y4f2 , clal4-c4y4w8 , clal4-c4y5j4 , clal4-c4y5j9 , clal4-c4y7z7 , clal4-c4y8q1 , clal4-c4y035 , clal4-c4y481 , clal4-c4y538 , clal4-c4y898 , clal4-c4yas2 , clal4-c4yba6 , clal4-c4yba7 , clal4-c4yc85 , lodel-a5drz3 , lodel-a5ds97 , lodel-a5dsc0 , lodel-a5duu4 , lodel-a5duy7 , lodel-a5dv03 , lodel-a5dv46 , lodel-a5dw16 , lodel-a5dwv7 , lodel-a5dww6 , lodel-a5dxf3 , lodel-a5e0z5 , lodel-a5e1c1 , lodel-a5e1l4 , lodel-a5e1p3 , lodel-a5e2s1 , lodel-a5e2t8 , lodel-a5e2v2 , lodel-a5e4u8 , lodel-a5e5a9 , lodel-a5e5k1 , lodel-a5e5z7 , lodel-a5e6w1 , lodel-a5e028 , lodel-atg15 , lodel-kex1 , picgu-a5d9u2 , picgu-a5dav0 , picgu-a5dbk0 , picgu-a5dc45 , picgu-a5dc73 , picgu-a5dc74 , picgu-a5dc75 , picgu-a5ddt8 , picgu-a5dev7 , picgu-a5dh90 , picgu-a5dhe3 , picgu-a5di38 , picgu-a5dj06 , picgu-a5dkd8 , picgu-a5dle9 , picgu-a5dlj5 , picgu-a5dm19 , picgu-a5dn92 , picgu-a5dnr3 , picgu-a5dnt6 , picgu-a5dqu5 , picgu-a5dr14 , picgu-a5drl3 , picgu-atg15 , picgu-bna7 , picgu-a5d9q3 , picgu-a5dag9 , clal4-c4y5a2 , clal4-c4y0l0 , cantt-c5mcb1 , clal4-c4y8j2 , cantt-c5m494 , clals-a0a202gac7 , canal-hda1 , picgu-a5dks8 , lodel-a5drs6 , canpc-g8bbk1 , cantt-kex1 , clal4-kex1 , picgu-kex1

Title : Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole-genome duplication - Ma_2009_PLoS.Genet_5_e1000549
Author(s) : Ma LJ , Ibrahim AS , Skory C , Grabherr MG , Burger G , Butler M , Elias M , Idnurm A , Lang BF , Sone T , Abe A , Calvo SE , Corrochano LM , Engels R , Fu J , Hansberg W , Kim JM , Kodira CD , Koehrsen MJ , Liu B , Miranda-Saavedra D , O'Leary S , Ortiz-Castellanos L , Poulter R , Rodriguez-Romero J , Ruiz-Herrera J , Shen YQ , Zeng Q , Galagan J , Birren BW , Cuomo CA , Wickes BL
Ref : PLoS Genet , 5 :e1000549 , 2009
Abstract :
PubMedSearch : Ma_2009_PLoS.Genet_5_e1000549
PubMedID: 19578406

Title : Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives - Sharpton_2009_Genome.Res_19_1722
Author(s) : Sharpton TJ , Stajich JE , Rounsley SD , Gardner MJ , Wortman JR , Jordar VS , Maiti R , Kodira CD , Neafsey DE , Zeng Q , Hung CY , McMahan C , Muszewska A , Grynberg M , Mandel MA , Kellner EM , Barker BM , Galgiani JN , Orbach MJ , Kirkland TN , Cole GT , Henn MR , Birren BW , Taylor JW
Ref : Genome Res , 19 :1722 , 2009
Abstract :
PubMedSearch : Sharpton_2009_Genome.Res_19_1722
PubMedID: 19717792
Gene_locus related to this paper: ajecg-c0nbn5 , ajecg-c0nbz4 , ajecg-c0ndw0 , ajecg-c0nqc6 , ajecg-c0nst6 , ajecg-c0ntx5 , ajecg-c0nu33 , ajecg-c0nzh6 , ajecg-c0p0h0 , ajech-c6h1y9 , ajecn-a6qs62 , ajecn-a6quy7 , ajecn-a6r2c0 , ajecn-a6r491 , ajecn-a6r635 , ajecn-a6rab7 , ajecn-a6ram0 , ajecn-a6rf08 , ajecn-a6rf70 , ajecn-atg15 , ajecn-dapb , ajeds-c5jqx1 , cocim-atg15 , cocim-bst1 , cocim-j3k8a1 , cocp7-c5p0f2 , cocp7-c5p0i6 , cocp7-c5p1s3 , cocp7-c5p1u2 , cocp7-c5p2u8 , cocp7-c5p4s8 , cocp7-c5p4z1 , cocp7-c5p5s7 , cocp7-c5p129 , cocp7-c5p172 , cocp7-c5p250 , cocps-e9ctz7 , cocp7-c5pae0 , cocp7-c5pby4 , cocp7-c5pdn8 , cocp7-c5pdv9 , cocp7-c5pe69 , cocp7-c5pf68 , cocp7-c5pgk6 , cocp7-c5pid0 , cocp7-dapb , cocps-e9cz73 , cocps-e9dbi4 , cocps-e9dbu0 , cocps-e9dfh7 , uncre-c4jf72 , uncre-c4jf79 , uncre-c4ji27 , uncre-c4jj62 , uncre-c4jjs9 , uncre-c4jk71 , uncre-c4jlm9 , uncre-c4jlp5 , uncre-c4jlr7 , uncre-c4jnk2 , uncre-c4jnn3 , uncre-c4juj6 , uncre-c4jve9 , uncre-c4jvh5 , uncre-c4jw09 , uncre-c4jyw9 , uncre-c4jzs5 , uncre-dapb , ajech-c6h9r4 , uncre-c4jds5 , cocp7-c5pii3 , ajecn-a6r5v8 , cocim-j3ka92 , cocp7-c5phc6 , ajecn-a6qtc4 , ajecn-a6r145 , cocps-e9d3i4 , cocp7-c5p7x1 , cocps-e9csw0 , ajecg-c0nww6 , ajecn-kex1 , uncre-kex1 , uncre-cbpya , cocps-kex1 , ajecn-cbpya

Title : The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization - Cuomo_2007_Science_317_1400
Author(s) : Cuomo CA , Guldener U , Xu JR , Trail F , Turgeon BG , Di Pietro A , Walton JD , Ma LJ , Baker SE , Rep M , Adam G , Antoniw J , Baldwin T , Calvo S , Chang YL , Decaprio D , Gale LR , Gnerre S , Goswami RS , Hammond-Kosack K , Harris LJ , Hilburn K , Kennell JC , Kroken S , Magnuson JK , Mannhaupt G , Mauceli E , Mewes HW , Mitterbauer R , Muehlbauer G , Munsterkotter M , Nelson D , O'Donnell K , Ouellet T , Qi W , Quesneville H , Roncero MI , Seong KY , Tetko IV , Urban M , Waalwijk C , Ward TJ , Yao J , Birren BW , Kistler HC
Ref : Science , 317 :1400 , 2007
Abstract :
PubMedSearch : Cuomo_2007_Science_317_1400
PubMedID: 17823352
Gene_locus related to this paper: fusof-f9fxz4 , gibze-a8w610 , gibze-b1pdn0 , gibze-i1r9e6 , gibze-i1rda9 , gibze-i1rdk7 , gibze-i1rec8 , gibze-i1rgs0 , gibze-i1rgy0 , gibze-i1rh52 , gibze-i1rhi8 , gibze-i1rig9 , gibze-i1rip5 , gibze-i1rpg6 , gibze-i1rsg2 , gibze-i1rv36 , gibze-i1rxm5 , gibze-i1rxp8 , gibze-i1rxv5 , gibze-i1s1u3 , gibze-i1s3j9 , gibze-i1s6l7 , gibze-i1s8i8 , gibze-i1s9x4 , gibze-ppme1 , gibze-q4huy1 , gibze-i1rg17 , gibze-i1rb76 , gibze-i1s1m7 , gibze-i1s3z6 , gibze-i1rd78 , gibze-i1rgl9 , gibze-i1rjp7 , gibze-i1s1q6 , gibze-i1ri35 , gibze-i1rf76 , gibze-i1rhp3 , gibza-a0a016pda4 , gibza-a0a016pl96 , gibze-i1rjb5 , gibze-i1rkc4 , gibze-a0a1c3ylb1 , gibze-gra11 , gibze-fsl2

Title : Dothideomycete plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum - Hane_2007_Plant.Cell_19_3347
Author(s) : Hane JK , Lowe RG , Solomon PS , Tan KC , Schoch CL , Spatafora JW , Crous PW , Kodira C , Birren BW , Galagan JE , Torriani SF , McDonald BA , Oliver RP
Ref : Plant Cell , 19 :3347 , 2007
Abstract :
PubMedSearch : Hane_2007_Plant.Cell_19_3347
PubMedID: 18024570
Gene_locus related to this paper: phano-at151 , phano-bst1 , phano-dapb , phano-q0tw42 , phano-q0txi3 , phano-q0tzh6 , phano-q0u0b1 , phano-q0u0e9 , phano-q0u0t5 , phano-q0u1e7 , phano-q0u1v1 , phano-q0u1x4 , phano-q0u2m9 , phano-q0u2y5 , phano-q0u3i1 , phano-q0u5t8 , phano-q0u8z8 , phano-q0u382 , phano-q0u622 , phano-q0u753 , phano-q0uac8 , phano-q0ucn2 , phano-q0udp4 , phano-q0udr2 , phano-q0uem1 , phano-q0uet5 , phano-q0ufs1 , phano-q0ug08 , phano-q0ugf2 , phano-q0uha0 , phano-q0ui22 , phano-q0ukj9 , phano-q0unt6 , phano-q0upq4 , phano-q0uq74 , phano-q0uq76 , phano-q0urz6 , phano-q0uua1 , phano-q0uuc4 , phano-q0uuc6 , phano-q0uup2 , phano-q0uv86 , phano-q0uwb7 , phano-q0uyc1 , phano-q0uyf1 , phano-q0uyi9 , phano-q0v0y6 , phano-q0v1c5 , phano-q0v1s1 , phano-q0v2i6 , phano-q0v4x4 , phano-q0v5x9 , phano-q0v6t6 , phano-q0v6w1 , phano-q0v7e6 , phano-q0v615 , phano-q0uru8 , phano-q0txx8 , phano-q0u4u8 , phano-q0v3l0 , phano-q0ua76 , phano-q0ty51 , phano-q0twk1 , phano-q0v263 , phano-q0uh92 , phano-q0uxx8 , phano-q0v697 , phano-q0ug10 , phano-q0v5u8 , phano-q0u1s8 , phano-q0uy34 , phano-q0twn7 , phano-elca , phano-cbpya , phano-kex1 , phano-q0v778

Title : Human chromosome 11 DNA sequence and analysis including novel gene identification - Taylor_2006_Nature_440_497
Author(s) : Taylor TD , Noguchi H , Totoki Y , Toyoda A , Kuroki Y , Dewar K , Lloyd C , Itoh T , Takeda T , Kim DW , She X , Barlow KF , Bloom T , Bruford E , Chang JL , Cuomo CA , Eichler E , Fitzgerald MG , Jaffe DB , LaButti K , Nicol R , Park HS , Seaman C , Sougnez C , Yang X , Zimmer AR , Zody MC , Birren BW , Nusbaum C , Fujiyama A , Hattori M , Rogers J , Lander ES , Sakaki Y
Ref : Nature , 440 :497 , 2006
Abstract :
PubMedSearch : Taylor_2006_Nature_440_497
PubMedID: 16554811
Gene_locus related to this paper: human-PRCP

Title : DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage - Zody_2006_Nature_440_1045
Author(s) : Zody MC , Garber M , Adams DJ , Sharpe T , Harrow J , Lupski JR , Nicholson C , Searle SM , Wilming L , Young SK , Abouelleil A , Allen NR , Bi W , Bloom T , Borowsky ML , Bugalter BE , Butler J , Chang JL , Chen CK , Cook A , Corum B , Cuomo CA , de Jong PJ , Decaprio D , Dewar K , FitzGerald M , Gilbert J , Gibson R , Gnerre S , Goldstein S , Grafham DV , Grocock R , Hafez N , Hagopian DS , Hart E , Norman CH , Humphray S , Jaffe DB , Jones M , Kamal M , Khodiyar VK , LaButti K , Laird G , Lehoczky J , Liu X , Lokyitsang T , Loveland J , Lui A , Macdonald P , Major JE , Matthews L , Mauceli E , McCarroll SA , Mihalev AH , Mudge J , Nguyen C , Nicol R , O'Leary SB , Osoegawa K , Schwartz DC , Shaw-Smith C , Stankiewicz P , Steward C , Swarbreck D , Venkataraman V , Whittaker CA , Yang X , Zimmer AR , Bradley A , Hubbard T , Birren BW , Rogers J , Lander ES , Nusbaum C
Ref : Nature , 440 :1045 , 2006
Abstract :
PubMedSearch : Zody_2006_Nature_440_1045
PubMedID: 16625196
Gene_locus related to this paper: human-NLGN2 , human-NOTUM

Title : DNA sequence and analysis of human chromosome 8 - Nusbaum_2006_Nature_439_331
Author(s) : Nusbaum C , Mikkelsen TS , Zody MC , Asakawa S , Taudien S , Garber M , Kodira CD , Schueler MG , Shimizu A , Whittaker CA , Chang JL , Cuomo CA , Dewar K , Fitzgerald MG , Yang X , Allen NR , Anderson S , Asakawa T , Blechschmidt K , Bloom T , Borowsky ML , Butler J , Cook A , Corum B , DeArellano K , Decaprio D , Dooley KT , Dorris L, 3rd , Engels R , Glockner G , Hafez N , Hagopian DS , Hall JL , Ishikawa SK , Jaffe DB , Kamat A , Kudoh J , Lehmann R , Lokitsang T , Macdonald P , Major JE , Matthews CD , Mauceli E , Menzel U , Mihalev AH , Minoshima S , Murayama Y , Naylor JW , Nicol R , Nguyen C , O'Leary SB , O'Neill K , Parker SC , Polley A , Raymond CK , Reichwald K , Rodriguez J , Sasaki T , Schilhabel M , Siddiqui R , Smith CL , Sneddon TP , Talamas JA , Tenzin P , Topham K , Venkataraman V , Wen G , Yamazaki S , Young SK , Zeng Q , Zimmer AR , Rosenthal A , Birren BW , Platzer M , Shimizu N , Lander ES
Ref : Nature , 439 :331 , 2006
Abstract :
PubMedSearch : Nusbaum_2006_Nature_439_331
PubMedID: 16421571
Gene_locus related to this paper: human-TG

Title : Analysis of the DNA sequence and duplication history of human chromosome 15 - Zody_2006_Nature_440_671
Author(s) : Zody MC , Garber M , Sharpe T , Young SK , Rowen L , O'Neill K , Whittaker CA , Kamal M , Chang JL , Cuomo CA , Dewar K , Fitzgerald MG , Kodira CD , Madan A , Qin S , Yang X , Abbasi N , Abouelleil A , Arachchi HM , Baradarani L , Birditt B , Bloom S , Bloom T , Borowsky ML , Burke J , Butler J , Cook A , DeArellano K , Decaprio D , Dorris L, 3rd , Dors M , Eichler EE , Engels R , Fahey J , Fleetwood P , Friedman C , Gearin G , Hall JL , Hensley G , Johnson E , Jones C , Kamat A , Kaur A , Locke DP , Munson G , Jaffe DB , Lui A , Macdonald P , Mauceli E , Naylor JW , Nesbitt R , Nicol R , O'Leary SB , Ratcliffe A , Rounsley S , She X , Sneddon KM , Stewart S , Sougnez C , Stone SM , Topham K , Vincent D , Wang S , Zimmer AR , Birren BW , Hood L , Lander ES , Nusbaum C
Ref : Nature , 440 :671 , 2006
Abstract :
PubMedSearch : Zody_2006_Nature_440_671
PubMedID: 16572171
Gene_locus related to this paper: human-DPP8 , human-LIPC , human-SPG21

Title : Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis - Kamper_2006_Nature_444_97
Author(s) : Kamper J , Kahmann R , Bolker M , Ma LJ , Brefort T , Saville BJ , Banuett F , Kronstad JW , Gold SE , Muller O , Perlin MH , Wosten HA , de Vries R , Ruiz-Herrera J , Reynaga-Pena CG , Snetselaar K , McCann M , Perez-Martin J , Feldbrugge M , Basse CW , Steinberg G , Ibeas JI , Holloman W , Guzman P , Farman M , Stajich JE , Sentandreu R , Gonzalez-Prieto JM , Kennell JC , Molina L , Schirawski J , Mendoza-Mendoza A , Greilinger D , Munch K , Rossel N , Scherer M , Vranes M , Ladendorf O , Vincon V , Fuchs U , Sandrock B , Meng S , Ho EC , Cahill MJ , Boyce KJ , Klose J , Klosterman SJ , Deelstra HJ , Ortiz-Castellanos L , Li W , Sanchez-Alonso P , Schreier PH , Hauser-Hahn I , Vaupel M , Koopmann E , Friedrich G , Voss H , Schluter T , Margolis J , Platt D , Swimmer C , Gnirke A , Chen F , Vysotskaia V , Mannhaupt G , Guldener U , Munsterkotter M , Haase D , Oesterheld M , Mewes HW , Mauceli EW , Decaprio D , Wade CM , Butler J , Young S , Jaffe DB , Calvo S , Nusbaum C , Galagan J , Birren BW
Ref : Nature , 444 :97 , 2006
Abstract :
PubMedSearch : Kamper_2006_Nature_444_97
PubMedID: 17080091
Gene_locus related to this paper: ustma-q4p4j7 , ustma-q4p5d2 , ustma-q4p8h8 , ustma-q4p8x7 , ustma-q4p082 , ustma-q4p194 , ustma-q4pa07 , ustma-q4pas0 , ustma-q4pbb4 , ustma-q4pg48

Title : The genome sequence of the rice blast fungus Magnaporthe grisea - Dean_2005_Nature_434_980
Author(s) : Dean RA , Talbot NJ , Ebbole DJ , Farman ML , Mitchell TK , Orbach MJ , Thon M , Kulkarni R , Xu JR , Pan H , Read ND , Lee YH , Carbone I , Brown D , Oh YY , Donofrio N , Jeong JS , Soanes DM , Djonovic S , Kolomiets E , Rehmeyer C , Li W , Harding M , Kim S , Lebrun MH , Bohnert H , Coughlan S , Butler J , Calvo S , Ma LJ , Nicol R , Purcell S , Nusbaum C , Galagan JE , Birren BW
Ref : Nature , 434 :980 , 2005
Abstract :
PubMedSearch : Dean_2005_Nature_434_980
PubMedID: 15846337
Gene_locus related to this paper: maggr-a4qqu1 , maggr-a4uuq1 , mago7-g4n0f1 , maggr-a4qy60 , maggr-a4qyj3 , maggr-a4r8c0 , maggr-a4r257 , maggr-a4rd24 , maggr-a4ri35 , maggr-a4rlz4 , maggr-a4rme6 , maggr-q0pnd2 , maggr-q0pnd5 , maggr-q2keh4 , maggr-q2khf5 , mago7-a4qsp1 , mago7-a4qt55 , mago7-a4qua7 , mago7-a4qup0 , mago7-a4qvx8 , mago7-a4qwz1 , mago7-a4qx26 , mago7-a4qxi6 , mago7-a4qz39 , mago7-a4qzg2 , mago7-a4r4e9 , mago7-a4r4n4 , mago7-a4r6f4 , mago7-a4r106 , mago7-a4ra37 , mago7-a4rdm3 , mago7-a4rgp8 , mago7-a4rlj9 , mago7-a4rpg7 , mago7-a4uc22 , mago7-dapb , mago7-g4mk92 , mago7-g4mkc6 , mago7-g4mkk9 , mago7-g4mns9 , mago7-g4ms19 , mago7-g4mvm8 , mago7-g4mvw5 , mago7-g4mvw6 , mago7-g4n6j4 , mago7-g4nal1 , mago7-g4naw0 , mago7-g4nba0 , mago7-g4nbs0 , mago7-g4nc41 , mago7-g4ncz9 , mago7-g4nhn9 , mago7-g4nil3 , mago7-g4nky6 , mago7-g5ehg6 , mago7-g5ehv6 , mago7-q2kh83 , mago7-q2khe7 , mago7-a4qxp0 , mago7-g4nih2 , mago7-g4mr24 , mago7-g4nff5 , mago7-g4n8c3 , mago7-g4ni03 , mago7-g4nhm4 , mago7-g4nfb6 , mago7-g4mmn3 , mago7-g4mqv7 , mago7-g4mzv6 , mago7-g4nbz1 , mago7-g4ms46 , mago7-g4n0h2 , mago7-g4nev7 , mago7-g4msm5 , magoy-l7i6m7 , mago7-g4ne75 , magor-a0a4p7n714 , magor-a0a4p7nig7 , mago7-g4mzi2 , mago7-cbpya , mago7-kex1 , mago7-g4n703

Title : DNA sequence and analysis of human chromosome 18 - Nusbaum_2005_Nature_437_551
Author(s) : Nusbaum C , Zody MC , Borowsky ML , Kamal M , Kodira CD , Taylor TD , Whittaker CA , Chang JL , Cuomo CA , Dewar K , Fitzgerald MG , Yang X , Abouelleil A , Allen NR , Anderson S , Bloom T , Bugalter B , Butler J , Cook A , Decaprio D , Engels R , Garber M , Gnirke A , Hafez N , Hall JL , Norman CH , Itoh T , Jaffe DB , Kuroki Y , Lehoczky J , Lui A , Macdonald P , Mauceli E , Mikkelsen TS , Naylor JW , Nicol R , Nguyen C , Noguchi H , O'Leary SB , O'Neill K , Piqani B , Smith CL , Talamas JA , Topham K , Totoki Y , Toyoda A , Wain HM , Young SK , Zeng Q , Zimmer AR , Fujiyama A , Hattori M , Birren BW , Sakaki Y , Lander ES
Ref : Nature , 437 :551 , 2005
Abstract :
PubMedSearch : Nusbaum_2005_Nature_437_551
PubMedID: 16177791
Gene_locus related to this paper: human-LIPG

Title : Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae - Galagan_2005_Nature_438_1105
Author(s) : Galagan JE , Calvo SE , Cuomo C , Ma LJ , Wortman JR , Batzoglou S , Lee SI , Basturkmen M , Spevak CC , Clutterbuck J , Kapitonov V , Jurka J , Scazzocchio C , Farman M , Butler J , Purcell S , Harris S , Braus GH , Draht O , Busch S , d'Enfert C , Bouchier C , Goldman GH , Bell-Pedersen D , Griffiths-Jones S , Doonan JH , Yu J , Vienken K , Pain A , Freitag M , Selker EU , Archer DB , Penalva MA , Oakley BR , Momany M , Tanaka T , Kumagai T , Asai K , Machida M , Nierman WC , Denning DW , Caddick M , Hynes M , Paoletti M , Fischer R , Miller B , Dyer P , Sachs MS , Osmani SA , Birren BW
Ref : Nature , 438 :1105 , 2005
Abstract :
PubMedSearch : Galagan_2005_Nature_438_1105
PubMedID: 16372000
Gene_locus related to this paper: emeni-axe1 , emeni-BST1 , emeni-c8vrl3 , emeni-CUTI3 , emeni-faec , emeni-ppme1 , emeni-q5aqv0 , emeni-q5ara9 , emeni-q5av79 , emeni-q5avd3 , emeni-q5awc7 , emeni-q5awq3 , emeni-q5awu9 , emeni-q5aww7 , emeni-q5ax50 , emeni-q5ay37 , emeni-q5ay57 , emeni-q5ayk9 , emeni-q5az32 , emeni-q5azl2 , emeni-q5azp1 , emeni-q5b1v2 , emeni-q5b2c1 , emeni-q5b3d2 , emeni-q5b5j7 , emeni-q5b7i6 , emeni-q5b8p6 , emeni-q5b9e7 , emeni-q5b246 , emeni-q5b446 , emeni-q5b602 , emeni-q5b938 , emeni-q5ba78 , emeni-q5bad3 , emeni-q5bar0 , emeni-q5bcd1 , emeni-q5bcd2 , emeni-q5bcf8 , emeni-q5bdr0 , emeni-q5beh9 , emeni-q5bgk7 , emeni-q7si80 , emeni-q5bdv9 , emeni-c8vu15 , 9euro-a0a3d8t644 , emeni-q5b719 , emeni-q5ax97 , emeni-tdia , emeni-afoc , emeni-dbae

Title : Mapping of Myxococcus xanthus social motility dsp mutations to the dif genes - Lancero_2002_J.Bacteriol_184_1462
Author(s) : Lancero H , Brofft JE , Downard J , Birren BW , Nusbaum C , Naylor J , Shi W , Shimkets LJ
Ref : Journal of Bacteriology , 184 :1462 , 2002
Abstract :
PubMedSearch : Lancero_2002_J.Bacteriol_184_1462
PubMedID: 11844780
Gene_locus related to this paper: myxxa-Q8VQX5